CSPI05G19400 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATAACCAAAACATTCGCACTATACTAGTTGTCTTCACATCCACCCATAATCAGTTAGTACTGCTATTGGATTCACTAATGAATGACAATAAGCGGGTGACCCATAAACCGTACGAATTGAGGCATCAAATTAGACAATTGTCATACTTCCGTATGATACACTCCTCCGACCTCGTTTATTGTGAAAGTACCAGAATGGACAGACGAACTTTTTCCATTCTATGTCACTTATTGAGGACGATTGCTGGTCTGACGTCGACCGAAATCGTCGATGGTCGCCATGTTTCTGCATATATTGGCACACGATGTCAAGAATAGAGTCATCCAGCGGGATTTTGTGCGATCAGGAGAGACTGTTTCCCGTCACTTTAACCTCGTACTGTTGGCGGTGTTGCGATTGCACAATGAGTTGTTGAAGAAACCCCAGCCAGTGACTAACACATGCACTGATTCACGATGGAGTTGCTTTGAGGTCCGCATATTACTATATTCTGTTACTTATCAATCACCACGTCAGTGACTAACTGGGTGGTATTTCATTCTGCAGAACTGCCTTGGGGCATTGGATGACACGTATATCAAGGTGAACATGTCGCAAACCGATAGGCATAGGTATAAAACACGTAAGGGAGAAGTTGCCACAAACGTCCTCGGTGTGTGTGATACGAAAGGCGACTTCGTCTTCGTATTGGCTGGTTGGGAAGGATCCGCAGCAGATTCGCGTATTCTTCGAGATGCTATTGCACGACCAAATGGACTGCATGTTCCTCACGGTAATCAAATGTTTTATGCCTCGAACATATACTTCCTACAACGTCAAGCAAATTAGTTCGATCTGACGCATTCGTAATAGGTTATTACTATCTATGCGACGTCGGATATCCCAATGCAGAGGGATTTCTAGCTCCCTATAGAGGACAAAGAGACCACTTGCAAGAGTAG ATGGATAACCAAAACATTCGCACTATACTAGTTGTCTTCACATCCACCCATAATCAGTTAGTACTGCTATTGGATTCACTAATGAATGACAATAAGCGGGTGACCCATAAACCGTACGAATTGAGGCATCAAATTAGACAATTGTCATACTTCCGTATGATACACTCCTCCGACCTCGTTTATTGTGAAAGTACCAGAATGGACAGACGAACTTTTTCCATTCTATGTCACTTATTGAGGACGATTGCTGGTCTGACGTCGACCGAAATCGTCGATGGAGAGACTGTTTCCCGTCACTTTAACCTCGTACTGTTGGCGGTGTTGCGATTGCACAATGAGTTGTTGAAGAAACCCCAGCCAGTGACTAACACATGCACTGATTCACGATGGAGTTGCTTTGAGAACTGCCTTGGGGCATTGGATGACACGTATATCAAGGTGAACATGTCGCAAACCGATAGGCATAGGTATAAAACACGTAAGGGAGAAGTTGCCACAAACGTCCTCGGTGTGTGTTATTACTATCTATGCGACGTCGGATATCCCAATGCAGAGGGATTTCTAGCTCCCTATAGAGGACAAAGAGACCACTTGCAAGAGTAG ATGGATAACCAAAACATTCGCACTATACTAGTTGTCTTCACATCCACCCATAATCAGTTAGTACTGCTATTGGATTCACTAATGAATGACAATAAGCGGGTGACCCATAAACCGTACGAATTGAGGCATCAAATTAGACAATTGTCATACTTCCGTATGATACACTCCTCCGACCTCGTTTATTGTGAAAGTACCAGAATGGACAGACGAACTTTTTCCATTCTATGTCACTTATTGAGGACGATTGCTGGTCTGACGTCGACCGAAATCGTCGATGGAGAGACTGTTTCCCGTCACTTTAACCTCGTACTGTTGGCGGTGTTGCGATTGCACAATGAGTTGTTGAAGAAACCCCAGCCAGTGACTAACACATGCACTGATTCACGATGGAGTTGCTTTGAGAACTGCCTTGGGGCATTGGATGACACGTATATCAAGGTGAACATGTCGCAAACCGATAGGCATAGGTATAAAACACGTAAGGGAGAAGTTGCCACAAACGTCCTCGGTGTGTGTTATTACTATCTATGCGACGTCGGATATCCCAATGCAGAGGGATTTCTAGCTCCCTATAGAGGACAAAGAGACCACTTGCAAGAGTAG
BLAST of CSPI05G19400 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 232.3 bits (591), Expect = 5.3e-58 Identity = 131/266 (49.25%), Postives = 149/266 (56.02%), Query Frame = 1
BLAST of CSPI05G19400 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 3.6e-54 Identity = 116/214 (54.21%), Postives = 130/214 (60.75%), Query Frame = 1
BLAST of CSPI05G19400 vs. TrEMBL
Match: A0A068UN28_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019523001 PE=4 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40 Identity = 90/162 (55.56%), Postives = 101/162 (62.35%), Query Frame = 1
BLAST of CSPI05G19400 vs. TrEMBL
Match: A0A068VE76_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00001334001 PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 1.7e-40 Identity = 89/162 (54.94%), Postives = 101/162 (62.35%), Query Frame = 1
BLAST of CSPI05G19400 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 1.5e-39 Identity = 104/262 (39.69%), Postives = 129/262 (49.24%), Query Frame = 1
BLAST of CSPI05G19400 vs. NCBI nr
Match: gi|659109391|ref|XP_008454692.1| (PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo]) HSP 1 Score: 272.3 bits (695), Expect = 6.7e-70 Identity = 147/266 (55.26%), Postives = 166/266 (62.41%), Query Frame = 1
BLAST of CSPI05G19400 vs. NCBI nr
Match: gi|659113203|ref|XP_008456452.1| (PREDICTED: uncharacterized protein LOC103496395 [Cucumis melo]) HSP 1 Score: 258.1 bits (658), Expect = 1.3e-65 Identity = 133/206 (64.56%), Postives = 149/206 (72.33%), Query Frame = 1
BLAST of CSPI05G19400 vs. NCBI nr
Match: gi|659131061|ref|XP_008465488.1| (PREDICTED: uncharacterized protein LOC103503107 [Cucumis melo]) HSP 1 Score: 240.4 bits (612), Expect = 2.8e-60 Identity = 127/228 (55.70%), Postives = 146/228 (64.04%), Query Frame = 1
BLAST of CSPI05G19400 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 232.3 bits (591), Expect = 7.7e-58 Identity = 131/266 (49.25%), Postives = 149/266 (56.02%), Query Frame = 1
BLAST of CSPI05G19400 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 219.5 bits (558), Expect = 5.1e-54 Identity = 116/214 (54.21%), Postives = 130/214 (60.75%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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