CSPI05G18940 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G18940
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr5 : 20130323 .. 20131113 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAGACAAGAATTGAAGAGAGGTTGGAAAACCACGAACAAGAACTCAGCAAGATATCAACAATGGAAGACAAACTTACATCGATGTCGCAAAACATGAAGAACCTGCAAGCTCAAGTGGAGAAAACTCACCAGATGGTGATGATTTTCAAGGAGACAATGGAGAAGGAACGAGTGCTGGCGAGTGGGAAGTCAGTCGAGTCTTCCGAACAAGAGACGTCGACATTGAAACCGGCCGAGGGAGAAAGTTCGGTGAGCAAGGAAATCAAAAACAACACGGTGGAAAGGAAAGCTGACAACGACGGAGAGAACAACGATCGAAACAAATTCAAGAAGGTTGATATGCTAGTGTTTAATGGGGACGACCCGGATTCCTGACTCTTTCGGCGGACAAATATTTCAATATACACAAGTTAACTGATTCGGAAAAACTTACGGTAGCCTCGATTAGTTTTGAAGGTCCGACACTTAACTGGTATTGCTCACAAGAAGAGAGAGATAAGTTTACCGATTGGTTAAACTTAAAGGAACGCCTATTAAGCCGATTCCGGTCATCCCGCCAAGAATCTCTCTGTGGCCGATTTTTGCGAATTCGACAGGAAACAAGCGTGGAAGAATACCGAAATCTTTTCGATAAATGGGTTGCACCAATATCGGATATTCTGGAGAAGATTGTGGAGGAAACATTTATGGAAGGGTTGTTACCGTGGATTAAGGTGGAGACGAAATTTTGCCGACCACAGAAATTAGCGGAGATGATGAAATACGTGCAGATGGTGGAGAATTAG

mRNA sequence

ATGGTGCAGACAAGAATTGAAGAGAGGTTGGAAAACCACGAACAAGAACTCAGCAAGATATCAACAATGGAAGACAAACTTACATCGATGTCGCAAAACATGAAGAACCTGCAAGCTCAAGTGGAGAAAACTCACCAGATGGTGATGATTTTCAAGGAGACAATGGAGAAGGAACGAGTGCTGGCGAGTGGGAAGTCAGTCGAGTCTTCCGAACAAGAGACGTCGACATTGAAACCGGCCGAGGGAGAAAGTTCGGTGAGCAAGGAAATCAAAAACAACACGGTGGAAAGGAAAGCTGACAACGACGGAGAGAACAACGATCGAAACAAATTCAAGAAGTTAACTGATTCGGAAAAACTTACGGTAGCCTCGATTAGTTTTGAAGGTCCGACACTTAACTGGTATTGCTCACAAGAAGAGAGAGATAAGTTTACCGATTGGTTAAACTTAAAGGAACGCCTATTAAGCCGATTCCGGTCATCCCGCCAAGAATCTCTCTGTGGCCGATTTTTGCGAATTCGACAGGAAACAAGCGTGGAAGAATACCGAAATCTTTTCGATAAATGGGTTGCACCAATATCGGATATTCTGGAGAAGATTGTGGAGGAAACATTTATGGAAGGGTTGTTACCGTGGATTAAGGTGGAGACGAAATTTTGCCGACCACAGAAATTAGCGGAGATGATGAAATACGTGCAGATGGTGGAGAATTAG

Coding sequence (CDS)

ATGGTGCAGACAAGAATTGAAGAGAGGTTGGAAAACCACGAACAAGAACTCAGCAAGATATCAACAATGGAAGACAAACTTACATCGATGTCGCAAAACATGAAGAACCTGCAAGCTCAAGTGGAGAAAACTCACCAGATGGTGATGATTTTCAAGGAGACAATGGAGAAGGAACGAGTGCTGGCGAGTGGGAAGTCAGTCGAGTCTTCCGAACAAGAGACGTCGACATTGAAACCGGCCGAGGGAGAAAGTTCGGTGAGCAAGGAAATCAAAAACAACACGGTGGAAAGGAAAGCTGACAACGACGGAGAGAACAACGATCGAAACAAATTCAAGAAGTTAACTGATTCGGAAAAACTTACGGTAGCCTCGATTAGTTTTGAAGGTCCGACACTTAACTGGTATTGCTCACAAGAAGAGAGAGATAAGTTTACCGATTGGTTAAACTTAAAGGAACGCCTATTAAGCCGATTCCGGTCATCCCGCCAAGAATCTCTCTGTGGCCGATTTTTGCGAATTCGACAGGAAACAAGCGTGGAAGAATACCGAAATCTTTTCGATAAATGGGTTGCACCAATATCGGATATTCTGGAGAAGATTGTGGAGGAAACATTTATGGAAGGGTTGTTACCGTGGATTAAGGTGGAGACGAAATTTTGCCGACCACAGAAATTAGCGGAGATGATGAAATACGTGCAGATGGTGGAGAATTAG

Homology

[Close]

BLAST of CSPI05G18940 vs. TrEMBL
Match: W9QTX5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013924 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-17
Identity = 73/242 (30.17%), Postives = 133/242 (54.96%), Query Frame = 1


Query: 9    RLENHEQELSK--ISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKS 68
            R + HE+E ++      + +L  + +++K +  ++E+  ++++   + + ++R L + + 
Sbjct: 776  RTDGHEKEKTEGPREEFQKELEGIREDLKKIP-RLEQGMELLLERMDLLMRQRDLGNMEP 835

Query: 69   VESSEQETSTLK-PAEG---ESSVSKEIKNNTVERKADNDGENNDRNKFK--------KL 128
              ++E  T+    P E    E  +  E+    VE     DGEN D    +        K+
Sbjct: 836  PWAAEGTTADPPAPREDLHREGGIRAELCTRRVEMPVF-DGENPDGWSIRAERYFAMNKM 895

Query: 129  TDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLCGRFLRIR 188
            T+ EKL VA +S EG  L W+  ++ R     W+ LK  LL RFR  ++ SLC +FL +R
Sbjct: 896  TEREKLDVAVVSLEGEALAWFQWEDGRSPIRSWMVLKLMLLERFRPMQEGSLCEKFLSLR 955

Query: 189  QETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQM 237
            QET+V +YR  F+   AP++++ E+++E TF++GL P I+ E +  +P++L  +M+  Q 
Sbjct: 956  QETTVRDYRRQFEILAAPLTELSEQVLESTFVKGLKPEIRAEIRLMKPERLGRIMEVAQR 1015

[Close]

BLAST of CSPI05G18940 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-15
Identity = 78/259 (30.12%), Postives = 123/259 (47.49%), Query Frame = 1


Query: 1   MVQTRIEERLENHEQELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERV 60
           M Q R E R++  E+E+ +I     +L  M           EKT       +ET +    
Sbjct: 680 MAQKRNEGRVDCLEKEVGEIREEMQRLPRM-----------EKTS-----LEETQKAVAA 739

Query: 61  LASGKSVESSEQETSTL-------KPAEGESSVSKEIKNNTVERKADN-------DGENN 120
           L+ G++  ++ Q            +P+ G  +  +  +    E +           GEN 
Sbjct: 740 LSLGRNTTTAAQREDRAGWIPGVWEPSGGGMASDEMRRGGNGEWRGSRRVEMPVFTGENP 799

Query: 121 DRNKFKK--------LTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRF 180
           D   F+         LT+ EKL  A++S +G  L+WY   + R+ F  W NLK RLL RF
Sbjct: 800 DGWIFRADRYFATYGLTEEEKLVAAAMSLDGDALSWYQWTDSREVFGSWENLKRRLLLRF 859

Query: 181 RSSRQESLCGRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETK 238
           R +++ SLC +FL +RQ+ +V  Y   F+    P+  I E+++E TFM GLLP I+ E +
Sbjct: 860 RLTQEGSLCEQFLAVRQQGTVAAYWREFEILETPLKGISEEVMESTFMNGLLPEIRAEQR 919

[Close]

BLAST of CSPI05G18940 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-15
Identity = 76/242 (31.40%), Postives = 117/242 (48.35%), Query Frame = 1


Query: 1   MVQTRIEERLENHEQELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERV 60
           M Q  IE+RL   E E+  I     +L  + +N+       EK H M+ +  E  +++  
Sbjct: 1   MTQKMIEDRLTASEAEIEAIKQEVQRLPLLEKNL-------EKMHAMLSVIYEDRQRQTG 60

Query: 61  ------LASGKSVESSEQETSTLKPAEGESSVSKEIKNNTVERKADNDGENNDRNKFKKL 120
                 +++GK    +E+ T   +  EGE+S+S E +                R KF+KL
Sbjct: 61  GSKLTGISTGKRKVRNEEVTEE-EGEEGETSLSVETE------------AGQKRFKFRKL 120

Query: 121 TDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLCGRFLRIR 180
              E      +S EG  +NW+   E R  F  W  LKER+ +RFR     + C RFL I+
Sbjct: 121 ---EMPVFNVVSLEGRGMNWFRWAENRKWFRSWKELKERMYNRFRCRDYGTACARFLAIK 180

Query: 181 QETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQM 237
           QE SV EY   F++  AP+ ++ E+++E TF  GL P I+ E    R   L ++M+  Q+
Sbjct: 181 QEGSVSEYLQKFEELSAPLPEMAEEVLEGTFTNGLDPRIRKEVFAMRVVGLEDLMEAAQL 219

[Close]

BLAST of CSPI05G18940 vs. TrEMBL
Match: W9RUR8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016638 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 1


Query: 116  DSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLCGRFLRIRQ 175
            + EK+  AS+  EG  L W+   + +D FTDW +LK  +L RF  ++      R + +RQ
Sbjct: 925  EEEKVLAASVCMEGRALGWFQWLDSQDPFTDWRDLKAAILHRFSRAKDGDPTERLMALRQ 984

Query: 176  ETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQMV 235
            ++SV E+R+ F+  VAP+  I E I    F+ GL   ++VE K  RP  L E M   Q +
Sbjct: 985  DSSVMEFRDWFEALVAPMRGIPEPIFRGAFLNGLREDVRVEVKLHRPNNLQEAMDLAQQI 1044

Query: 236  E 237
            E
Sbjct: 1045 E 1045

[Close]

BLAST of CSPI05G18940 vs. TrEMBL
Match: A0A103XJ60_CYNCS (Ankyrin repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006438 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 1


Query: 114 LTDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLCGRFLRI 173
           +T  EKL  A +  EG  L WY   ++R  F  W  LK RLL+RF+SS++  L  +FL I
Sbjct: 192 VTTGEKLRAAVLGLEGQALAWYRWSDDRHPFHHWEGLKNRLLTRFQSSQEGDLYEQFLAI 251

Query: 174 RQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQ 233
           +QE S  EY   F+   A +  I EKI++ TF++GL P ++   +  +P  L + ++   
Sbjct: 252 KQEGSAREYVGKFETVSAQLRGIPEKIMQGTFLKGLKPELRTSVRLLQPMDLDQAIQLAL 311

Query: 234 MVE 237
           MV+
Sbjct: 312 MVD 314

[Close]

BLAST of CSPI05G18940 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-51
Identity = 125/271 (46.13%), Postives = 176/271 (64.94%), Query Frame = 1


Query: 1   MVQTRIEERLENHEQE-------LSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKE 60
           MVQTRIEER+E+ EQE       L+K+  +E  L  +++NM+ ++ Q EK  Q ++ + E
Sbjct: 1   MVQTRIEERMESFEQEVAGIKKELAKMPVIESTLIELTRNMEMMRLQSEKQQQAILSYME 60

Query: 61  TMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKN-NTVERKADNDGENNDRNKFK 120
              KER +A  +  ES  Q + T+K    ++S S++++  NT  +K + D  +NDR+KFK
Sbjct: 61  MNAKERSMAGERMNESDTQNSPTVKSKNDKASSSRDVEEINT--KKNEPDENSNDRSKFK 120

Query: 121 K--------------------------LTDSEKLTVASISFEGPTLNWYCSQEERDKFTD 180
           K                          LT+SEK+ V++I F+GP LNWY +QEER+KF  
Sbjct: 121 KVEMPVFTGEDPESWLFRAERYFQIHKLTESEKMLVSTICFDGPALNWYRAQEEREKFVS 180

Query: 181 WLNLKERLLSRFRSSRQESLCGRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFM 238
           W NLKERLL RF+S+R+ +  GRFLRI+QET+VEEYRNLFDK VAP+SD+ +++VEETFM
Sbjct: 181 WTNLKERLLIRFQSTREGTAFGRFLRIQQETTVEEYRNLFDKLVAPLSDVEDRVVEETFM 240

[Close]

BLAST of CSPI05G18940 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 4.8e-51
Identity = 127/276 (46.01%), Postives = 176/276 (63.77%), Query Frame = 1


Query: 1   MVQTRIEERLENHEQE-------LSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKE 60
           MVQTRIEERLE  +QE       LSK+  +E  L  +++++  ++ Q EK  Q++    E
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPVIEVSLNEIAKSVDLMRLQSEKQQQLLFTIIE 60

Query: 61  TMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKNNT------VERKADNDGENND 120
           T  KER + SG++ E + +E    K  E ++S S+ I+++        ER+ D+D    D
Sbjct: 61  TSSKERSMMSGQATEPTVKEFEKAKGKESDASSSRMIESDRNFRADGSERRNDSDDSFPD 120

Query: 121 RNKFKK--------------------------LTDSEKLTVASISFEGPTLNWYCSQEER 180
           RNKFKK                          LT+SEKL V+++SF+GP LNWY SQEER
Sbjct: 121 RNKFKKIEMPIFTGEDPDSWLFRAERYFQIHRLTESEKLLVSTVSFDGPALNWYRSQEER 180

Query: 181 DKFTDWLNLKERLLSRFRSSRQESLCGRFLRIRQETSVEEYRNLFDKWVAPISDILEKIV 238
           DKFT W N+KERLL RFRS++  +L G+FLRI+QE++VEEY NLFDK VAP++D+ E+++
Sbjct: 181 DKFTSWSNMKERLLVRFRSNKDGTLSGQFLRIKQESTVEEYINLFDKMVAPVNDLPERVI 240

[Close]

BLAST of CSPI05G18940 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 4.1e-50
Identity = 127/276 (46.01%), Postives = 173/276 (62.68%), Query Frame = 1


Query: 1   MVQTRIEERLENHEQE-------LSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKE 60
           MVQTRIEERLE  +QE       LSK+  +E  L+ ++++++ ++ Q EK  Q++    E
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPAIEMSLSEIAKSLELMRLQSEKQQQLLFTIIE 60

Query: 61  TMEKERVLASGKSVESSEQETSTLKPAEGESSVSKEIKN------NTVERKADNDGENND 120
           T  KER   S    ES  +E   +K  E ++S SK I +      +  +R+ D D   +D
Sbjct: 61  TNSKERSTMSRLETESPAKEFEKMKGKEDDASSSKAIDSGRNFGADRNDRRIDGDDGVSD 120

Query: 121 RNKFKK--------------------------LTDSEKLTVASISFEGPTLNWYCSQEER 180
           RNKFKK                          LTDSEK+ V++ISF+GP LNW+ SQEER
Sbjct: 121 RNKFKKIEMPVFTGEDPDSWLFRAERYFQIHKLTDSEKMLVSTISFDGPALNWFRSQEER 180

Query: 181 DKFTDWLNLKERLLSRFRSSRQESLCGRFLRIRQETSVEEYRNLFDKWVAPISDILEKIV 238
           DKFT W N+KERLL RFRS++  +L G+FLRI+QE +VEEY NLFDK VAP++D+ E+++
Sbjct: 181 DKFTSWSNMKERLLIRFRSNKDGTLSGQFLRIKQEGTVEEYINLFDKMVAPVNDLPERVI 240

[Close]

BLAST of CSPI05G18940 vs. NCBI nr
Match: gi|659118578|ref|XP_008459193.1| (PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 5.7e-28
Identity = 86/254 (33.86%), Postives = 146/254 (57.48%), Query Frame = 1


Query: 5   RIEERLENHEQELSKISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASG 64
           ++EER++  EQEL ++  +++ L  +++++K + AQ+ K  Q+++ + E + ++   A G
Sbjct: 4   KMEERMDLVEQELQRLPIIDENLPLLTKSIKEMNAQINKQQQVILKYIEGIIRDNSSA-G 63

Query: 65  KSVESSEQETSTLKPAEGESSVSKEIKNNTVERKADNDGENNDRNKFKKLTDS------- 124
           K+ E S   T +     G++ +S+ + ++    + + D    DR+KFKK+          
Sbjct: 64  KTTEGSTSHTKS-----GDTILSEVVDDSKTNTRHE-DINPMDRSKFKKVEMPVFNGTNP 123

Query: 125 --------------EKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQ 184
                         EKLTV  ISF+G  L+WY S +E + F +W +LK+R+L RFR+ + 
Sbjct: 124 DPWLFRADRFFKIHEKLTVVVISFDGSALDWYRSNDELEAFKNWDDLKQRILVRFRTIQD 183

Query: 185 ESLCGRFLRIRQETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQ 238
            +L G+F  I+QET+VEEYRN+FDK +AP++ +   ++EETFM G  PW+K E       
Sbjct: 184 GTLGGKFFSIKQETTVEEYRNIFDKLLAPLAFLQTMVLEETFMNGFSPWLKTEVDTLDTV 243

[Close]

BLAST of CSPI05G18940 vs. NCBI nr
Match: gi|703074097|ref|XP_010089730.1| (hypothetical protein L484_013924 [Morus notabilis])

HSP 1 Score: 97.1 bits (240), Expect = 4.5e-17
Identity = 73/242 (30.17%), Postives = 133/242 (54.96%), Query Frame = 1


Query: 9    RLENHEQELSK--ISTMEDKLTSMSQNMKNLQAQVEKTHQMVMIFKETMEKERVLASGKS 68
            R + HE+E ++      + +L  + +++K +  ++E+  ++++   + + ++R L + + 
Sbjct: 776  RTDGHEKEKTEGPREEFQKELEGIREDLKKIP-RLEQGMELLLERMDLLMRQRDLGNMEP 835

Query: 69   VESSEQETSTLK-PAEG---ESSVSKEIKNNTVERKADNDGENNDRNKFK--------KL 128
              ++E  T+    P E    E  +  E+    VE     DGEN D    +        K+
Sbjct: 836  PWAAEGTTADPPAPREDLHREGGIRAELCTRRVEMPVF-DGENPDGWSIRAERYFAMNKM 895

Query: 129  TDSEKLTVASISFEGPTLNWYCSQEERDKFTDWLNLKERLLSRFRSSRQESLCGRFLRIR 188
            T+ EKL VA +S EG  L W+  ++ R     W+ LK  LL RFR  ++ SLC +FL +R
Sbjct: 896  TEREKLDVAVVSLEGEALAWFQWEDGRSPIRSWMVLKLMLLERFRPMQEGSLCEKFLSLR 955

Query: 189  QETSVEEYRNLFDKWVAPISDILEKIVEETFMEGLLPWIKVETKFCRPQKLAEMMKYVQM 237
            QET+V +YR  F+   AP++++ E+++E TF++GL P I+ E +  +P++L  +M+  Q 
Sbjct: 956  QETTVRDYRRQFEILAAPLTELSEQVLESTFVKGLKPEIRAEIRLMKPERLGRIMEVAQR 1015

The following BLAST results are available for this feature:

BLAST of CSPI05G18940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G18940 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QTX5_9ROSA	3.2e-17	30.17	Uncharacterized protein OS=Morus notabilis GN=L484_013924 PE=4 SV=1	[more]
A5B2I6_VITVI	3.0e-15	30.12	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1	[more]
E5GC18_CUCME	3.9e-15	31.40	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
W9RUR8_9ROSA	1.5e-14	37.19	Uncharacterized protein OS=Morus notabilis GN=L484_016638 PE=4 SV=1	[more]
A0A103XJ60_CYNCS	3.3e-14	37.40	Ankyrin repeat-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_00...	[more]

BLAST of CSPI05G18940 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G18940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659134102\|ref\|XP_008467029.1\|	1.7e-51	46.13	PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo]	[more]
gi\|659119521\|ref\|XP_008459701.1\|	4.8e-51	46.01	PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo]	[more]
gi\|659109397\|ref\|XP_008454696.1\|	4.1e-50	46.01	PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo]	[more]
gi\|659118578\|ref\|XP_008459193.1\|	5.7e-28	33.86	PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo]	[more]
gi\|703074097\|ref\|XP_010089730.1\|	4.5e-17	30.17	hypothetical protein L484_013924 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G18940.1	CSPI05G18940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 122..209 score: 5.2
None	No IPR available	unknown	Coil	Coil	coord: 3..47 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G18940	Cucumber (Gy14) v1	cgycpiB296
CSPI05G18940	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G18940	Melon (DHL92) v3.5.1	cpimeB374
CSPI05G18940	Bottle gourd (USVL1VR-Ls)	cpilsiB339
CSPI05G18940	Melon (DHL92) v3.6.1	cpimedB366
CSPI05G18940	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G18940	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G18940	Cucumber (Chinese Long) v3	cpicucB294