CSPI05G17020 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G17020
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 18326451 .. 18327076 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGCCTAAATTGGCAGAAGAACTAAATAACGAAACCATAATTAACCACACCCTCTCAACGTCAATTTCACCGGTCATCCAATCCATCACAGCCCATGGCGATTCTCTTCAACAAGTTTTCGACGATCCCAGCTGCGCTGTTGATCCATTTTATTATGTGCTCAACTTTTAGCACCATGTTCGCCGCCACCAACGAGCAACTCCTCAACGTCGCTAACGCAAAGAACAGCATCACGGCATCAGCTGCAGAGTATCAAGCATTCGATATTGGAAAGCCGCTTTACAGGATTAAAGAACAATACCATGTTCCGGACCTAGTGGTTGAGAATATTGATTCCATTTCCTCTGCACCATCATCTGCCCCGTCCCCATCTCCATCACCGTCACGGTCGCCATTGGGCTGAGGAATTTGAACCATTCAATTGTTCAATCACTCAAGCTAAGAACAATTGTTTTTCTTTGTTGATCTATTTACAAATTAAATGACGTGTTTAATTGTGTGATTTAAAATTTGATTTCATTTTGCAAAATCTATAATTATGGTTTTGAACATTCAAGTCGTTAACGTGCATTGTTGTAATATACATGGAAAAATTTATAGAATTAACCTACTTTAATTTTCAC

mRNA sequence

ATGGCGATTCTCTTCAACAAGTTTTCGACGATCCCAGCTGCGCTGTTGATCCATTTTATTATGTGCTCAACTTTTAGCACCATGTTCGCCGCCACCAACGAGCAACTCCTCAACGTCGCTAACGCAAAGAACAGCATCACGGCATCAGCTGCAGAGTATCAAGCATTCGATATTGGAAAGCCGCTTTACAGGATTAAAGAACAATACCATGTTCCGGACCTAGTGGTTGAGAATATTGATTCCATTTCCTCTGCACCATCATCTGCCCCGTCCCCATCTCCATCACCGTCACGGTCGCCATTGGGCTGA

Coding sequence (CDS)

ATGGCGATTCTCTTCAACAAGTTTTCGACGATCCCAGCTGCGCTGTTGATCCATTTTATTATGTGCTCAACTTTTAGCACCATGTTCGCCGCCACCAACGAGCAACTCCTCAACGTCGCTAACGCAAAGAACAGCATCACGGCATCAGCTGCAGAGTATCAAGCATTCGATATTGGAAAGCCGCTTTACAGGATTAAAGAACAATACCATGTTCCGGACCTAGTGGTTGAGAATATTGATTCCATTTCCTCTGCACCATCATCTGCCCCGTCCCCATCTCCATCACCGTCACGGTCGCCATTGGGCTGA
Homology
[Close]
BLAST of CSPI05G17020 vs. TrEMBL
Match: A0A0A0KNL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G497040 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-44
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 1 

Query: 1   MAILFNKFSTIPAALLIHFIMCSTFSTMFAATNEQLLNVANAKNSITASAAEYQAFDIGK 60
           MAILFNKFSTIPAALLIHFI+CS FSTMFAATNEQLLNVANAKN ITASAAEYQAFDIGK
Sbjct: 1   MAILFNKFSTIPAALLIHFILCSIFSTMFAATNEQLLNVANAKNGITASAAEYQAFDIGK 60

Query: 61  PLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG 103
           PLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG
Sbjct: 61  PLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG 102

[Close]
BLAST of CSPI05G17020 vs. NCBI nr
Match: gi|700196063|gb|KGN51240.1| (hypothetical protein Csa_5G497040 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 1.9e-44
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 1 

Query: 1   MAILFNKFSTIPAALLIHFIMCSTFSTMFAATNEQLLNVANAKNSITASAAEYQAFDIGK 60
           MAILFNKFSTIPAALLIHFI+CS FSTMFAATNEQLLNVANAKN ITASAAEYQAFDIGK
Sbjct: 1   MAILFNKFSTIPAALLIHFILCSIFSTMFAATNEQLLNVANAKNGITASAAEYQAFDIGK 60

Query: 61  PLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG 103
           PLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG
Sbjct: 61  PLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG 102

The following BLAST results are available for this feature:
BLAST of CSPI05G17020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G17020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNL8_CUCSA1.3e-4497.06Uncharacterized protein OS=Cucumis sativus GN=Csa_5G497040 PE=4 SV=1[more]
BLAST of CSPI05G17020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G17020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196063|gb|KGN51240.1|1.9e-4497.06hypothetical protein Csa_5G497040 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G17020.1CSPI05G17020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G17020Cla004718Watermelon (97103) v1cpiwmB369
CSPI05G17020Csa5G497040Cucumber (Chinese Long) v2cpicuB239
CSPI05G17020MELO3C025496Melon (DHL92) v3.5.1cpimeB350
CSPI05G17020ClCG09G020380Watermelon (Charleston Gray)cpiwcgB355
CSPI05G17020MELO3C025496.2Melon (DHL92) v3.6.1cpimedB340
CSPI05G17020Cla97C09G181770Watermelon (97103) v2cpiwmbB428
CSPI05G17020Bhi06G000589Wax gourdcpiwgoB466
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G17020Melon (DHL92) v3.6.1cpimedB357
CSPI05G17020Cucumber (Gy14) v2cgybcpiB180
CSPI05G17020Cucumber (Gy14) v2cgybcpiB225
CSPI05G17020Silver-seed gourdcarcpiB0298
CSPI05G17020Silver-seed gourdcarcpiB0721
CSPI05G17020Cucumber (Chinese Long) v3cpicucB284
CSPI05G17020Cucumber (Chinese Long) v3cpicucB293
CSPI05G17020Watermelon (97103) v2cpiwmbB370
CSPI05G17020Wild cucumber (PI 183967)cpicpiB175
CSPI05G17020Cucumber (Gy14) v1cgycpiB056
CSPI05G17020Cucumber (Gy14) v1cgycpiB259
CSPI05G17020Cucumber (Gy14) v1cgycpiB415
CSPI05G17020Cucurbita maxima (Rimu)cmacpiB305
CSPI05G17020Cucurbita maxima (Rimu)cmacpiB732
CSPI05G17020Cucurbita maxima (Rimu)cmacpiB763
CSPI05G17020Cucurbita moschata (Rifu)cmocpiB297
CSPI05G17020Cucurbita moschata (Rifu)cmocpiB756
CSPI05G17020Cucurbita moschata (Rifu)cmocpiB724
CSPI05G17020Cucurbita moschata (Rifu)cmocpiB755
CSPI05G17020Cucurbita moschata (Rifu)cmocpiB870
CSPI05G17020Cucumber (Chinese Long) v2cpicuB246
CSPI05G17020Melon (DHL92) v3.5.1cpimeB365
CSPI05G17020Watermelon (Charleston Gray)cpiwcgB364
CSPI05G17020Watermelon (97103) v1cpiwmB377
CSPI05G17020Watermelon (97103) v1cpiwmB436
CSPI05G17020Cucurbita pepo (Zucchini)cpecpiB178
CSPI05G17020Cucurbita pepo (Zucchini)cpecpiB416
CSPI05G17020Cucurbita pepo (Zucchini)cpecpiB445
CSPI05G17020Cucurbita pepo (Zucchini)cpecpiB450
CSPI05G17020Bottle gourd (USVL1VR-Ls)cpilsiB344
CSPI05G17020Bottle gourd (USVL1VR-Ls)cpilsiB351
CSPI05G17020Bottle gourd (USVL1VR-Ls)cpilsiB370