CSPI05G19350 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G19350
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrotransposable element Tf2
LocationChr5 : 20622535 .. 20623720 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGTGATATCAAAATTTATGTTGACCAATGCCCAGTTTGCCAACAAAACAAAATACAAGCCTTGTCTCCAGCTGGTTTGTTGCTGCCCCTTCCCAATCCCAACAGAATTTGGGAAGATATATCAATGGATTTCATAGAAGGCTTGCCACGATCTAAGGGGTTTGACATGATCCTTGTGGTAGTAGATCGTCTTAGCAAATATGCTCACTTTTTAACCTTGGGACACCCATTTTCAGCCAAAACAGTAGCCACACTGTTTATAAAGGAAGTGGTTCGTCTCCATGGGTACCCTCGCTCTATTGTATCCGATAGGGACCGTATGTTTTTGAGTCACTTTTGGAAAGAGATGTTCCGTTTGCAAGGAACTCAATTGAAGAGAAGTACGGCCTATCACTCGCAAACGGATGGGCAATCAGAAGTTGTGAACAAGAGTGTGGAGTTGTACTTGCGATGTTTTTGTCATGAAAAACCAACGACATGGAGTGAAAAATTAGCATGGGTAGAGTATTGACACAACACCACCTACCACGCATCCATACAGAATACTCCTTATGCAGTCGTTTATGGACGACCCCCCTCCAATTATTTCATATGGACATCCGAGTTCCACTCCAAATGATTCAGTAGAATCACAGTTGCAGTCTAGAGATGAGCTGCTGATTACTCTAAAGCATCACTTGCAACACGCCCAAGCACAAGTGAAGAATCTTGTGGACATACACCGTCGAGATGTGGTGTTTGACATTGGCGATTGGGTATATTTAGAAATACAACCGTATAAACAGTAGTCATTGGCTAAAAAACGTTACGAAAAGCTGTCACCAAATTTTTTTGGACCATACATGGTATTGGGGAGGATAGGGGAAGTAGCCTATTTGCTAGATCTACCAGATAATGCTCGAATCCACCTTGTTTTCCACATGTCACAACTGAAGAAGGCAGTGGGAGACAAGCATCATGTGCAGCCAAACATTTCCCTACTCAACGACCAAATGGAATTAGTGCTCGAGCCTGAAAATGTGACTGAACTGTGCTGGAATGATACCGAACGTGATTGGGAGTATTTAGTTCAGTGGAAAGATCAACCAGCACACGAAGCCACTTGGGAATCTGTTAGACCTCCAATATTATATCAGTACAGGAGGAGGGGAAATAAGTTTGTTAAGGGGGGAGACGTGTGA

mRNA sequence

ATGAAGAGTGATATCAAAATTTATGTTGACCAATGCCCAGTTTGCCAACAAAACAAAATACAAGCCTTGTCTCCAGCTGGTTTGTTGCTGCCCCTTCCCAATCCCAACAGAATTTGGGAAGATATATCAATGGATTTCATAGAAGGCTTGCCACGATCTAAGGGGTTTGACATGATCCTTGTGGTAGTAGATCGTCTTAGCAAATATGCTCACTTTTTAACCTTGGGACACCCATTTTCAGCCAAAACAGTAGCCACACTGTTTATAAAGGAAGTGGTTCGTCTCCATGGGTACCCTCGCTCTATTGTATCCGATAGGGACCGTATGTTTTTGAGTCACTTTTGGAAAGAGATGTTCCGTTTGCAAGGAACTCAATTGAAGAGAAGTACGGCCTATCACTCGCAAACGGATGGGCAATCAGAAGTTGTGAACAAGAGTGTGGAGTTAATACTCCTTATGCAGTCGTTTATGGACGACCCCCCTCCAATTATTTCATATGGACATCCGAGTTCCACTCCAAATGATTCAGTAGAATCACAGTTGCAGTCTAGAGATGAGCTGCTGATTACTCTAAAGCATCACTTGCAACACGCCCAAGCACAAGTGAAGAATCTTGTGGACATACACCGTCGAGATGTGGTGTTTGACATTGGCGATTGGTCATTGGCTAAAAAACGTTACGAAAAGCTGTCACCAAATTTTTTTGGACCATACATGGTATTGGGGAGGATAGGGGAAGTAGCCTATTTGCTAGATCTACCAGATAATGCTCGAATCCACCTTGTTTTCCACATGTCACAACTGAAGAAGGCAGTGGGAGACAAGCATCATGTGCAGCCAAACATTTCCCTACTCAACGACCAAATGGAATTAGTGCTCGAGCCTGAAAATGTGACTGAACTGTGCTGGAATGATACCGAACGTGATTGGGAGTATTTAGTTCAGTGGAAAGATCAACCAGCACACGAAGCCACTTGGGAATCTGTTAGACCTCCAATATTATATCAGTACAGGAGGAGGGGAAATAAGTTTGTTAAGGGGGGAGACGTGTGA

Coding sequence (CDS)

ATGAAGAGTGATATCAAAATTTATGTTGACCAATGCCCAGTTTGCCAACAAAACAAAATACAAGCCTTGTCTCCAGCTGGTTTGTTGCTGCCCCTTCCCAATCCCAACAGAATTTGGGAAGATATATCAATGGATTTCATAGAAGGCTTGCCACGATCTAAGGGGTTTGACATGATCCTTGTGGTAGTAGATCGTCTTAGCAAATATGCTCACTTTTTAACCTTGGGACACCCATTTTCAGCCAAAACAGTAGCCACACTGTTTATAAAGGAAGTGGTTCGTCTCCATGGGTACCCTCGCTCTATTGTATCCGATAGGGACCGTATGTTTTTGAGTCACTTTTGGAAAGAGATGTTCCGTTTGCAAGGAACTCAATTGAAGAGAAGTACGGCCTATCACTCGCAAACGGATGGGCAATCAGAAGTTGTGAACAAGAGTGTGGAGTTAATACTCCTTATGCAGTCGTTTATGGACGACCCCCCTCCAATTATTTCATATGGACATCCGAGTTCCACTCCAAATGATTCAGTAGAATCACAGTTGCAGTCTAGAGATGAGCTGCTGATTACTCTAAAGCATCACTTGCAACACGCCCAAGCACAAGTGAAGAATCTTGTGGACATACACCGTCGAGATGTGGTGTTTGACATTGGCGATTGGTCATTGGCTAAAAAACGTTACGAAAAGCTGTCACCAAATTTTTTTGGACCATACATGGTATTGGGGAGGATAGGGGAAGTAGCCTATTTGCTAGATCTACCAGATAATGCTCGAATCCACCTTGTTTTCCACATGTCACAACTGAAGAAGGCAGTGGGAGACAAGCATCATGTGCAGCCAAACATTTCCCTACTCAACGACCAAATGGAATTAGTGCTCGAGCCTGAAAATGTGACTGAACTGTGCTGGAATGATACCGAACGTGATTGGGAGTATTTAGTTCAGTGGAAAGATCAACCAGCACACGAAGCCACTTGGGAATCTGTTAGACCTCCAATATTATATCAGTACAGGAGGAGGGGAAATAAGTTTGTTAAGGGGGGAGACGTGTGA
Homology
[Close]
BLAST of CSPI05G19350 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-30
Identity = 96/308 (31.17%), Postives = 144/308 (46.75%), Query Frame = 1 

Query: 8    YVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLP-RSKGFDMILVVVDRL 67
            Y+  C  CQ  K       GLL PLP     W DISMDF+ GLP  S   +MILVVVDR 
Sbjct: 1138 YIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRF 1197

Query: 68   SKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFRLQGTQL 127
            SK AHF+       A  +  L  + +   HG+PR+I SDRD    +  ++E+ +  G + 
Sbjct: 1198 SKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKS 1257

Query: 128  KRSTAYHSQTDGQSEVVNKSVELILLMQS---------------FMDDPPPI-------- 187
              S+A H QTDGQSE   +++  +L   +               F+ +  P         
Sbjct: 1258 TMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPF 1317

Query: 188  -ISYGHPSSTPNDSVESQLQSRD-----------ELLITLKHHLQHAQAQVKNLVDIHRR 247
             I  G+  +TP    + ++ +R             L I  K  L+HAQ +++   +  R+
Sbjct: 1318 EIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRK 1377

Query: 248  DVVFDIGDWSLA-------KKRYEKLSPNFFGPYMVLGRIGEVAYLLDLPDNARIHLVFH 273
             ++ +IGD  L        K  Y K+   + GP+ V+ +I + AY LDL  + + H V +
Sbjct: 1378 PLLLNIGDHVLVHRDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVIN 1437

[Close]
BLAST of CSPI05G19350 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-29
Identity = 94/305 (30.82%), Postives = 143/305 (46.89%), Query Frame = 1 

Query: 8    YVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLP-RSKGFDMILVVVDRL 67
            Y+  C  CQ  K       GLL PLP     W DISMDF+ GLP  S   +MILVVVDR 
Sbjct: 1164 YIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRF 1223

Query: 68   SKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFRLQGTQL 127
            SK AHF+       A  +  L  + +   HG+PR+I SDRD    +  ++E+ +  G + 
Sbjct: 1224 SKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKS 1283

Query: 128  KRSTAYHSQTDGQSEVVNKSVELILL------MQSF------------------MDDPPP 187
              S+A H QTDGQSE   +++  +L       +Q++                  +   P 
Sbjct: 1284 TMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPF 1343

Query: 188  IISYGHPSSTPNDSVESQLQSRD-----------ELLITLKHHLQHAQAQVKNLVDIHRR 247
             I  G+  +TP    + ++ +R             L I  K  L+HAQ +++   +  R+
Sbjct: 1344 EIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRK 1403

Query: 248  DVVFDIGDWSLA-------KKRYEKLSPNFFGPYMVLGRIGEVAYLLDLPDNARIHLVFH 270
             ++ +IGD  L        K  Y K+   + GP+ V+ +I + AY LDL  + + H V +
Sbjct: 1404 PLLLNIGDHVLVHRDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVIN 1463

[Close]
BLAST of CSPI05G19350 vs. Swiss-Prot
Match: TF28_SCHPO (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.9e-26
Identity = 59/151 (39.07%), Postives = 84/151 (55.63%), Query Frame = 1 

Query: 1    MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
            ++  I+ YV  C  CQ NK +   P G L P+P   R WE +SMDFI  LP S G++ + 
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALF 1005

Query: 61   VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
            VVVDR SK A  +      +A+  A +F + V+   G P+ I++D D +F S  WK+   
Sbjct: 1006 VVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAH 1065

Query: 121  LQGTQLKRSTAYHSQTDGQSEVVNKSVELIL 152
                 +K S  Y  QTDGQ+E  N++VE +L
Sbjct: 1066 KYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

[Close]
BLAST of CSPI05G19350 vs. Swiss-Prot
Match: TF25_SCHPO (Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-5 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.9e-26
Identity = 59/151 (39.07%), Postives = 84/151 (55.63%), Query Frame = 1 

Query: 1    MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
            ++  I+ YV  C  CQ NK +   P G L P+P   R WE +SMDFI  LP S G++ + 
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALF 1005

Query: 61   VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
            VVVDR SK A  +      +A+  A +F + V+   G P+ I++D D +F S  WK+   
Sbjct: 1006 VVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAH 1065

Query: 121  LQGTQLKRSTAYHSQTDGQSEVVNKSVELIL 152
                 +K S  Y  QTDGQ+E  N++VE +L
Sbjct: 1066 KYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

[Close]
BLAST of CSPI05G19350 vs. Swiss-Prot
Match: TF24_SCHPO (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.9e-26
Identity = 59/151 (39.07%), Postives = 84/151 (55.63%), Query Frame = 1 

Query: 1    MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
            ++  I+ YV  C  CQ NK +   P G L P+P   R WE +SMDFI  LP S G++ + 
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALF 1005

Query: 61   VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
            VVVDR SK A  +      +A+  A +F + V+   G P+ I++D D +F S  WK+   
Sbjct: 1006 VVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAH 1065

Query: 121  LQGTQLKRSTAYHSQTDGQSEVVNKSVELIL 152
                 +K S  Y  QTDGQ+E  N++VE +L
Sbjct: 1066 KYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

[Close]
BLAST of CSPI05G19350 vs. TrEMBL
Match: A5CAG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 5.4e-90
Identity = 182/376 (48.40%), Postives = 242/376 (64.36%), Query Frame = 1 

Query: 1   MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
           MK+DIK +V++C VCQQNK   LS AGLL PLP P++IW+D++MDFIEGLP+S+G++ IL
Sbjct: 613 MKNDIKEFVEKCLVCQQNKTLTLSLAGLLQPLPIPDKIWDDVTMDFIEGLPKSEGYNFIL 672

Query: 61  VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
           VVVDRLSKYAHF  L HPF A+TVA +F+++VV+LHG+PRSI+SDRD++FLS FW E+FR
Sbjct: 673 VVVDRLSKYAHFSLLKHPFXAQTVAAIFVRDVVKLHGFPRSIISDRDKVFLSRFWIELFR 732

Query: 121 LQGTQLKRSTAYHSQTDGQSEVVNKSVELILLMQSFMD---------------------- 180
           LQGT L  STAYH QTDGQ+EVVN+ VE  L   S+                        
Sbjct: 733 LQGTSLXHSTAYHXQTDGQTEVVNRCVETYLRCFSYNKPGRWSTWISWAEYWYNTTFHSS 792

Query: 181 ------------DPPPIISYGHPSSTPNDSVESQLQSRDELLITLKHHLQHAQAQVKNLV 240
                       DPPP+I +G   ST   +V+  LQ RD +L  LK HL  AQ+++K+  
Sbjct: 793 TNTTPFRAVYGRDPPPLIRFG-SDSTSVLAVDQLLQERDLILNELKDHLXCAQSKMKSSX 852

Query: 241 DIHRRDVVFDIGDW-----------SLAKKRYEKLSPNFFGPYMVLGRIGEVAYLLDLPD 300
           D HR  V F++GD+           SLAK+  EKLSP +FGPY V+ +I  VAY L+LP 
Sbjct: 853 DAHRXAVQFEVGDFVYIKLRPYXLRSLAKRPNEKLSPRYFGPYKVVXQIXXVAYRLELPX 912

Query: 301 NARIHLVFHMSQLKKAVGDKHHVQPNISLLNDQMELVLEPENVTEL--CWNDTERDWEYL 330
           +  IH VFH+S LK+A+G     QP   +L + +E ++EP+ V ++    N+ +   E L
Sbjct: 913 STTIHXVFHVSXLKRALGSADLCQPLSPILVEDLEWLVEPDQVLDIHQSPNNNQLGIEVL 972

[Close]
BLAST of CSPI05G19350 vs. TrEMBL
Match: E2DMZ5_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 5.2e-85
Identity = 189/427 (44.26%), Postives = 240/427 (56.21%), Query Frame = 1 

Query: 1    MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
            MK D+  +V  C +CQQ K   LSPAGLL PLP P  IWEDISMDF+EGLP+S+G+D IL
Sbjct: 1137 MKKDVTTFVQNCQICQQFKTSTLSPAGLLQPLPIPLAIWEDISMDFVEGLPKSQGWDTIL 1196

Query: 61   VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
            VVVDRLSKYAHF+TL HPF+A TVA +FIKE+V+LHG+P +IVSDRD++F+S FWKE+F+
Sbjct: 1197 VVVDRLSKYAHFITLKHPFTAPTVAAVFIKEIVKLHGFPSTIVSDRDKVFMSLFWKELFK 1256

Query: 121  LQGTQLKRSTAYHSQTDGQSEVVNKSVELIL----------------------------- 180
            LQGT L RSTAYH Q+DGQ+EVVNKS+E  L                             
Sbjct: 1257 LQGTLLHRSTAYHPQSDGQTEVVNKSLEAYLRCFCNGRPKAWAQWISWAEYWYNTSTHSS 1316

Query: 181  -----LMQSFMDDPPPIISYGHPSSTPNDSVESQLQSRDELLITLKHHLQHAQAQVKNLV 240
                     +  D PP+  +    ST   S+E QL  RD  L  LK HL  AQ  +K   
Sbjct: 1317 SHFTPFKIVYGRDSPPLFRF-EKGSTAIFSLEEQLLDRDATLDELKFHLLEAQNSMKIQE 1376

Query: 241  DIHRRDVVFDIG-----------DWSLAKKRYEKLSPNFFGPYMVLGRIGEVAYLLDLPD 300
            D HRR V F+ G             SLAKKR EKL+P F+GP+ VL RIG+VAY L LP 
Sbjct: 1377 DKHRRAVHFEPGAMVYLKIQPYRHQSLAKKRNEKLAPRFYGPFSVLKRIGQVAYQLQLPL 1436

Query: 301  NARIHLVFHMSQLKKAVGDKHHVQPNISLLNDQMELVLEPENVTELCWNDTE--RDWEYL 351
             A++H VFH+SQLKKAVG           L + + L  +PE++  +  +  +     E L
Sbjct: 1437 GAKLHPVFHISQLKKAVGSLQSSPTIPPQLTNDLVLDAQPESLLNIRSHPQKPAEVTEVL 1496

[Close]
BLAST of CSPI05G19350 vs. TrEMBL
Match: J3SDF5_BETVU (Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 6.8e-85
Identity = 185/417 (44.36%), Postives = 240/417 (57.55%), Query Frame = 1 

Query: 1    MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
            M+ ++  YV QC +CQQ K+    P GLL PLP P+ +WEDISMDFIEGLP SKG D IL
Sbjct: 1204 MRQEVARYVHQCLICQQQKVSQQHPRGLLQPLPIPSLVWEDISMDFIEGLPVSKGVDTIL 1263

Query: 61   VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
            V+VDRLSKYAHFLTL HPF+A  VA LF+KEVVRLHG+P SIVSDRDR+FLS FWKE+FR
Sbjct: 1264 VIVDRLSKYAHFLTLRHPFTALMVADLFVKEVVRLHGFPSSIVSDRDRIFLSLFWKELFR 1323

Query: 121  LQGTQLKRSTAYHSQTDGQSEVVNKSVELIL-----------------LMQSFMDDP--- 180
            L GT LKRS+AYH QTDGQ+E+VN+++E  L                    S+   P   
Sbjct: 1324 LHGTTLKRSSAYHPQTDGQTEIVNRALETYLRCFVGGHPRSWAKWLPWAEFSYNTSPHTS 1383

Query: 181  -------------PPIISYGHPSSTPNDSVESQLQSRDELLITLKHHLQHAQAQVKNLVD 240
                         PP +       T  +S+E+ LQ RD ++  L+ +L  AQ ++K+  D
Sbjct: 1384 TKMSPFKVLYGRDPPHVVRAPKGQTSVESLEAMLQDRDAIIDDLQVNLVRAQQRMKHYAD 1443

Query: 241  IHRRDVVFDIGD-----------WSLAKKRYEKLSPNFFGPYMVLGRIGEVAYLLDLPDN 300
              R +V F +GD            SLAK+ +EKL+P F+GP+ VL RIG  AY L LP +
Sbjct: 1444 GSRTEVEFQVGDAVFLRLQPYRQRSLAKRPFEKLAPRFYGPFTVLQRIGATAYKLQLPPS 1503

Query: 301  ARIHLVFHMSQLKKAVGDKHHVQPNISLLNDQMELVLEPENVTEL--CWNDTERDWEYLV 344
            ++IH VFH+S LKK VG+   +      ++  MELV+EPE + ++       +   E L+
Sbjct: 1504 SKIHPVFHVSLLKKVVGNTPVLPTIPPHIDVDMELVVEPEELLDVRQIRQGKQTFTECLI 1563

[Close]
BLAST of CSPI05G19350 vs. TrEMBL
Match: G9FIF5_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 7.6e-84
Identity = 182/378 (48.15%), Postives = 230/378 (60.85%), Query Frame = 1 

Query: 1    MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
            MK D+  ++ +C VCQQNK  +L+PAGLL PLP P  IWED+SMDF+EGLP+S G+D IL
Sbjct: 973  MKQDVITFIQECAVCQQNKTSSLAPAGLLQPLPIPTLIWEDVSMDFVEGLPKSGGWDSIL 1032

Query: 61   VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
            VVVDRLSKY HF+ L HPFSA TVA +FIKEVV+LHG+P +IVSDRD++F+S FWKE+F+
Sbjct: 1033 VVVDRLSKYGHFIGLRHPFSAATVAQVFIKEVVKLHGFPTTIVSDRDKVFMSIFWKELFK 1092

Query: 121  LQGTQLKRSTAYHSQTDGQSEVVNKSVELILLMQSFMDDPPPI----------------- 180
            LQ T L RSTAYH Q DGQ+EVVNKSVE  L  + F+   P                   
Sbjct: 1093 LQRTLLHRSTAYHPQLDGQTEVVNKSVEASL--RCFIQGKPHTWANWLCWAEYWYNTFKH 1152

Query: 181  ---------ISYGHP---------SSTPNDSVESQLQSRDELLITLKHHLQHAQAQVKNL 240
                     + YG P         +ST   ++E QL  RD +L  LK HL  AQ  ++  
Sbjct: 1153 SATNFTPFEVVYGRPPPPLYRYKRNSTAVAALEDQLLVRDAVLDELKLHLVTAQNNMRTQ 1212

Query: 241  VDIHRRDVVFDIGDW-----------SLAKKRYEKLSPNFFGPYMVLGRIGEVAYLLDLP 300
             D HRR++ F +GD            SLAK+  EKL+P ++GP+ VL RIG VAY LDLP
Sbjct: 1213 EDKHRREMHFGVGDMVYLRLQPYKQRSLAKRLNEKLAPRYYGPFPVLKRIGTVAYELDLP 1272

Query: 301  DNARIHLVFHMSQLKKAVGDKHHVQPNISLLNDQMELVLEPENVTELCWNDTER--DWEY 331
             +++IH VFH+SQL+KAVG          LL   + L   P  V  +  N   +    E 
Sbjct: 1273 PHSKIHPVFHISQLRKAVGTAPVFPVLPPLLTTDLVLPSSPSQVLGIRPNPLNQAAPAEI 1332

[Close]
BLAST of CSPI05G19350 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 9.9e-84
Identity = 173/305 (56.72%), Postives = 199/305 (65.25%), Query Frame = 1 

Query: 1    MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
            MK+DIKIYVDQCPVCQQNK QALSPAGLL PLP P+RIWEDISMDFIEGLPRS+ FD +L
Sbjct: 897  MKNDIKIYVDQCPVCQQNKTQALSPAGLLQPLPIPSRIWEDISMDFIEGLPRSRTFDSVL 956

Query: 61   VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
            VVVD+LSKYAHF+ L HPFSAKTVA  F KE+                            
Sbjct: 957  VVVDQLSKYAHFVALRHPFSAKTVAVEFTKEI---------------------------- 1016

Query: 121  LQGTQLKRSTAYHSQTDGQSEVVNKSVELIL------LMQSFMDD--------------- 180
              GT+LKRSTAYH QTDGQ+EVVNK +EL L        +++ D                
Sbjct: 1017 --GTKLKRSTAYHPQTDGQTEVVNKCLELYLRCLCQDRSKTWSDKLAWAEYWYNTNYHAS 1076

Query: 181  -------------PPPIISYGHPSSTPNDSVESQLQSRDELLITLKHHLQHAQAQVKNLV 240
                         PPPIISYG  ++TPNDSVE QLQ+RDE L TLK HLQHAQ Q+K   
Sbjct: 1077 IKTTPYAVVYGQPPPPIISYGQGNTTPNDSVEFQLQTRDETLATLKRHLQHAQDQMKKFA 1136

Query: 241  DIHRRDVVFDIGDW-----------SLAKKRYEKLSPNFFGPYMVLGRIGEVAYLLDLPD 261
            ++HRRDVVFDI DW           S+AK+R +KLSP +FGPYMV+GR+GEVAYLLDLPD
Sbjct: 1137 NVHRRDVVFDIEDWVYLKLQPYRQKSVAKRRCDKLSPKYFGPYMVMGRVGEVAYLLDLPD 1171

[Close]
BLAST of CSPI05G19350 vs. NCBI nr
Match: gi|147807720|emb|CAN66553.1| (hypothetical protein VITISV_018166 [Vitis vinifera])

HSP 1 Score: 339.3 bits (869), Expect = 7.8e-90
Identity = 182/376 (48.40%), Postives = 242/376 (64.36%), Query Frame = 1 

Query: 1   MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
           MK+DIK +V++C VCQQNK   LS AGLL PLP P++IW+D++MDFIEGLP+S+G++ IL
Sbjct: 613 MKNDIKEFVEKCLVCQQNKTLTLSLAGLLQPLPIPDKIWDDVTMDFIEGLPKSEGYNFIL 672

Query: 61  VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
           VVVDRLSKYAHF  L HPF A+TVA +F+++VV+LHG+PRSI+SDRD++FLS FW E+FR
Sbjct: 673 VVVDRLSKYAHFSLLKHPFXAQTVAAIFVRDVVKLHGFPRSIISDRDKVFLSRFWIELFR 732

Query: 121 LQGTQLKRSTAYHSQTDGQSEVVNKSVELILLMQSFMD---------------------- 180
           LQGT L  STAYH QTDGQ+EVVN+ VE  L   S+                        
Sbjct: 733 LQGTSLXHSTAYHXQTDGQTEVVNRCVETYLRCFSYNKPGRWSTWISWAEYWYNTTFHSS 792

Query: 181 ------------DPPPIISYGHPSSTPNDSVESQLQSRDELLITLKHHLQHAQAQVKNLV 240
                       DPPP+I +G   ST   +V+  LQ RD +L  LK HL  AQ+++K+  
Sbjct: 793 TNTTPFRAVYGRDPPPLIRFG-SDSTSVLAVDQLLQERDLILNELKDHLXCAQSKMKSSX 852

Query: 241 DIHRRDVVFDIGDW-----------SLAKKRYEKLSPNFFGPYMVLGRIGEVAYLLDLPD 300
           D HR  V F++GD+           SLAK+  EKLSP +FGPY V+ +I  VAY L+LP 
Sbjct: 853 DAHRXAVQFEVGDFVYIKLRPYXLRSLAKRPNEKLSPRYFGPYKVVXQIXXVAYRLELPX 912

Query: 301 NARIHLVFHMSQLKKAVGDKHHVQPNISLLNDQMELVLEPENVTEL--CWNDTERDWEYL 330
           +  IH VFH+S LK+A+G     QP   +L + +E ++EP+ V ++    N+ +   E L
Sbjct: 913 STTIHXVFHVSXLKRALGSADLCQPLSPILVEDLEWLVEPDQVLDIHQSPNNNQLGIEVL 972

[Close]
BLAST of CSPI05G19350 vs. NCBI nr
Match: gi|731338584|ref|XP_010680400.1| (PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 339.3 bits (869), Expect = 7.8e-90
Identity = 178/376 (47.34%), Postives = 237/376 (63.03%), Query Frame = 1 

Query: 1    MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
            M+ ++  YV  C +CQQNK    +PAGLL PLP PN++WEDI+MDF+EGLP S+G D IL
Sbjct: 1153 MRKNVAQYVKDCQICQQNKTSTQNPAGLLQPLPPPNQVWEDITMDFVEGLPPSRGVDTIL 1212

Query: 61   VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
            VVVDR +K+AHFL L HPF+A TVA  FIKE+VRLHG+P SI+SDRDR+F+S FWKE+FR
Sbjct: 1213 VVVDRFTKFAHFLGLKHPFTAATVAGTFIKEIVRLHGFPASIISDRDRVFMSLFWKELFR 1272

Query: 121  LQGTQLKRSTAYHSQTDGQSEVVNKSVELIL----------------------------- 180
            LQGT+LKRSTAYH QTDGQSE VNK++E  L                             
Sbjct: 1273 LQGTKLKRSTAYHPQTDGQSENVNKALETYLRCFVNGQPRKWAGWLPWVEFWYNTSPHVS 1332

Query: 181  -----LMQSFMDDPPPIISYGHPSSTPNDSVESQLQSRDELLITLKHHLQHAQAQVKNLV 240
                     +  DPPP++  GH + TP DS++S LQ RD +L  L+ +L  AQ ++K   
Sbjct: 1333 TKMTPFKALYGRDPPPLVRTGH-NQTPVDSLDSYLQERDAVLDDLRVNLLRAQQKMKFWA 1392

Query: 241  DIHRRDVVFDIGDW-----------SLAKKRYEKLSPNFFGPYMVLGRIGEVAYLLDLPD 300
            D  RRD++ ++G +           SLA++ YEKL+  ++GPY VL RIG VAY LDLP 
Sbjct: 1393 DKRRRDILLEVGSFVYLKLQPYRQKSLARRPYEKLAARYYGPYQVLERIGAVAYRLDLPA 1452

Query: 301  NARIHLVFHMSQLKKAVGDKHHVQPNISLLNDQMELVLEPENVTELCWN--DTERDWEYL 330
             ++IH VFH+SQLK A G+ H        L   +EL++EPE + ++ +     ++  E L
Sbjct: 1453 TSKIHPVFHVSQLKPAAGNIHQPSQLPEQLTQDLELIVEPEALLDVRYGAPGHKKPLEVL 1512

[Close]
BLAST of CSPI05G19350 vs. NCBI nr
Match: gi|719968486|ref|XP_010264998.1| (PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera])

HSP 1 Score: 323.9 bits (829), Expect = 3.4e-85
Identity = 176/374 (47.06%), Postives = 233/374 (62.30%), Query Frame = 1 

Query: 1    MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
            +K  ++ +V  C VCQ++K +A+SP GLL PLP P +IWEDI+MDFIE LP+SKGFD I+
Sbjct: 1234 IKCFVQEFVQACDVCQRSKYEAMSPVGLLQPLPIPEQIWEDIAMDFIEALPKSKGFDTIM 1293

Query: 61   VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
            VVVDRLSKYAHF+ L HPFSA TVA  F+  +VRLHG PRSIVSDRD++F+S FW+E+F 
Sbjct: 1294 VVVDRLSKYAHFIPLSHPFSALTVAQAFLHNIVRLHGIPRSIVSDRDKVFMSFFWRELFT 1353

Query: 121  LQGTQLKRSTAYHSQTDGQSEVVNKSVELIL----------------------------- 180
            LQG++L+RS+AYH Q DGQSEVVN+ +E  L                             
Sbjct: 1354 LQGSELRRSSAYHPQADGQSEVVNRCLETYLRCFAADSPSRWSSWLSWAEYSYNTSFHTA 1413

Query: 181  -----LMQSFMDDPPPIISYGHPSSTPNDSVESQLQSRDELLITLKHHLQHAQAQVKNLV 240
                     +  DPPP+I Y    ST N  VE+ L  RD +L  L+ HL  AQ ++K+  
Sbjct: 1414 AGMTPFKVVYGRDPPPLIRY-ELGSTANADVEAVLLQRDAILGELRTHLHRAQQKMKDST 1473

Query: 241  DIHRRDVVFDIGDW-----------SLAKKRYEKLSPNFFGPYMVLGRIGEVAYLLDLPD 300
            D +RRDV FD+GDW           SL+++  EKL+P F+GP+ V+ RIG VAY L LP 
Sbjct: 1474 DANRRDVNFDVGDWVYVRVRPYRQQSLSRRVDEKLAPRFYGPFAVVERIGAVAYKLQLPL 1533

Query: 301  NARIHLVFHMSQLKKAVGDKHHVQPNISLLNDQMELVLEPENVTELCWNDTE--RDWEYL 328
            +ARIHLVFH+SQLKKA+G+       +S L+   E+++EP  V  +  +        E L
Sbjct: 1534 DARIHLVFHVSQLKKAIGNHLSSPVILSTLSADTEMLVEPAVVRGVRPSTMPGVTGSEVL 1593

[Close]
BLAST of CSPI05G19350 vs. NCBI nr
Match: gi|261865347|gb|ACY01928.1| (hypothetical protein [Beta vulgaris])

HSP 1 Score: 322.8 bits (826), Expect = 7.5e-85
Identity = 189/427 (44.26%), Postives = 240/427 (56.21%), Query Frame = 1 

Query: 1    MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
            MK D+  +V  C +CQQ K   LSPAGLL PLP P  IWEDISMDF+EGLP+S+G+D IL
Sbjct: 1137 MKKDVTTFVQNCQICQQFKTSTLSPAGLLQPLPIPLAIWEDISMDFVEGLPKSQGWDTIL 1196

Query: 61   VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
            VVVDRLSKYAHF+TL HPF+A TVA +FIKE+V+LHG+P +IVSDRD++F+S FWKE+F+
Sbjct: 1197 VVVDRLSKYAHFITLKHPFTAPTVAAVFIKEIVKLHGFPSTIVSDRDKVFMSLFWKELFK 1256

Query: 121  LQGTQLKRSTAYHSQTDGQSEVVNKSVELIL----------------------------- 180
            LQGT L RSTAYH Q+DGQ+EVVNKS+E  L                             
Sbjct: 1257 LQGTLLHRSTAYHPQSDGQTEVVNKSLEAYLRCFCNGRPKAWAQWISWAEYWYNTSTHSS 1316

Query: 181  -----LMQSFMDDPPPIISYGHPSSTPNDSVESQLQSRDELLITLKHHLQHAQAQVKNLV 240
                     +  D PP+  +    ST   S+E QL  RD  L  LK HL  AQ  +K   
Sbjct: 1317 SHFTPFKIVYGRDSPPLFRF-EKGSTAIFSLEEQLLDRDATLDELKFHLLEAQNSMKIQE 1376

Query: 241  DIHRRDVVFDIG-----------DWSLAKKRYEKLSPNFFGPYMVLGRIGEVAYLLDLPD 300
            D HRR V F+ G             SLAKKR EKL+P F+GP+ VL RIG+VAY L LP 
Sbjct: 1377 DKHRRAVHFEPGAMVYLKIQPYRHQSLAKKRNEKLAPRFYGPFSVLKRIGQVAYQLQLPL 1436

Query: 301  NARIHLVFHMSQLKKAVGDKHHVQPNISLLNDQMELVLEPENVTELCWNDTE--RDWEYL 351
             A++H VFH+SQLKKAVG           L + + L  +PE++  +  +  +     E L
Sbjct: 1437 GAKLHPVFHISQLKKAVGSLQSSPTIPPQLTNDLVLDAQPESLLNIRSHPQKPAEVTEVL 1496

[Close]
BLAST of CSPI05G19350 vs. NCBI nr
Match: gi|387965727|gb|AFK13856.1| (Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 322.4 bits (825), Expect = 9.8e-85
Identity = 185/417 (44.36%), Postives = 240/417 (57.55%), Query Frame = 1 

Query: 1    MKSDIKIYVDQCPVCQQNKIQALSPAGLLLPLPNPNRIWEDISMDFIEGLPRSKGFDMIL 60
            M+ ++  YV QC +CQQ K+    P GLL PLP P+ +WEDISMDFIEGLP SKG D IL
Sbjct: 1204 MRQEVARYVHQCLICQQQKVSQQHPRGLLQPLPIPSLVWEDISMDFIEGLPVSKGVDTIL 1263

Query: 61   VVVDRLSKYAHFLTLGHPFSAKTVATLFIKEVVRLHGYPRSIVSDRDRMFLSHFWKEMFR 120
            V+VDRLSKYAHFLTL HPF+A  VA LF+KEVVRLHG+P SIVSDRDR+FLS FWKE+FR
Sbjct: 1264 VIVDRLSKYAHFLTLRHPFTALMVADLFVKEVVRLHGFPSSIVSDRDRIFLSLFWKELFR 1323

Query: 121  LQGTQLKRSTAYHSQTDGQSEVVNKSVELIL-----------------LMQSFMDDP--- 180
            L GT LKRS+AYH QTDGQ+E+VN+++E  L                    S+   P   
Sbjct: 1324 LHGTTLKRSSAYHPQTDGQTEIVNRALETYLRCFVGGHPRSWAKWLPWAEFSYNTSPHTS 1383

Query: 181  -------------PPIISYGHPSSTPNDSVESQLQSRDELLITLKHHLQHAQAQVKNLVD 240
                         PP +       T  +S+E+ LQ RD ++  L+ +L  AQ ++K+  D
Sbjct: 1384 TKMSPFKVLYGRDPPHVVRAPKGQTSVESLEAMLQDRDAIIDDLQVNLVRAQQRMKHYAD 1443

Query: 241  IHRRDVVFDIGD-----------WSLAKKRYEKLSPNFFGPYMVLGRIGEVAYLLDLPDN 300
              R +V F +GD            SLAK+ +EKL+P F+GP+ VL RIG  AY L LP +
Sbjct: 1444 GSRTEVEFQVGDAVFLRLQPYRQRSLAKRPFEKLAPRFYGPFTVLQRIGATAYKLQLPPS 1503

Query: 301  ARIHLVFHMSQLKKAVGDKHHVQPNISLLNDQMELVLEPENVTEL--CWNDTERDWEYLV 344
            ++IH VFH+S LKK VG+   +      ++  MELV+EPE + ++       +   E L+
Sbjct: 1504 SKIHPVFHVSLLKKVVGNTPVLPTIPPHIDVDMELVVEPEELLDVRQIRQGKQTFTECLI 1563

The following BLAST results are available for this feature:
BLAST of CSPI05G19350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YG31B_YEAST1.4e-3031.17Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
YI31B_YEAST1.2e-2930.82Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
TF28_SCHPO7.9e-2639.07Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF25_SCHPO7.9e-2639.07Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF24_SCHPO7.9e-2639.07Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
BLAST of CSPI05G19350 vs. TrEMBL
Match NameE-valueIdentityDescription
A5CAG1_VITVI5.4e-9048.40Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1[more]
E2DMZ5_BETVU5.2e-8544.26Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1[more]
J3SDF5_BETVU6.8e-8544.36Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1[more]
G9FIF5_BETVU7.6e-8448.15Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1[more]
E5GC18_CUCME9.9e-8456.72Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CSPI05G19350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G19350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147807720|emb|CAN66553.1|7.8e-9048.40hypothetical protein VITISV_018166 [Vitis vinifera][more]
gi|731338584|ref|XP_010680400.1|7.8e-9047.34PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Beta vulgaris subsp. vulgari... [more]
gi|719968486|ref|XP_010264998.1|3.4e-8547.06PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera][more]
gi|261865347|gb|ACY01928.1|7.5e-8544.26hypothetical protein [Beta vulgaris][more]
gi|387965727|gb|AFK13856.1|9.8e-8544.36Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
IPR016197Chromo-like_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G19350.1CSPI05G19350.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 41..147
score: 1.3
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 31..209
score: 15
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 34..211
score: 1.2
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 31..153
score: 5.46
IPR016197Chromo domain-likeunknownSSF54160Chromo domain-likecoord: 258..329
score: 4.5
NoneNo IPR availableGENE3DG3DSA:2.40.50.40coord: 307..329
score: 1.
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 1..330
score: 2.4E
NoneNo IPR availablePANTHERPTHR24559:SF186SUBFAMILY NOT NAMEDcoord: 1..330
score: 2.4E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G19350Bottle gourd (USVL1VR-Ls)cpilsiB329
CSPI05G19350Melon (DHL92) v3.6.1cpimedB331
CSPI05G19350Cucumber (Gy14) v2cgybcpiB225
CSPI05G19350Silver-seed gourdcarcpiB0464
CSPI05G19350Silver-seed gourdcarcpiB0915
CSPI05G19350Silver-seed gourdcarcpiB0990
CSPI05G19350Cucumber (Chinese Long) v3cpicucB284
CSPI05G19350Watermelon (97103) v2cpiwmbB358
CSPI05G19350Wax gourdcpiwgoB453
CSPI05G19350Cucumber (Gy14) v1cgycpiB421
CSPI05G19350Cucurbita maxima (Rimu)cmacpiB306
CSPI05G19350Cucurbita maxima (Rimu)cmacpiB738
CSPI05G19350Cucurbita moschata (Rifu)cmocpiB298
CSPI05G19350Cucurbita moschata (Rifu)cmocpiB730
CSPI05G19350Cucumber (Chinese Long) v2cpicuB239
CSPI05G19350Melon (DHL92) v3.5.1cpimeB342
CSPI05G19350Watermelon (Charleston Gray)cpiwcgB388
CSPI05G19350Watermelon (97103) v1cpiwmB425
CSPI05G19350Cucurbita pepo (Zucchini)cpecpiB179
CSPI05G19350Cucurbita pepo (Zucchini)cpecpiB422