CSPI05G18880 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G18880
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr5 : 20056507 .. 20057131 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGATGCTGATTTGAAGCGTAGAGATGTGGAATATGGGGTAGGAGATCTGGTTTTTCTTAAAATAAGGCCATATTGGCAAGTCCCATTACAAAAAAGAAGAAATGAGAAGTTATCAGCTATGTTCTTTGGTCCTTATAAGACCATAGAACGGATAGGCCTGGTTGCATACAAGTTAGAGTTACCAGAATCATCATCCATTCATCCTGTCTTCATGTTTTCCAGTTGAAGAAAATGTTGGAAAATCATCAAGCCGAGCCGTCTAATATGCTTTACATGACTGAGACCTATGAATGGTGGGTAGTACCTGATGAGATCTATGGCTACTTAAAGAATAAAACCGAGGGGTGGGATTTGTTGGTCGGCGGGAAAGGACTACCTATGCATGAGGCTACGTGGGAAGACTATGAAGAAATGAAGCGGCTGTCTCAAGAGTTTCACCTTGAGGACAAGGTGAATTTGGAGAAGGAATGTAATGATAGACCTCCTATCATTCACCAATATAGTAGAAGGAAGAAGAAGAAAGAGAGTGTTAGTGTTGGCACGTGTGAGTAGGTTGAGTGAGTTAGTTAGGATATGCGTTTTAAATTATTATAAATAGAGTTGTAATCTTGGAGGGAAGGGC

mRNA sequence

ATGTTGGAAAATCATCAAGCCGAGCCGTCTAATATGCTTTACATGACTGAGACCTATGAATGGTGGGTAGTACCTGATGAGATCTATGGCTACTTAAAGAATAAAACCGAGGGGTGGGATTTGTTGGTCGGCGGGAAAGGACTACCTATGCATGAGGCTACGTGGGAAGACTATGAAGAAATGAAGCGGCTGTCTCAAGAGTTTCACCTTGAGGACAAGGTGAATTTGGAGAAGGAATGTAATGATAGACCTCCTATCATTCACCAATATAGTAGAAGGAAGAAGAAGAAAGAGAGTGTTAGTGTTGGCACGTGTGAGTAG

Coding sequence (CDS)

ATGTTGGAAAATCATCAAGCCGAGCCGTCTAATATGCTTTACATGACTGAGACCTATGAATGGTGGGTAGTACCTGATGAGATCTATGGCTACTTAAAGAATAAAACCGAGGGGTGGGATTTGTTGGTCGGCGGGAAAGGACTACCTATGCATGAGGCTACGTGGGAAGACTATGAAGAAATGAAGCGGCTGTCTCAAGAGTTTCACCTTGAGGACAAGGTGAATTTGGAGAAGGAATGTAATGATAGACCTCCTATCATTCACCAATATAGTAGAAGGAAGAAGAAGAAAGAGAGTGTTAGTGTTGGCACGTGTGAGTAG

Homology

[Close]

BLAST of CSPI05G18880 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1


Query: 15   MTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKV 74
            +TE  EW V PD+                  KGLP  EA+WE  + +K    +FHLEDKV
Sbjct: 1964 LTEDLEWLVEPDQ------------------KGLPQFEASWESVDTIKEHFPDFHLEDKV 2023

Query: 75   NLEKECNDRPPIIHQYSRRKKK 97
            +L +  NDRPPI + Y+R+ K+
Sbjct: 2024 SLIEGGNDRPPIRYVYNRKGKR 2027

[Close]

BLAST of CSPI05G18880 vs. NCBI nr
Match: gi|659105263|ref|XP_008453052.1| (PREDICTED: uncharacterized protein LOC103493874 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 6.2e-14
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 14  YMTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDK 73
           ++ E  EW   PDE   Y KN T GW++L+G K LP HEA WE Y E++RL   FHLEDK
Sbjct: 230 FINENLEWQAYPDEALKYQKNNTGGWEVLIGWKDLPEHEALWECYNEIQRLYPTFHLEDK 289

Query: 74  VNLEKECNDRPPIIH 89
           + LE E N RPP I+
Sbjct: 290 MKLEGEGNVRPPPIN 304

[Close]

BLAST of CSPI05G18880 vs. NCBI nr
Match: gi|659072240|ref|XP_008464306.1| (PREDICTED: uncharacterized protein LOC103502220 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 7.5e-12
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 15  MTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKV 74
           + E + W   P E   Y +NK + W++++   GL  HEATWE Y ++      FHLEDK 
Sbjct: 147 LDENFVWTTHPVETLDYRQNKAKEWEVMIQWDGLSTHEATWEQYNDIADKYPNFHLEDKA 206

Query: 75  NLEKECNDRPPIIHQYSRRKKKK 98
           +LE   N RPPI+ QYSR+ K+K
Sbjct: 207 SLEWRSNVRPPILFQYSRKNKRK 229

[Close]

BLAST of CSPI05G18880 vs. NCBI nr
Match: gi|307135777|gb|ADN33669.1| (ty3-gypsy retroelement transposase [Cucumis melo subsp. melo])

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-07
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1


Query: 14  YMTETYEWWVVPDEIYGYLKN-KTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLED 73
           Y+TET+EW   P+E+YGY KN  T  W++L+  KGLP H      +      S   +LED
Sbjct: 615 YLTETHEWMTQPEEVYGYRKNPSTLDWEVLISWKGLP-HTKPLGKFVMTSSNSSLTNLED 674

Query: 74  KVNLEKECNDRPPIIHQY 91
           KV+L +E + +PP++  Y
Sbjct: 675 KVDLVEESSVKPPVLFTY 691

[Close]

BLAST of CSPI05G18880 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 9.5e-07
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 13   LYMTETYEWWVVPDEIYGYLKNKTEGW-DLLVGGKGLPMHEATWEDYEEMKRLSQEFHLE 72
            L +TE +E  + P+ + G   NK  G  + L+  +GL   +ATWE    M +    FHLE
Sbjct: 1051 LMLTENFELQLQPENVLGIRWNKELGANEWLIKWQGLQESDATWESVYRMNQQFPSFHLE 1110

Query: 73   DKVNLEKECNDRPPIIHQYSRRKKK 97
            DKVN+E     RPPI+H Y RR +K
Sbjct: 1111 DKVNVEPRGIVRPPILHIYKRRDRK 1135

[Close]

BLAST of CSPI05G18880 vs. NCBI nr
Match: gi|147854459|emb|CAN78588.1| (hypothetical protein VITISV_043911 [Vitis vinifera])

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-06
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1


Query: 15   MTETYEWWVVPDEIYGYLKNKTEGWDLLVGGKGLPMHEATWEDYEEMKRLSQEFHLEDKV 74
            +TE  EW V PD+                  KGLP  EA+WE  + +K    +FHLEDKV
Sbjct: 1964 LTEDLEWLVEPDQ------------------KGLPQFEASWESVDTIKEHFPDFHLEDKV 2023

Query: 75   NLEKECNDRPPIIHQYSRRKKK 97
            +L +  NDRPPI + Y+R+ K+
Sbjct: 2024 SLIEGGNDRPPIRYVYNRKGKR 2027

The following BLAST results are available for this feature:

BLAST of CSPI05G18880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G18880 vs. TrEMBL


Match Name	E-value	Identity	Description
A5B2I6_VITVI	3.3e-06	40.24	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1	[more]

BLAST of CSPI05G18880 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G18880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659105263\|ref\|XP_008453052.1\|	6.2e-14	53.33	PREDICTED: uncharacterized protein LOC103493874 [Cucumis melo]	[more]
gi\|659072240\|ref\|XP_008464306.1\|	7.5e-12	43.37	PREDICTED: uncharacterized protein LOC103502220 [Cucumis melo]	[more]
gi\|307135777\|gb\|ADN33669.1\|	7.3e-07	41.03	ty3-gypsy retroelement transposase [Cucumis melo subsp. melo]	[more]
gi\|659094491\|ref\|XP_008448087.1\|	9.5e-07	41.18	PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo]	[more]
gi\|147854459\|emb\|CAN78588.1\|	4.7e-06	40.24	hypothetical protein VITISV_043911 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016197	Chromo-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G18880.1	CSPI05G18880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016197	Chromo domain-like	unknown	SSF54160	Chromo domain-like	coord: 2..67 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G18880	Cucumber (Gy14) v1	cgycpiB296
CSPI05G18880	Cucurbita maxima (Rimu)	cmacpiB766
CSPI05G18880	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G18880	Melon (DHL92) v3.5.1	cpimeB374
CSPI05G18880	Watermelon (Charleston Gray)	cpiwcgB376
CSPI05G18880	Watermelon (97103) v1	cpiwmB447
CSPI05G18880	Cucurbita pepo (Zucchini)	cpecpiB458
CSPI05G18880	Bottle gourd (USVL1VR-Ls)	cpilsiB339
CSPI05G18880	Melon (DHL92) v3.6.1	cpimedB366
CSPI05G18880	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G18880	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G18880	Cucumber (Chinese Long) v3	cpicucB294
CSPI05G18880	Watermelon (97103) v2	cpiwmbB380