CSPI05G18350 (gene) Wild cucumber (PI 183967)

NameCSPI05G18350
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCACTA en-spm transposon protein
LocationChr5 : 19404243 .. 19404913 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACAAGTTCAATGACGCAAGAGGCACGTCATCAGTGGGCGACACGTTAGGTTAGACATTGTTACATAATCAATTAATTGCATAAACTTGGAGTTCTATTTCTGATATCATTATGTTTTTATAGATGGCTCTCAACCTACTGCTCGCACTCCTAGAAGACGAGAGCACTTGAGGAACTTGAAGTTGGATAGATACGTGCAGCGAAATGGGAAGATCCCCATATCCATCGCTCCAGGAAAAGATAAACCGATCTCCCCACATGCCATTCTCTTCAGTTGTACCATTAGCGAGTTAACGCGAGATACTTTTCCAAGTTACGCTCTTAAGTGGACTGGCACTACTCCGGAGTACATCAAGCTTGTGAAGGAAAGTTTACAGGTAAGTTTTTAAATTACCCGTACACATATGTTACCTATGTATATATATATAATCCTAATCTGTGTGTAATTTTATTTTGTAGCAATGGTTTATGTTGGATGTCACAGATCCAACACTTACTCGGTTTGTTGAGCATTAAATGCTTACCACCTGGAAGGAGTTCAAGGGGCAGAACCACCGTCATTTTAAGAAGTTCAGTGATCCTGAACAAGCACGTGCCAACCCACCCTCCAGATTGAAGAATCGTGTGGAAGATTGGCACTTCCTCTGCGATCTCTACCTTACTTGA

mRNA sequence

ATGTCAACAAGTTCAATGACGCAAGAGGCACGTCATCAGTGGGCGACACATGGCTCTCAACCTACTGCTCGCACTCCTAGAAGACGAGAGCACTTGAGGAACTTGAAGTTGGATAGATACGTGCAGCGAAATGGGAAGATCCCCATATCCATCGCTCCAGGAAAAGATAAACCGATCTCCCCACATGCCATTCTCTTCAGTTGTACCATTAGCGAGTTAACGCGAGATACTTTTCCAAGTTACGCTCTTAAGTGGACTGGCACTACTCCGGAGTACATCAAGCTTGTGAAGGAAAGTTTACAGGAGTTCAAGGGGCAGAACCACCGTCATTTTAAGAAGTTCAGTGATCCTGAACAAGCACGTGCCAACCCACCCTCCAGATTGAAGAATCGTGTGGAAGATTGGCACTTCCTCTGCGATCTCTACCTTACTTGA

Coding sequence (CDS)

ATGTCAACAAGTTCAATGACGCAAGAGGCACGTCATCAGTGGGCGACACATGGCTCTCAACCTACTGCTCGCACTCCTAGAAGACGAGAGCACTTGAGGAACTTGAAGTTGGATAGATACGTGCAGCGAAATGGGAAGATCCCCATATCCATCGCTCCAGGAAAAGATAAACCGATCTCCCCACATGCCATTCTCTTCAGTTGTACCATTAGCGAGTTAACGCGAGATACTTTTCCAAGTTACGCTCTTAAGTGGACTGGCACTACTCCGGAGTACATCAAGCTTGTGAAGGAAAGTTTACAGGAGTTCAAGGGGCAGAACCACCGTCATTTTAAGAAGTTCAGTGATCCTGAACAAGCACGTGCCAACCCACCCTCCAGATTGAAGAATCGTGTGGAAGATTGGCACTTCCTCTGCGATCTCTACCTTACTTGA
BLAST of CSPI05G18350 vs. TrEMBL
Match: E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 71/150 (47.33%), Postives = 86/150 (57.33%), Query Frame = 1

Query: 19  SQPTARTPRRREHLRNLKLDRYVQRNGKIPISIAPGKDKPISPHAILFSCTISELTRDTF 78
           SQ    TPRRR   R L+L+R+V  NG IP++IAPG +KPISP+A+ FS  I    R TF
Sbjct: 32  SQQATPTPRRRAQSRLLELERHVAINGCIPMTIAPGAEKPISPYAVHFSQAIGVCVRKTF 91

Query: 79  PSYALKWTGTTPEYIKLVKESLQ-------------------------EFKGQNHRHFKK 138
           P   LKW     EYI++VK  LQ                         EF+   HRHFKK
Sbjct: 92  PVRCLKWVDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKK 151

Query: 139 FSDPEQARANPPSRLKNRVEDWHFLCDLYL 144
           +SDPE+ARANPP+ L  R EDWHFL D Y+
Sbjct: 152 YSDPEEARANPPNALVGRDEDWHFLYDHYI 181

BLAST of CSPI05G18350 vs. NCBI nr
Match: gi|307136235|gb|ADN34071.1| (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26
Identity = 71/150 (47.33%), Postives = 86/150 (57.33%), Query Frame = 1

Query: 19  SQPTARTPRRREHLRNLKLDRYVQRNGKIPISIAPGKDKPISPHAILFSCTISELTRDTF 78
           SQ    TPRRR   R L+L+R+V  NG IP++IAPG +KPISP+A+ FS  I    R TF
Sbjct: 32  SQQATPTPRRRAQSRLLELERHVAINGCIPMTIAPGAEKPISPYAVHFSQAIGVCVRKTF 91

Query: 79  PSYALKWTGTTPEYIKLVKESLQ-------------------------EFKGQNHRHFKK 138
           P   LKW     EYI++VK  LQ                         EF+   HRHFKK
Sbjct: 92  PVRCLKWVDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKK 151

Query: 139 FSDPEQARANPPSRLKNRVEDWHFLCDLYL 144
           +SDPE+ARANPP+ L  R EDWHFL D Y+
Sbjct: 152 YSDPEEARANPPNALVGRDEDWHFLYDHYI 181

BLAST of CSPI05G18350 vs. NCBI nr
Match: gi|778665376|ref|XP_011648549.1| (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 5.2e-16
Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 1

Query: 25  TPRRREHLRNLKLDRYVQRNGKIPISIAPGKDKPISPHAILFSCTISELTRDTFPSYALK 84
           T RRR+H RNL+L+RY+ +NGKI ISI    DKPISPH I FSCTI  LTRDTFP   LK
Sbjct: 727 TLRRRQHSRNLELERYILQNGKILISIPLEGDKPISPHPIRFSCTIDVLTRDTFPIQILK 786

Query: 85  WTGTTPEYIKLVKE 99
           W     EYI++VK+
Sbjct: 787 WVDVPQEYIEVVKQ 800

BLAST of CSPI05G18350 vs. NCBI nr
Match: gi|659093680|ref|XP_008447658.1| (PREDICTED: uncharacterized protein LOC103490067 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 1

Query: 18  GSQPTARTPRRREHLRNLKLDRYVQRNGKIPISIAPGKDKPISPHAILFSCTISELTRDT 77
           GS PT +T   R+H RN++L++Y+ ++GKIPISI  G +K IS H +LFS TIS   RD 
Sbjct: 60  GSGPTRKT---RDHSRNMELEKYICKHGKIPISITLGAEKSISSHVVLFSNTISVAIRDA 119

Query: 78  FPSYALKWTGTTPEYIKLVKESLQEF 104
           FP + L++     +YIK+VK+ + +F
Sbjct: 120 FPIWLLRFADVPSKYIKIVKKFMSKF 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
E5GC72_CUCME1.0e-2647.33CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|307136235|gb|ADN34071.1|1.5e-2647.33CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
gi|778665376|ref|XP_011648549.1|5.2e-1662.16PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus][more]
gi|659093680|ref|XP_008447658.1|1.6e-1246.51PREDICTED: uncharacterized protein LOC103490067 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G18350.1CSPI05G18350.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G18350Wax gourdcpiwgoB433
CSPI05G18350Wax gourdcpiwgoB474
CSPI05G18350Wild cucumber (PI 183967)cpicpiB032
CSPI05G18350Wild cucumber (PI 183967)cpicpiB037
CSPI05G18350Wild cucumber (PI 183967)cpicpiB118
CSPI05G18350Cucumber (Gy14) v1cgycpiB296
CSPI05G18350Cucumber (Gy14) v1cgycpiB317
CSPI05G18350Cucumber (Gy14) v1cgycpiB506
CSPI05G18350Cucurbita maxima (Rimu)cmacpiB134
CSPI05G18350Cucurbita maxima (Rimu)cmacpiB269
CSPI05G18350Cucurbita maxima (Rimu)cmacpiB305
CSPI05G18350Cucurbita maxima (Rimu)cmacpiB732
CSPI05G18350Cucurbita moschata (Rifu)cmocpiB123
CSPI05G18350Cucurbita moschata (Rifu)cmocpiB255
CSPI05G18350Cucurbita moschata (Rifu)cmocpiB297
CSPI05G18350Cucurbita moschata (Rifu)cmocpiB724
CSPI05G18350Cucumber (Chinese Long) v2cpicuB217
CSPI05G18350Cucumber (Chinese Long) v2cpicuB228
CSPI05G18350Cucumber (Chinese Long) v2cpicuB239
CSPI05G18350Melon (DHL92) v3.5.1cpimeB350
CSPI05G18350Melon (DHL92) v3.5.1cpimeB393
CSPI05G18350Watermelon (Charleston Gray)cpiwcgB355
CSPI05G18350Watermelon (Charleston Gray)cpiwcgB362
CSPI05G18350Watermelon (Charleston Gray)cpiwcgB396
CSPI05G18350Watermelon (Charleston Gray)cpiwcgB418
CSPI05G18350Watermelon (97103) v1cpiwmB369
CSPI05G18350Watermelon (97103) v1cpiwmB375
CSPI05G18350Cucurbita pepo (Zucchini)cpecpiB178
CSPI05G18350Cucurbita pepo (Zucchini)cpecpiB416
CSPI05G18350Cucurbita pepo (Zucchini)cpecpiB626
CSPI05G18350Cucurbita pepo (Zucchini)cpecpiB683
CSPI05G18350Bottle gourd (USVL1VR-Ls)cpilsiB351
CSPI05G18350Bottle gourd (USVL1VR-Ls)cpilsiB358
CSPI05G18350Bottle gourd (USVL1VR-Ls)cpilsiB388
CSPI05G18350Melon (DHL92) v3.6.1cpimedB340
CSPI05G18350Melon (DHL92) v3.6.1cpimedB388
CSPI05G18350Cucumber (Gy14) v2cgybcpiB033
CSPI05G18350Cucumber (Gy14) v2cgybcpiB133
CSPI05G18350Cucumber (Gy14) v2cgybcpiB225
CSPI05G18350Silver-seed gourdcarcpiB0298
CSPI05G18350Silver-seed gourdcarcpiB0403
CSPI05G18350Silver-seed gourdcarcpiB0474
CSPI05G18350Silver-seed gourdcarcpiB0721
CSPI05G18350Cucumber (Chinese Long) v3cpicucB271
CSPI05G18350Cucumber (Chinese Long) v3cpicucB284
CSPI05G18350Watermelon (97103) v2cpiwmbB366
CSPI05G18350Watermelon (97103) v2cpiwmbB428