CSPI05G21230 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G21230
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Mitochondrial transcription termination factor family protein, putative
Location	Chr5 : 22054525 .. 22055419 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGTGAAAACGGTTAAAGAATTAGGCGTTGAACCTAAGGATTTTAAGTTTGTTCATGCAGTTACTACAGTGCTTTCAATGAGTGATTCAAATTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTATTTAACTTGTTCGGAGGATAAATTGAGGGATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTAGATCCAGGAACTCTAATTAGTTACCCTGTGTTATTCAAGTATTCAGTCGACAAGCGGCTCCGACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAGAACGAAAAGAGTGCTCAGTTGTTTTTCCGAGGGGAGAGAGAATTTGTGGAGAATTATATTGTTAAGCATTTGGATGAAATCCCAAATCTGATGGATATATACCGAGGCAATGTCGCATCCGAAACCAAATCTGTTCTATAGGATTGGAAGGTAGTTAGTTAATTAGTGTCATAGTTCTTCTATTAGTTGCTCTAAACAAAGATTGACTTTTGTGAATGGAGACCCAGTAGAGGAGGTCTACATCAGCCCTGCGTCTCAAAGAGAAAATACACCGTTGATTTGCTAAATGACACAGGTATGTTGGGTACGGTCTGCTGACATTAATAATGTTCTTATAGTTTAAATTTGAGCATCATGTGATCTTCAAATGGGAGAGCATTTTTGTTGTTATTAAGCCTACTGTCTTAAATAACACTGCTTCTTGAGCTTTTCAAATGGGGTGGGAGGGTTGTGTTGTTTTTGCATCCAAATTAAGGCAATTAGTTAGGTAAATCTATTTGGTGTATAATTCTTCATAGACATGTTAATCTTGAAATTGGAGGCC

mRNA sequence

GCAGTGAAAACGGTTAAAGAATTAGGCGTTGAACCTAAGGATTTTAAGTTTGTTCATGCAGTTACTACAGTGCTTTCAATGAGTGATTCAAATTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTATTTAACTTGTTCGGAGGATAAATTGAGGGATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTAGATCCAGGAACTCTAATTAGTTACCCTGTGTTATTCAAGTATTCAGTCGACAAGCGGCTCCGACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAGAACGAAAAGAGTGCTCAGTTGTTTTTCCGAGGGGAGAGAGAATTTGTGGAGAATTATATTGTTAAGCATTTGGATGAAATCCCAAATCTGATGGATATATACCGAGGCAATGTCGCATCCGAAACCAAATCTGTTCTATAG

Coding sequence (CDS)

GCAGTGAAAACGGTTAAAGAATTAGGCGTTGAACCTAAGGATTTTAAGTTTGTTCATGCAGTTACTACAGTGCTTTCAATGAGTGATTCAAATTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTATTTAACTTGTTCGGAGGATAAATTGAGGGATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTAGATCCAGGAACTCTAATTAGTTACCCTGTGTTATTCAAGTATTCAGTCGACAAGCGGCTCCGACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAGAACGAAAAGAGTGCTCAGTTGTTTTTCCGAGGGGAGAGAGAATTTGTGGAGAATTATATTGTTAAGCATTTGGATGAAATCCCAAATCTGATGGATATATACCGAGGCAATGTCGCATCCGAAACCAAATCTGTTCTATAG

Homology

[Close]

BLAST of CSPI05G21230 vs. TrEMBL
Match: A0A061FRH9_THECC (Mitochondrial transcription termination factor family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_044644 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-37
Identity = 77/156 (49.36%), Postives = 109/156 (69.87%), Query Frame = 1


Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKT+KE+G+EPK+ +F+HA+  + SMS SNWKKK+ V  SLGWS+ E+   FKK P  L
Sbjct: 215 AVKTIKEIGIEPKETRFIHALRVICSMSKSNWKKKVEVFMSLGWSKEEVLNTFKKDPLCL 274

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
            CSE+KLR + DF  NT KLD   +I+YP L  YSV++R+  RY VL+ L+   L+K++K
Sbjct: 275 ACSENKLRYLMDFYVNTMKLDARAIIAYPKLLGYSVERRVHARYIVLKALESMKLIKDDK 334

Query: 121 SAQLFFR-GEREFVENYIVKHLDEIPNLMDIYRGNV 156
                 +  E++F+E YI KH+D++P L+D+Y G V
Sbjct: 335 KIVWVIKLPEKKFLEEYIAKHIDKVPGLLDMYHGAV 370

[Close]

BLAST of CSPI05G21230 vs. TrEMBL
Match: A0A061FXH7_THECC (Mitochondrial transcription termination factor family protein, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_044644 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-37
Identity = 77/156 (49.36%), Postives = 109/156 (69.87%), Query Frame = 1


Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKT+KE+G+EPK+ +F+HA+  + SMS SNWKKK+ V  SLGWS+ E+   FKK P  L
Sbjct: 133 AVKTIKEIGIEPKETRFIHALRVICSMSKSNWKKKVEVFMSLGWSKEEVLNTFKKDPLCL 192

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
            CSE+KLR + DF  NT KLD   +I+YP L  YSV++R+  RY VL+ L+   L+K++K
Sbjct: 193 ACSENKLRYLMDFYVNTMKLDARAIIAYPKLLGYSVERRVHARYIVLKALESMKLIKDDK 252

Query: 121 SAQLFFR-GEREFVENYIVKHLDEIPNLMDIYRGNV 156
                 +  E++F+E YI KH+D++P L+D+Y G V
Sbjct: 253 KIVWVIKLPEKKFLEEYIAKHIDKVPGLLDMYHGAV 288

[Close]

BLAST of CSPI05G21230 vs. TrEMBL
Match: A0A061FQC6_THECC (Mitochondrial transcription termination factor family protein, putative OS=Theobroma cacao GN=TCM_044645 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-36
Identity = 78/156 (50.00%), Postives = 108/156 (69.23%), Query Frame = 1


Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           A+KTVK++G+EPK  +F+HA+  + SMS+SNWKKK+ V  SLGWS+ E+   FKK PP L
Sbjct: 231 AIKTVKQIGLEPKVPRFIHALRVICSMSESNWKKKVEVFMSLGWSKEEVLNTFKKDPPCL 290

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKN-E 120
            CSE+KLR + DF  NT K D  T+I+Y  L  YSV+KR+  RY VL+VL+   L+K  +
Sbjct: 291 ACSENKLRCLMDFYVNTMKSDVKTIIAYSKLLHYSVEKRVHARYIVLKVLESMKLIKEYK 350

Query: 121 KSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNV 156
           K        E++F+E YI KH+D++P L+D+Y G V
Sbjct: 351 KIVWAIVLSEKKFLEAYITKHIDKVPELLDMYHGAV 386

[Close]

BLAST of CSPI05G21230 vs. TrEMBL
Match: B9GLU7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07180g PE=4 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 3.6e-36
Identity = 77/161 (47.83%), Postives = 113/161 (70.19%), Query Frame = 1


Query: 2   VKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLT 61
           V +VK LG+EPK   FVHA+  ++ MS+S WK+KI  MKSLGW+E+E+   FK+ P  L 
Sbjct: 224 VNSVKNLGLEPKAPVFVHALRVMIGMSESTWKRKIEYMKSLGWTEDEVLLTFKRNPDILA 283

Query: 62  CSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEKS 121
           CSEDK+    DF  NT +L   T+++ PVL +YS+DKR+RPRY VL+VL+ KNL+  E +
Sbjct: 284 CSEDKIGRAMDFFVNTVRLGSQTVVANPVLLQYSIDKRVRPRYNVLKVLESKNLI--EVN 343

Query: 122 AQLFF----RGEREFVENYIVKHLDEIPNLMDIYRGNVASE 159
            ++F+    R E +F ENY+ ++ D++P L++IYRG V ++
Sbjct: 344 QRVFWLLTTRSEMKFRENYVARYADKVPGLLEIYRGTVEAK 382

[Close]

BLAST of CSPI05G21230 vs. TrEMBL
Match: B9GLY5_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s06760g PE=4 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 1.4e-35
Identity = 80/155 (51.61%), Postives = 107/155 (69.03%), Query Frame = 1


Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AV  +K LGVEPK   F+HA   +LS+S SNW+KKI VMKSLGWSE EI  AFK++P  L
Sbjct: 192 AVNALKNLGVEPKTPVFLHAAKVMLSISKSNWRKKIEVMKSLGWSEEEIIVAFKRYPYLL 251

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLK-NE 120
            CSE+K+R   DF  NT KL+P  +I+ P    YSVD+RLRPR+ VL+VL  K L+K +E
Sbjct: 252 ACSEEKIRKSLDFFVNTLKLEPQAIITCPEYLSYSVDRRLRPRHNVLKVLVSKKLVKEDE 311

Query: 121 KSAQLFFR-GEREFVENYIVKHLDEIPNLMDIYRG 154
           K  +   R  +R+F+E Y+ K+ D++  L++IY G
Sbjct: 312 KIVRAVTRISDRDFLEKYVTKYADKVTGLLEIYGG 346

[Close]

BLAST of CSPI05G21230 vs. TAIR10
Match: AT5G07900.1 (AT5G07900.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-18
Identity = 49/153 (32.03%), Postives = 83/153 (54.25%), Query Frame = 1


Query: 3   KTVKELGVEPKDFKFVHAVTTVLSMSDSN-WKKKINVMKSLGWSENEIFTAFKKFPPYLT 62
           K  +E+G  P+   FV A+  +    + + W K   V +  GWSE++I  AFKK P  + 
Sbjct: 249 KQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMM 308

Query: 63  CSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEKS 122
            SE K+    ++  N   + P ++   PV+  +S++KR+ PR  V +VL    L+K + S
Sbjct: 309 LSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWS 368

Query: 123 -AQLFFRGEREFVENYIVKHLDEIPNLMDIYRG 154
              L    E+ F+E  ++K+ +E+P LM++Y G
Sbjct: 369 LTSLLVPVEKVFLEKLVIKYEEELPELMNLYLG 401

[Close]

BLAST of CSPI05G21230 vs. TAIR10
Match: AT1G21150.1 (AT1G21150.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 85.5 bits (210), Expect = 3.3e-17
Identity = 42/148 (28.38%), Postives = 80/148 (54.05%), Query Frame = 1


Query: 9   GVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLR 68
           G +PK   FVHA+      S+S  ++K  + +  GWS+ +   A  +FP  +T S++K+ 
Sbjct: 242 GFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIM 301

Query: 69  DVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNE--KSAQLFF 128
              ++  N   L    +++ PV+   S++KR++PR +V+ +L  K L+K E      +  
Sbjct: 302 YTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINYFTILK 361

Query: 129 RGEREFVENYIVKHLDEIPNLMDIYRGN 155
               EF++ +++K+ DE+P L+  +  N
Sbjct: 362 LKSSEFMDKFVLKYQDEMPQLVQPFTSN 389

[Close]

BLAST of CSPI05G21230 vs. TAIR10
Match: AT5G64950.1 (AT5G64950.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 80.9 bits (198), Expect = 8.2e-16
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 1


Query: 2   VKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLT 61
           V    +LG        VHAV ++ S+S+  + +K+ +  + G+SE+EI    ++ P  + 
Sbjct: 220 VSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIR 279

Query: 62  CSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEKS 121
           CSEDKL    +F      L+   L   P +  Y+++KR+ PR KVL++L+ K LL  E+ 
Sbjct: 280 CSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEK 339

Query: 122 AQLFFRG-----EREFVENYIVKHLDEI 145
            +    G     E  F+E Y+V+  DEI
Sbjct: 340 KKKNMVGIVEMTEEAFLEKYVVRFGDEI 367

[Close]

BLAST of CSPI05G21230 vs. TAIR10
Match: AT1G61990.1 (AT1G61990.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-12
Identity = 50/196 (25.51%), Postives = 89/196 (45.41%), Query Frame = 1


Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSN---------------------WKKKINVM 60
           ++K V E+G +P   KFV A+  +  MS+                       +KK  +V+
Sbjct: 219 SLKKVVEMGFDPTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVL 278

Query: 61  K--------------SLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTL 120
           K               LG+S  E     K++PP +  S + ++   +F     K     L
Sbjct: 279 KVSKKKILKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNAL 338

Query: 121 ISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEKS----AQLFFRGEREFVENYIVKHL 157
           + +P +F YS++KR+ PR  +LE L  K LL+        + +    +  F++ Y++KH 
Sbjct: 339 VLHPQVFGYSMEKRIIPRCNILEALLSKGLLRKGSELPAVSSVLSCTDEGFLDRYVMKHN 398

[Close]

BLAST of CSPI05G21230 vs. TAIR10
Match: AT1G61970.1 (AT1G61970.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-11
Identity = 48/192 (25.00%), Postives = 84/192 (43.75%), Query Frame = 1


Query: 2   VKTVKELGVEPKDFKFVHAVTTVLSMSD---------------------SNWKK------ 61
           +K V E+G +P   KFV A+  +  M++                     S++KK      
Sbjct: 227 LKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKKWPISLR 286

Query: 62  --------KINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRDVADFCFNTAKLDPGTLI 121
                    I     LG+S +E     K FPP +  S + ++   +F           ++
Sbjct: 287 VSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNWPLKAVV 346

Query: 122 SYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNE--KSAQLFFRGEREFVENYIVKHLDE- 155
           S P +F YS++KR+ PR  V++ L  K L++NE    + +    ++ F+  Y+  H+D+ 
Sbjct: 347 SNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNRYVANHVDKQ 406

[Close]

BLAST of CSPI05G21230 vs. NCBI nr
Match: gi|778704431|ref|XP_011655536.1| (PREDICTED: uncharacterized protein LOC105435554 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 1.0e-68
Identity = 132/163 (80.98%), Postives = 145/163 (88.96%), Query Frame = 1


Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKTVKELGVEPKD  FV+AV+TV SMS SNWKKKIN+MKSLGWSE +I TAFK+FP YL
Sbjct: 329 AVKTVKELGVEPKDGMFVYAVSTVASMSGSNWKKKINIMKSLGWSEKDIATAFKRFPLYL 388

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
           TCSE+K++DVADFCFNTAK D  TLISYPVLFK SVDKRL+PRYKVLEVLKVKNLLKN K
Sbjct: 389 TCSEEKMKDVADFCFNTAKFDTRTLISYPVLFKCSVDKRLQPRYKVLEVLKVKNLLKNRK 448

Query: 121 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 164
            A +F +GE+ FVE Y+VKHL EIPNLMDIYRGNVASETKSVL
Sbjct: 449 IASIFLKGEKTFVEKYVVKHLAEIPNLMDIYRGNVASETKSVL 491

[Close]

BLAST of CSPI05G21230 vs. NCBI nr
Match: gi|778704400|ref|XP_004135534.2| (PREDICTED: uncharacterized protein LOC101204518 [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 6.7e-68
Identity = 127/163 (77.91%), Postives = 143/163 (87.73%), Query Frame = 1


Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKT KELG+EPK   F++AV   LSMSDSNWKKKINVMKSLGWSE+EIFTA+KK+PPYL
Sbjct: 211 AVKTAKELGIEPKSGMFIYAVVVRLSMSDSNWKKKINVMKSLGWSEDEIFTAYKKYPPYL 270

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
            CSE+KLRDVADFC NTAKLDPGTLI+YP  F +SV+KRL+PRY+VLEVLK+KNLLKN+K
Sbjct: 271 NCSEEKLRDVADFCSNTAKLDPGTLITYPNFFTFSVEKRLQPRYRVLEVLKLKNLLKNKK 330

Query: 121 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 164
            A  F  GER FVE Y+VKHLDEIPNLMDIYRGNV +ETKSVL
Sbjct: 331 IAPFFVEGERRFVEKYVVKHLDEIPNLMDIYRGNVPAETKSVL 373

[Close]

BLAST of CSPI05G21230 vs. NCBI nr
Match: gi|659090285|ref|XP_008445933.1| (PREDICTED: uncharacterized protein LOC103488812 [Cucumis melo])

HSP 1 Score: 261.9 bits (668), Expect = 7.4e-67
Identity = 130/163 (79.75%), Postives = 140/163 (85.89%), Query Frame = 1


Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKTVKELG+EPK   FV+AV   LSMSDS WKKKINVMKSLGWS+ EIFTAFK+ P YL
Sbjct: 211 AVKTVKELGIEPKARTFVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFTAFKRHPNYL 270

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
            CSE+K+RDVADFCFNTAKLDPGTLISYP LFK S DKRLRPRYKVLEVLKVKNLLKN+K
Sbjct: 271 GCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLKVKNLLKNKK 330

Query: 121 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 164
            A +   GER FVE Y+VKHLDEIPNLMDIY GNV +ETKSVL
Sbjct: 331 IASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEAETKSVL 373

[Close]

BLAST of CSPI05G21230 vs. NCBI nr
Match: gi|659092292|ref|XP_008446996.1| (PREDICTED: uncharacterized protein LOC103489540 [Cucumis melo])

HSP 1 Score: 261.9 bits (668), Expect = 7.4e-67
Identity = 133/164 (81.10%), Postives = 145/164 (88.41%), Query Frame = 1


Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKTVKELGVEPKD  FV+AV+ V SM+ S+WKKKINVMKSLGWSE EIFTAFK++P  L
Sbjct: 65  AVKTVKELGVEPKDRAFVYAVSAVGSMNHSSWKKKINVMKSLGWSEKEIFTAFKRYPLCL 124

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
           TCSE+K+RDVADFCFNTAKLDPGTLISYPV F  SVDKRLRPRYKVLEVLKVKNLLKN+K
Sbjct: 125 TCSEEKMRDVADFCFNTAKLDPGTLISYPVFFNLSVDKRLRPRYKVLEVLKVKNLLKNKK 184

Query: 121 SAQL--FFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSV 163
            A    F +GEREFV+N +VKHLDEIPNLMDIYRGN ASETKSV
Sbjct: 185 IALTGWFMQGEREFVKNNVVKHLDEIPNLMDIYRGNGASETKSV 228

[Close]

BLAST of CSPI05G21230 vs. NCBI nr
Match: gi|659090379|ref|XP_008445985.1| (PREDICTED: uncharacterized protein LOC103488851 [Cucumis melo])

HSP 1 Score: 261.2 bits (666), Expect = 1.3e-66
Identity = 130/162 (80.25%), Postives = 143/162 (88.27%), Query Frame = 1


Query: 1   AVKTVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYL 60
           AVKTVKELGVEPKD  FV+AV+ V SMSDS+WKKKINVMKSLGWSE EIFTAFKK P +L
Sbjct: 65  AVKTVKELGVEPKDRTFVYAVSAVGSMSDSSWKKKINVMKSLGWSEKEIFTAFKKDPTFL 124

Query: 61  TCSEDKLRDVADFCFNTAKLDPGTLISYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEK 120
           TCSE+K+RDVADFCFNTAKLDP ++I YP  F+ SVDKRL+PRYKV EVLKVKNLLKN+ 
Sbjct: 125 TCSEEKMRDVADFCFNTAKLDPESVIIYPKFFQCSVDKRLKPRYKVFEVLKVKNLLKNKN 184

Query: 121 SAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSV 163
            A+ F RGEREFVEN +VKHLDEIPNLMDIYRGN ASETKSV
Sbjct: 185 IARWFIRGEREFVENNVVKHLDEIPNLMDIYRGNDASETKSV 226

The following BLAST results are available for this feature:

BLAST of CSPI05G21230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G21230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061FRH9_THECC	1.9e-37	49.36	Mitochondrial transcription termination factor family protein, putative isoform ...	[more]
A0A061FXH7_THECC	1.9e-37	49.36	Mitochondrial transcription termination factor family protein, putative isoform ...	[more]
A0A061FQC6_THECC	1.2e-36	50.00	Mitochondrial transcription termination factor family protein, putative OS=Theob...	[more]
B9GLU7_POPTR	3.6e-36	47.83	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07180g PE=4 SV=2	[more]
B9GLY5_POPTR	1.4e-35	51.61	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s06760g P...	[more]

BLAST of CSPI05G21230 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07900.1	2.3e-18	32.03	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	3.3e-17	28.38	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	8.2e-16	32.43	Mitochondrial transcription termination factor family protein	[more]
AT1G61990.1	4.2e-12	25.51	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	3.6e-11	25.00	Mitochondrial transcription termination factor family protein	[more]

BLAST of CSPI05G21230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778704431\|ref\|XP_011655536.1\|	1.0e-68	80.98	PREDICTED: uncharacterized protein LOC105435554 [Cucumis sativus]	[more]
gi\|778704400\|ref\|XP_004135534.2\|	6.7e-68	77.91	PREDICTED: uncharacterized protein LOC101204518 [Cucumis sativus]	[more]
gi\|659090285\|ref\|XP_008445933.1\|	7.4e-67	79.75	PREDICTED: uncharacterized protein LOC103488812 [Cucumis melo]	[more]
gi\|659092292\|ref\|XP_008446996.1\|	7.4e-67	81.10	PREDICTED: uncharacterized protein LOC103489540 [Cucumis melo]	[more]
gi\|659090379\|ref\|XP_008445985.1\|	1.3e-66	80.25	PREDICTED: uncharacterized protein LOC103488851 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003690	MTERF

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G21230.1	CSPI05G21230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 3..112 score: 1.1
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 15..45 score: 0.83coord: 82..113 score: 0.11coord: 50..81 score: 3
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..163 score: 4.4
None	No IPR available	PANTHER	PTHR13068:SF20	SUBFAMILY NOT NAMED	coord: 1..163 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G21230	MELO3C011828	Melon (DHL92) v3.5.1	cpimeB362
CSPI05G21230	MELO3C011846.2	Melon (DHL92) v3.6.1	cpimedB363
CSPI05G21230	MELO3C011833.2	Melon (DHL92) v3.6.1	cpimedB354
CSPI05G21230	MELO3C034191.2	Melon (DHL92) v3.6.1	cpimedB360
CSPI05G21230	CsaV3_5G029860	Cucumber (Chinese Long) v3	cpicucB301
CSPI05G21230	CsaV3_5G030050	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G21230	Cucsa.076060	Cucumber (Gy14) v1	cgycpiB074
CSPI05G21230	CsGy5G020610	Cucumber (Gy14) v2	cgybcpiB237
CSPI05G21230	CsGy5G020290	Cucumber (Gy14) v2	cgybcpiB233

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G21230	Cucumber (Gy14) v1	cgycpiB076
CSPI05G21230	Cucurbita maxima (Rimu)	cmacpiB419
CSPI05G21230	Cucurbita maxima (Rimu)	cmacpiB745
CSPI05G21230	Cucurbita maxima (Rimu)	cmacpiB758
CSPI05G21230	Cucurbita moschata (Rifu)	cmocpiB412
CSPI05G21230	Cucurbita moschata (Rifu)	cmocpiB739
CSPI05G21230	Cucurbita moschata (Rifu)	cmocpiB748
CSPI05G21230	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G21230	Cucumber (Chinese Long) v2	cpicuB252
CSPI05G21230	Melon (DHL92) v3.5.1	cpimeB369
CSPI05G21230	Watermelon (Charleston Gray)	cpiwcgB369
CSPI05G21230	Watermelon (Charleston Gray)	cpiwcgB375
CSPI05G21230	Watermelon (97103) v1	cpiwmB444
CSPI05G21230	Watermelon (97103) v1	cpiwmB452
CSPI05G21230	Cucurbita pepo (Zucchini)	cpecpiB042
CSPI05G21230	Cucurbita pepo (Zucchini)	cpecpiB426
CSPI05G21230	Cucurbita pepo (Zucchini)	cpecpiB440
CSPI05G21230	Bottle gourd (USVL1VR-Ls)	cpilsiB368
CSPI05G21230	Bottle gourd (USVL1VR-Ls)	cpilsiB372
CSPI05G21230	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G21230	Silver-seed gourd	carcpiB0152
CSPI05G21230	Silver-seed gourd	carcpiB0153
CSPI05G21230	Silver-seed gourd	carcpiB0727
CSPI05G21230	Watermelon (97103) v2	cpiwmbB373
CSPI05G21230	Watermelon (97103) v2	cpiwmbB379