CSPI05G19400 (gene) Wild cucumber (PI 183967)

NameCSPI05G19400
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrotransposon protein
LocationChr5 : 20639267 .. 20640211 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAACCAAAACATTCGCACTATACTAGTTGTCTTCACATCCACCCATAATCAGTTAGTACTGCTATTGGATTCACTAATGAATGACAATAAGCGGGTGACCCATAAACCGTACGAATTGAGGCATCAAATTAGACAATTGTCATACTTCCGTATGATACACTCCTCCGACCTCGTTTATTGTGAAAGTACCAGAATGGACAGACGAACTTTTTCCATTCTATGTCACTTATTGAGGACGATTGCTGGTCTGACGTCGACCGAAATCGTCGATGGTCGCCATGTTTCTGCATATATTGGCACACGATGTCAAGAATAGAGTCATCCAGCGGGATTTTGTGCGATCAGGAGAGACTGTTTCCCGTCACTTTAACCTCGTACTGTTGGCGGTGTTGCGATTGCACAATGAGTTGTTGAAGAAACCCCAGCCAGTGACTAACACATGCACTGATTCACGATGGAGTTGCTTTGAGGTCCGCATATTACTATATTCTGTTACTTATCAATCACCACGTCAGTGACTAACTGGGTGGTATTTCATTCTGCAGAACTGCCTTGGGGCATTGGATGACACGTATATCAAGGTGAACATGTCGCAAACCGATAGGCATAGGTATAAAACACGTAAGGGAGAAGTTGCCACAAACGTCCTCGGTGTGTGTGATACGAAAGGCGACTTCGTCTTCGTATTGGCTGGTTGGGAAGGATCCGCAGCAGATTCGCGTATTCTTCGAGATGCTATTGCACGACCAAATGGACTGCATGTTCCTCACGGTAATCAAATGTTTTATGCCTCGAACATATACTTCCTACAACGTCAAGCAAATTAGTTCGATCTGACGCATTCGTAATAGGTTATTACTATCTATGCGACGTCGGATATCCCAATGCAGAGGGATTTCTAGCTCCCTATAGAGGACAAAGAGACCACTTGCAAGAGTAG

mRNA sequence

ATGGATAACCAAAACATTCGCACTATACTAGTTGTCTTCACATCCACCCATAATCAGTTAGTACTGCTATTGGATTCACTAATGAATGACAATAAGCGGGTGACCCATAAACCGTACGAATTGAGGCATCAAATTAGACAATTGTCATACTTCCGTATGATACACTCCTCCGACCTCGTTTATTGTGAAAGTACCAGAATGGACAGACGAACTTTTTCCATTCTATGTCACTTATTGAGGACGATTGCTGGTCTGACGTCGACCGAAATCGTCGATGGAGAGACTGTTTCCCGTCACTTTAACCTCGTACTGTTGGCGGTGTTGCGATTGCACAATGAGTTGTTGAAGAAACCCCAGCCAGTGACTAACACATGCACTGATTCACGATGGAGTTGCTTTGAGAACTGCCTTGGGGCATTGGATGACACGTATATCAAGGTGAACATGTCGCAAACCGATAGGCATAGGTATAAAACACGTAAGGGAGAAGTTGCCACAAACGTCCTCGGTGTGTGTTATTACTATCTATGCGACGTCGGATATCCCAATGCAGAGGGATTTCTAGCTCCCTATAGAGGACAAAGAGACCACTTGCAAGAGTAG

Coding sequence (CDS)

ATGGATAACCAAAACATTCGCACTATACTAGTTGTCTTCACATCCACCCATAATCAGTTAGTACTGCTATTGGATTCACTAATGAATGACAATAAGCGGGTGACCCATAAACCGTACGAATTGAGGCATCAAATTAGACAATTGTCATACTTCCGTATGATACACTCCTCCGACCTCGTTTATTGTGAAAGTACCAGAATGGACAGACGAACTTTTTCCATTCTATGTCACTTATTGAGGACGATTGCTGGTCTGACGTCGACCGAAATCGTCGATGGAGAGACTGTTTCCCGTCACTTTAACCTCGTACTGTTGGCGGTGTTGCGATTGCACAATGAGTTGTTGAAGAAACCCCAGCCAGTGACTAACACATGCACTGATTCACGATGGAGTTGCTTTGAGAACTGCCTTGGGGCATTGGATGACACGTATATCAAGGTGAACATGTCGCAAACCGATAGGCATAGGTATAAAACACGTAAGGGAGAAGTTGCCACAAACGTCCTCGGTGTGTGTTATTACTATCTATGCGACGTCGGATATCCCAATGCAGAGGGATTTCTAGCTCCCTATAGAGGACAAAGAGACCACTTGCAAGAGTAG
BLAST of CSPI05G19400 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.3e-58
Identity = 131/266 (49.25%), Postives = 149/266 (56.02%), Query Frame = 1

Query: 1   MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLV 60
           MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH     
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHG---- 60

Query: 61  YCESTRMDRRTFSILCHLLRTIAGLTSTEIVD---------------------------- 120
                               TIAGLTSTE+VD                            
Sbjct: 61  --------------------TIAGLTSTEVVDVEEMVAMFLHILAHDVKSRVIKREFMRS 120

Query: 121 GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQT 180
           GET+SRHFN+VLLAV+RLH ELLKKPQPV N CTD RW  FENCLGALD TYIKVN+  +
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 DRHRYKTRKGEVATNVLGVC--------------------------------------YY 201
           DR RY+TRKGEVATNVLGVC                                      YY
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

BLAST of CSPI05G19400 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.6e-54
Identity = 116/214 (54.21%), Postives = 130/214 (60.75%), Query Frame = 1

Query: 53  MIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD-------------------- 112
           MIH SDLV  +STRMDRRTF+ILCHLLR +AGL+STEIVD                    
Sbjct: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 113 --------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTY 172
                   GETVSRHFN+VLLAVLRL+ EL+K+P PVT+ C D RW CFENCLGALD TY
Sbjct: 61  IQQEFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 120

Query: 173 IKVNMSQTDRHRYKTRKGEVATNVLGVC-------------------------------- 201
           IKVN+   DR  ++TRKGE+ATNVLGVC                                
Sbjct: 121 IKVNVPAGDRPTFRTRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENG 180

BLAST of CSPI05G19400 vs. TrEMBL
Match: A0A068UN28_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019523001 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 90/162 (55.56%), Postives = 101/162 (62.35%), Query Frame = 1

Query: 67  MDRRTFSILCHLLRTIAGLTST------EIV----------------------DGETVSR 126
           MDRRTF ILC ++R   GL +T      EIV                        ETVSR
Sbjct: 1   MDRRTFGILCEMIRDTGGLKATRNMSIEEIVAMFVYVLAHHKKSRTICGLFWRSRETVSR 60

Query: 127 HFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYK 186
            FNL LLAVL+LH  LLKKP+P+T  CTD RW CF+NCLGALD T I V      + RY+
Sbjct: 61  QFNLCLLAVLKLHTILLKKPEPITEDCTDERWKCFKNCLGALDGTLIDVTPPTEQKSRYR 120

Query: 187 TRKGEVATNVLGVCYYYLCDVGYPNAEGFLAPYRGQRDHLQE 201
           TRKG +ATNVLGVC YYL D GY NA+GFLAPYRGQR HL E
Sbjct: 121 TRKGSIATNVLGVCCYYLVDAGYCNADGFLAPYRGQRYHLNE 162

BLAST of CSPI05G19400 vs. TrEMBL
Match: A0A068VE76_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00001334001 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-40
Identity = 89/162 (54.94%), Postives = 101/162 (62.35%), Query Frame = 1

Query: 67  MDRRTFSILCHLLRTIAGLTST------EIV----------------------DGETVSR 126
           MDRRTF ILC ++R   GL +T      EIV                        ETVSR
Sbjct: 1   MDRRTFGILCEMIRDTGGLKATRNMSIEEIVAMFVYVLAHHKKSRTICGLFWRSRETVSR 60

Query: 127 HFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYK 186
            FNL LLA+L+LH  LLKKP+P+T  CTD RW CF+NCLGALD T I V      + RY+
Sbjct: 61  QFNLCLLAILKLHTILLKKPEPITEDCTDERWKCFKNCLGALDGTLIDVTPPTEQKSRYR 120

Query: 187 TRKGEVATNVLGVCYYYLCDVGYPNAEGFLAPYRGQRDHLQE 201
           TRKG +ATNVLGVC YYL D GY NA+GFLAPYRGQR HL E
Sbjct: 121 TRKGSIATNVLGVCCYYLVDAGYCNADGFLAPYRGQRYHLNE 162

BLAST of CSPI05G19400 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-39
Identity = 104/262 (39.69%), Postives = 129/262 (49.24%), Query Frame = 1

Query: 5   NIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCES 64
           N+ T L   T  H Q   L++   N            R  +R  +  R+I+ SD+   E 
Sbjct: 24  NMLTALCTTTRKHYQRRTLMERPAN------------REFLRVENLNRLIYGSDVACMEQ 83

Query: 65  TRMDRRTFSILCHLLRTIAGLTSTEIVD----------------------------GETV 124
            RMDR TF+ LC +LRTI  L  ++ +D                            GET+
Sbjct: 84  LRMDRHTFTTLCSMLRTIGKLKDSKYIDVEEMVALFLHILAHHVKNRVIKFRFLRSGETI 143

Query: 125 SRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHR 184
           SRHFN VL AV+RL   LLKKP+PV+   TD RW  F+NCLGALD TYIKVN+ + D+ R
Sbjct: 144 SRHFNAVLNAVIRLQGVLLKKPEPVSENSTDERWKWFKNCLGALDGTYIKVNVREGDKPR 203

Query: 185 YKTRKGEVATNVLGVC--------------------------------------YYYLCD 201
           Y+TRK E+ATNVLGVC                                      YYYL D
Sbjct: 204 YRTRKNEIATNVLGVCSQDMQFIYVLPGWEGSTSDSRVLRDAVSRRNGLTVPHGYYYLVD 263

BLAST of CSPI05G19400 vs. NCBI nr
Match: gi|659109391|ref|XP_008454692.1| (PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 6.7e-70
Identity = 147/266 (55.26%), Postives = 166/266 (62.41%), Query Frame = 1

Query: 1   MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLV 60
           M    +  I+ VF ++  QL+L L+ L ND KR+TH PYE+RH+IRQL+YFRMIH SDLV
Sbjct: 1   MGEHELAYIVNVFIASQRQLLLTLELLKNDTKRITHIPYEIRHRIRQLAYFRMIHGSDLV 60

Query: 61  YCESTRMDRRTFSILCHLLRTIAGLTSTEIVD---------------------------- 120
             +STRMD+R F+ILCHLLRTIA LTSTE+VD                            
Sbjct: 61  CRQSTRMDQRCFAILCHLLRTIAELTSTEVVDVEEMVAMYLHILAHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQT 180
           GE +SRHFN+VLLAV+RLH ELLKKPQPV N CTD RW  FENCLGALD TYIKVN+  +
Sbjct: 121 GEIISRHFNMVLLAVIRLHGELLKKPQPVPNDCTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 DRHRYKTRKGEVATNVLGVC--------------------------------------YY 201
           DR RYKTRKGEVATNVLGVC                                      YY
Sbjct: 181 DRARYKTRKGEVATNVLGVCDTKGDFVYVLTDWEESDADSLILHDALSRPNGLKVPKGYY 240

BLAST of CSPI05G19400 vs. NCBI nr
Match: gi|659113203|ref|XP_008456452.1| (PREDICTED: uncharacterized protein LOC103496395 [Cucumis melo])

HSP 1 Score: 258.1 bits (658), Expect = 1.3e-65
Identity = 133/206 (64.56%), Postives = 149/206 (72.33%), Query Frame = 1

Query: 23  LLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLVYCESTRMDRRTFSILCHLLRTI 82
           +L+ L ND KRVTH PYE RH+IRQL+YFRMIH SDLV  +STRM+RR F+ILCHLLRTI
Sbjct: 1   MLELLKNDTKRVTHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMNRRCFAILCHLLRTI 60

Query: 83  AGLTSTEIVD----------------------------GETVSRHFNLVLLAVLRLHNEL 142
           AGLTST++VD                             ET+SRHFN+VLLAV+RLH EL
Sbjct: 61  AGLTSTKVVDVEEMVAMFLHILAHDVKNRVIQREFMRSSETISRHFNMVLLAVIRLHKEL 120

Query: 143 LKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQTDRHRYKTRKGEVATNVLGVCYY 201
           LKKPQPV N CT+ RW  FENCLGALD  YIKVN+  +DR RY+TRKGEVATNV    YY
Sbjct: 121 LKKPQPVPNDCTNQRWRWFENCLGALDGMYIKVNVPASDRARYRTRKGEVATNV-PKGYY 180

BLAST of CSPI05G19400 vs. NCBI nr
Match: gi|659131061|ref|XP_008465488.1| (PREDICTED: uncharacterized protein LOC103503107 [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 2.8e-60
Identity = 127/228 (55.70%), Postives = 146/228 (64.04%), Query Frame = 1

Query: 1   MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLV 60
           MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH S+LV
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSNLV 60

Query: 61  YCESTRMDRRTFSILCHLLRTIAGLTSTEIVD---------------------------- 120
              STRMDRR F ILCHLLRTIAGLTSTE++D                            
Sbjct: 61  CRRSTRMDRRCFVILCHLLRTIAGLTSTEVIDVEEMVAMFLHILAHNVKNRVIQREFMWS 120

Query: 121 GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQT 180
            ET+ RHFN+VLLAV+RLH ELLKKPQPV N CT  RW  FENCLGALD TYIKVN+  +
Sbjct: 121 SETIFRHFNMVLLAVIRLHEELLKKPQPVPNECTYQRWRWFENCLGALDRTYIKVNIPAS 180

Query: 181 DRHRYKTRKGEVATNVLGVCYYYLCDVGYPNAEGFLAPYRGQRDHLQE 201
           DR                  YYYL DVGYPN EGFLAPYR QR HLQE
Sbjct: 181 DR----------------ASYYYLVDVGYPNTEGFLAPYRSQRYHLQE 212

BLAST of CSPI05G19400 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 232.3 bits (591), Expect = 7.7e-58
Identity = 131/266 (49.25%), Postives = 149/266 (56.02%), Query Frame = 1

Query: 1   MDNQNIRTILVVFTSTHNQLVLLLDSLMNDNKRVTHKPYELRHQIRQLSYFRMIHSSDLV 60
           MD   + +I+  F ++  QL+L+L+ L ND KR+TH PYE RH+IRQL+YFRMIH     
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHG---- 60

Query: 61  YCESTRMDRRTFSILCHLLRTIAGLTSTEIVD---------------------------- 120
                               TIAGLTSTE+VD                            
Sbjct: 61  --------------------TIAGLTSTEVVDVEEMVAMFLHILAHDVKSRVIKREFMRS 120

Query: 121 GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTYIKVNMSQT 180
           GET+SRHFN+VLLAV+RLH ELLKKPQPV N CTD RW  FENCLGALD TYIKVN+  +
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 181 DRHRYKTRKGEVATNVLGVC--------------------------------------YY 201
           DR RY+TRKGEVATNVLGVC                                      YY
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

BLAST of CSPI05G19400 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 219.5 bits (558), Expect = 5.1e-54
Identity = 116/214 (54.21%), Postives = 130/214 (60.75%), Query Frame = 1

Query: 53  MIHSSDLVYCESTRMDRRTFSILCHLLRTIAGLTSTEIVD-------------------- 112
           MIH SDLV  +STRMDRRTF+ILCHLLR +AGL+STEIVD                    
Sbjct: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 113 --------GETVSRHFNLVLLAVLRLHNELLKKPQPVTNTCTDSRWSCFENCLGALDDTY 172
                   GETVSRHFN+VLLAVLRL+ EL+K+P PVT+ C D RW CFENCLGALD TY
Sbjct: 61  IQQEFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTY 120

Query: 173 IKVNMSQTDRHRYKTRKGEVATNVLGVC-------------------------------- 201
           IKVN+   DR  ++TRKGE+ATNVLGVC                                
Sbjct: 121 IKVNVPAGDRPTFRTRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENG 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
E5GCB5_CUCME5.3e-5849.25Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB2_CUCME3.6e-5454.21Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A068UN28_COFCA1.3e-4055.56Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019523001 PE=4 SV=1[more]
A0A068VE76_COFCA1.7e-4054.94Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00001334001 PE=4 SV=1[more]
A5BND9_VITVI1.5e-3939.69Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659109391|ref|XP_008454692.1|6.7e-7055.26PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo][more]
gi|659113203|ref|XP_008456452.1|1.3e-6564.56PREDICTED: uncharacterized protein LOC103496395 [Cucumis melo][more]
gi|659131061|ref|XP_008465488.1|2.8e-6055.70PREDICTED: uncharacterized protein LOC103503107 [Cucumis melo][more]
gi|307136287|gb|ADN34114.1|7.7e-5849.25retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307135889|gb|ADN33754.1|5.1e-5454.21retrotransposon protein [Cucumis melo subsp. melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G19400.1CSPI05G19400.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 2..200
score: 5.5
NoneNo IPR availablePANTHERPTHR22930:SF27SUBFAMILY NOT NAMEDcoord: 2..200
score: 5.5

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G19400Cucsa.280200Cucumber (Gy14) v1cgycpiB421
The following gene(s) are paralogous to this gene:

None