CSPI05G18550 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G18550
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 19570794 .. 19571330 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATTAGGTAAAAGAGATTAGTTGGTGTGTGTATAAAACCAAAAGGTTAGAGAATTATTAAGAATACAATTTAGAGAGAGGGAATAGTTGGGTTAAAAGAAGGCAAAAAGAAAAAAGGAATGGCTCAAAGAGTTGCATCATGCAGATCGTCATCAGGGCTGCTTCAACTATTTGCATTCCTATTCATTTTCTTTCTCCTCGTCACTGTTCCAGGTACCAAAACCAAAAGATAAGGAACAAGTAATTTGATATTATATATTTGAGTATCATTTTAATAATTATGATGATTACTGATTAGGTTGTTGGGGTGCAACAAAGTTTGTAAGACAGAAATGTAGAAGGGTGGAGAATTGGGTTTCTGCAAACAAGAACAGGAAGGGGAGAATCACCCACGGATCCATGCATGGAGATTACGAAGATACCATCAATATGTCCCCTATACACCACAATTAAAACTACATCTCTCTCTCTCTCTCTTAATCCCTTTTCTCTTTTCTTAAACACTACAAATCAATTTAATATTTTTCTAAATTTAC

mRNA sequence

ATGGCTCAAAGAGTTGCATCATGCAGATCGTCATCAGGGCTGCTTCAACTATTTGCATTCCTATTCATTTTCTTTCTCCTCGTCACTGTTCCAGGTTGTTGGGGTGCAACAAAGTTTGTAAGACAGAAATGTAGAAGGGTGGAGAATTGGGTTTCTGCAAACAAGAACAGGAAGGGGAGAATCACCCACGGATCCATGCATGGAGATTACGAAGATACCATCAATATGTCCCCTATACACCACAATTAA

Coding sequence (CDS)

ATGGCTCAAAGAGTTGCATCATGCAGATCGTCATCAGGGCTGCTTCAACTATTTGCATTCCTATTCATTTTCTTTCTCCTCGTCACTGTTCCAGGTTGTTGGGGTGCAACAAAGTTTGTAAGACAGAAATGTAGAAGGGTGGAGAATTGGGTTTCTGCAAACAAGAACAGGAAGGGGAGAATCACCCACGGATCCATGCATGGAGATTACGAAGATACCATCAATATGTCCCCTATACACCACAATTAA
Homology
[Close]
BLAST of CSPI05G18550 vs. TrEMBL
Match: A0A0A0KP61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G526880 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-40
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MAQRVASCRSSSGLLQLFAFLFIFFLLVTVPGCWGATKFVRQKCRRVENWVSANKNRKGR 60
          MAQRVASCRSSSGLLQLFAFLFIFFLL+TVPGCWGATKFVRQKCRRVENWVSANKNRKGR
Sbjct: 1  MAQRVASCRSSSGLLQLFAFLFIFFLLLTVPGCWGATKFVRQKCRRVENWVSANKNRKGR 60

Query: 61 ITHGSMHGDYEDTINMSPIHHN 83
          ITHGSMHGDYEDTINMSPIHHN
Sbjct: 61 ITHGSMHGDYEDTINMSPIHHN 82

[Close]
BLAST of CSPI05G18550 vs. NCBI nr
Match: gi|700196221|gb|KGN51398.1| (hypothetical protein Csa_5G526880 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 3.9e-40
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MAQRVASCRSSSGLLQLFAFLFIFFLLVTVPGCWGATKFVRQKCRRVENWVSANKNRKGR 60
          MAQRVASCRSSSGLLQLFAFLFIFFLL+TVPGCWGATKFVRQKCRRVENWVSANKNRKGR
Sbjct: 1  MAQRVASCRSSSGLLQLFAFLFIFFLLLTVPGCWGATKFVRQKCRRVENWVSANKNRKGR 60

Query: 61 ITHGSMHGDYEDTINMSPIHHN 83
          ITHGSMHGDYEDTINMSPIHHN
Sbjct: 61 ITHGSMHGDYEDTINMSPIHHN 82

The following BLAST results are available for this feature:
BLAST of CSPI05G18550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G18550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KP61_CUCSA2.7e-4098.78Uncharacterized protein OS=Cucumis sativus GN=Csa_5G526880 PE=4 SV=1[more]
BLAST of CSPI05G18550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G18550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196221|gb|KGN51398.1|3.9e-4098.78hypothetical protein Csa_5G526880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G18550.1CSPI05G18550.1mRNA