CSPI05G18600 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G18600
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 19663060 .. 19663281 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGCAGACAGAATCTGCCATACTTTCTGGCATAATTTCCAAGAACAACATGGAGCTGAAGCGGAAGCAACATGAGATTTTAAAGACTTGCGGGGATATTGACAAACTCAAATGTGCCTCAATGGTTAGAGATGTTGATTCTAAAATGCTATTAGCGCTTCGTGAATCTTTAGAAAGCACACTAGAGGAGCTAAAGAACCTTAAATGGACTCCATGA

mRNA sequence

ATGGTGGTGCAGACAGAATCTGCCATACTTTCTGGCATAATTTCCAAGAACAACATGGAGCTGAAGCGGAAGCAACATGAGATTTTAAAGACTTGCGGGGATATTGACAAACTCAAATGTGCCTCAATGGTTAGAGATGTTGATTCTAAAATGCTATTAGCGCTTCGTGAATCTTTAGAAAGCACACTAGAGGAGCTAAAGAACCTTAAATGGACTCCATGA

Coding sequence (CDS)

ATGGTGGTGCAGACAGAATCTGCCATACTTTCTGGCATAATTTCCAAGAACAACATGGAGCTGAAGCGGAAGCAACATGAGATTTTAAAGACTTGCGGGGATATTGACAAACTCAAATGTGCCTCAATGGTTAGAGATGTTGATTCTAAAATGCTATTAGCGCTTCGTGAATCTTTAGAAAGCACACTAGAGGAGCTAAAGAACCTTAAATGGACTCCATGA
Homology
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BLAST of CSPI05G18600 vs. NCBI nr
Match: gi|778665095|ref|XP_011648484.1| (PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 

Query: 10  LSGIISKNNMELKRKQHEILKTCGDIDKLKCASMVRDVDSKMLLALRESLESTLEELKNL 69
           LS   +K   +LK KQHEI KTC +IDKL+CAS+V D+D+KML  LRESLESTLEELKN 
Sbjct: 639 LSAKEAKLEAKLKMKQHEISKTCEEIDKLECASIVGDIDAKMLSTLRESLESTLEELKNF 698

Query: 70  KWTP 74
           KWTP
Sbjct: 699 KWTP 702

The following BLAST results are available for this feature:
BLAST of CSPI05G18600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G18600 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI05G18600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G18600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665095|ref|XP_011648484.1|1.1e-1468.75PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G18600.1CSPI05G18600.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 49..72
scor