CSPI05G18620 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G18620
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 19663639 .. 19664538 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTGCGTTCACGAGAACACACTTTCCCAAGTATATCTTTCTACGCCTACCCTTAACCTAGATGCCTATATTACTTCTGATTATAAGGTCTGGTGGCTTGCAAAACACGGTGATTACCTCCAAGAAGGAGTGCACCATTTGATAGATCGTCTTACTCCCCTTCACATTAAATCCAAAAGCACAAAAAAAATTGAGAATAATTTTGGTAGTGGAAGTCAAACGATATGCTCTAAGAAAATTGAGGAACTGTTCGTGAAGAAAATTGAGGAACTGTTCGTGAAGAAAATTGAGGAAGGTAAAAAATGCTTGGTGGATAAATTGATCCTTTCTACACGATTTAAACTTTGTATTAGAGGTGGTACTGACAATATGGGTAAGGACAACCGCTTATTGATAACTGTGAAGCACCCTTTTGAACGTACCGAGGACAATCAAAACAACAATGATGATCGTCATTGGAAGAGACTTAAGAGGCCCAACAAACAATCAATTGATGATGAAGAGCCTCCTATTGAAGTCCTCGATGTCGCACAATTTTTTAACATCCCCTTCCCCATGGTTTCTTTTCGTCTTCCTTTTTTATTATTTATTTATTATGTTTCCTCTCCTTTACTCCCACTCTTATTTCTTGTTGTTACCATTATTTTGCAGTCCTCTTTAGGTGACCATGACCTACACATCGAAGGAACCTTAAAGTCGATGGTGAATCTAGACAGCTATAATGTTGTACTTACTTATAGTGAGAACAATAAGACACCTATAGGTGTAGCTATTAGGTTAGCTCGTTCTCTTGTGATTAAGCAGTCCCCTCAACAAGTGGAAGGAACGAAGCCTATTGCAGCTTCTGAGATTTCTCAATTTTGTGTCGGTAGCTTAATTTCTGACCTTCGACGATAG

mRNA sequence

ATGATTTGCGTTCACGAGAACACACTTTCCCAAGTATATCTTTCTACGCCTACCCTTAACCTAGATGCCTATATTACTTCTGATTATAAGGTCTGGTGGCTTGCAAAACACGGTGATTACCTCCAAGAAGGAGTGCACCATTTGATAGATCGTCTTACTCCCCTTCACATTAAATCCAAAAGCACAAAAAAAATTGAGAATAATTTTGGTAGTGGAAGTCAAACGATATGCTCTAAGAAAATTGAGGAACTGTTCGTGAAGAAAATTGAGGAACTGTTCGTGAAGAAAATTGAGGAAGGTAAAAAATGCTTGGTGGATAAATTGATCCTTTCTACACGATTTAAACTTTGTATTAGAGGTGGTACTGACAATATGGGTAAGGACAACCGCTTATTGATAACTGTGAAGCACCCTTTTGAACGTACCGAGGACAATCAAAACAACAATGATGATCGTCATTGGAAGAGACTTAAGAGGCCCAACAAACAATCAATTGATGATGAAGAGCCTCCTATTGAAGTCCTCGATGTCGCACAATTTTTTAACATCCCCTTCCCCATGTCCTCTTTAGGTGACCATGACCTACACATCGAAGGAACCTTAAAGTCGATGGTGAATCTAGACAGCTATAATGTTGTACTTACTTATAGTGAGAACAATAAGACACCTATAGGTGTAGCTATTAGGTTAGCTCGTTCTCTTGTGATTAAGCAGTCCCCTCAACAAGTGGAAGGAACGAAGCCTATTGCAGCTTCTGAGATTTCTCAATTTTGTGTCGGTAGCTTAATTTCTGACCTTCGACGATAG

Coding sequence (CDS)

ATGATTTGCGTTCACGAGAACACACTTTCCCAAGTATATCTTTCTACGCCTACCCTTAACCTAGATGCCTATATTACTTCTGATTATAAGGTCTGGTGGCTTGCAAAACACGGTGATTACCTCCAAGAAGGAGTGCACCATTTGATAGATCGTCTTACTCCCCTTCACATTAAATCCAAAAGCACAAAAAAAATTGAGAATAATTTTGGTAGTGGAAGTCAAACGATATGCTCTAAGAAAATTGAGGAACTGTTCGTGAAGAAAATTGAGGAACTGTTCGTGAAGAAAATTGAGGAAGGTAAAAAATGCTTGGTGGATAAATTGATCCTTTCTACACGATTTAAACTTTGTATTAGAGGTGGTACTGACAATATGGGTAAGGACAACCGCTTATTGATAACTGTGAAGCACCCTTTTGAACGTACCGAGGACAATCAAAACAACAATGATGATCGTCATTGGAAGAGACTTAAGAGGCCCAACAAACAATCAATTGATGATGAAGAGCCTCCTATTGAAGTCCTCGATGTCGCACAATTTTTTAACATCCCCTTCCCCATGTCCTCTTTAGGTGACCATGACCTACACATCGAAGGAACCTTAAAGTCGATGGTGAATCTAGACAGCTATAATGTTGTACTTACTTATAGTGAGAACAATAAGACACCTATAGGTGTAGCTATTAGGTTAGCTCGTTCTCTTGTGATTAAGCAGTCCCCTCAACAAGTGGAAGGAACGAAGCCTATTGCAGCTTCTGAGATTTCTCAATTTTGTGTCGGTAGCTTAATTTCTGACCTTCGACGATAG
Homology
[Close]
BLAST of CSPI05G18620 vs. NCBI nr
Match: gi|778665095|ref|XP_011648484.1| (PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 1.5e-64
Identity = 136/219 (62.10%), Postives = 159/219 (72.60%), Query Frame = 1 

Query: 24  YITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENNFGSGSQTICSKKIEE 83
           ++TS YKVWWLAKHGDYLQEGV HLIDR TP HIKSK+TKKIE+NFGSG Q ICS + +E
Sbjct: 362 HVTSHYKVWWLAKHGDYLQEGVQHLIDRPTPPHIKSKTTKKIEHNFGSGIQKICSDETDE 421

Query: 84  LFVKKIEELFVKKIEEGKKCLVDKLILSTRFKLCIRGGTDNMGKDNRLLITVKHPFERTE 143
             V+KIE         G K LVD L LSTRFK  I+GG DN+GKDNRL I  K P +R E
Sbjct: 422 RLVEKIEG--------GTKRLVDNLSLSTRFKHLIKGGIDNVGKDNRLSIAAKRPSKRIE 481

Query: 144 DNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMSSLGDHDLHIEGTLKS 203
           +NQ++NDDRHWKR K+PNKQSIDDEE PI               SSLGD+DLHI+GTL++
Sbjct: 482 NNQSSNDDRHWKRPKKPNKQSIDDEESPIR--------------SSLGDYDLHIKGTLET 541

Query: 204 MVNLDSYNVVLTYSENNKTPIGVAIRLARSLVIKQSPQQ 243
           M NL+  NVVL+Y+EN+K PIG  I  AR LVIK  PQ+
Sbjct: 542 MSNLEDCNVVLSYNENSKKPIGANIVSARPLVIKGPPQK 558

[Close]
BLAST of CSPI05G18620 vs. NCBI nr
Match: gi|659133689|ref|XP_008466860.1| (PREDICTED: uncharacterized protein LOC103504169 [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 6.2e-55
Identity = 127/216 (58.80%), Postives = 146/216 (67.59%), Query Frame = 1 

Query: 9   LSQVYLSTPTLNLDAYITSDYKVWWLAKHGDYLQEGVHHLIDRLTPLHIKSKSTKKIENN 68
           LSQVYL+ PTL+   +ITS YK WWLAKHGDYLQEG+ +LIDR TP  IKSK+TKKIE+N
Sbjct: 2   LSQVYLTAPTLHSCNHITSYYKAWWLAKHGDYLQEGLQNLIDRPTPPLIKSKTTKKIEHN 61

Query: 69  FGSGSQTICSKKIEELFVKKIEELFVKKIEEGKKCLVDKLILSTRFKLCIRGGTDNMGKD 128
                + IC  K EEL         V+K+ EG K LV     S +FK   R G DN+ KD
Sbjct: 62  ---PDKKICFSKTEEL---------VEKVREGTKYLVTTSTPSAQFKFAARSGADNVRKD 121

Query: 129 NRLLITVKHPFERTEDNQNNNDDRHWKRLKRPNKQSIDDEEPPIEVLDVAQFFNIPFPMS 188
              L T K P   TED  NNNDDRHWKR KR +KQSIDDE+PPIEVLDVAQFF+I  PMS
Sbjct: 122 LHKLTTEKLPSTHTEDIHNNNDDRHWKRPKRSDKQSIDDEKPPIEVLDVAQFFDITSPMS 181

Query: 189 SLGDHDLHIEGTLKSMVNLDSYNVVLTYSENNKTPI 225
           SLGDH L IEGT K M + +     L+ SEN+KTPI
Sbjct: 182 SLGDHTLQIEGTSKPMASPED----LSASENSKTPI 201

The following BLAST results are available for this feature:
BLAST of CSPI05G18620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G18620 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI05G18620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G18620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665095|ref|XP_011648484.1|1.5e-6462.10PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus][more]
gi|659133689|ref|XP_008466860.1|6.2e-5558.80PREDICTED: uncharacterized protein LOC103504169 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G18620.1CSPI05G18620.1mRNA