CSPI05G16680 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G16680
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTy1-copia retrotransposon protein
LocationChr5 : 17979393 .. 17980153 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTGCCGCCCGGTAGGTCAGATAGGTGATTCGGGTTTCCGCGCTTGTGTGATAAACAGGTAATTTTTGTTACCTAAATCTGTTCATTTTCAAAAGAATAATTTGGTAATTAATTATTTTTCTTTCTCATTATGGACATTTGGGCTCGTCAGTTCACTCATTTAACCCTTCACATTCGACCTTTAGTTGGCCCTTCTCCTCCTATATAATGAGCTCATCCTCATATTCTCTACACACTGAAAAACTATCTCCCATCTCCACCATCTCTGATTTTTGTTTTCTATACTGTTATGAGTATCTTTGTTTTGTTTCTATTCTTTATTCCAATGAGTGCACATATGAGTAGGGGAGCTATTTTAACATTGGGGAGCAACCGACAACACGATTGGCACCTCAATGGGCTGTGATTGCATTCAGGGCAGTGGTTTGTCACAACACAACAATCTATTTAGTTCAACATTCTAATCTTAAGTTCCAACAATCTGAAAACAATTATAATAATGTCGATAAAAATTCCAACAAGGTTCTTCTGAATTTGTCCAAGCTCGAATTGCTTGATAGAATGAAATATCATCGATGGTCCAAGAAAGTTCTAAACTTTTTCCAGCAGGTGGAAGTTGACTATGTTCTTATCACTGATCCACCATCTGATCCAGCAGGAACCATTTCAACACCTTCTTCTGATCTAGAATCATCCACAAGTCCTCCTATCGTTGACCAATTGAAGCAAGTGTCTATAGTCGATCTTGAGAAATAA

mRNA sequence

ATGTTGTTGCCGCCCGGTAGGTCAGATAGGGCAGTGGTTTGTCACAACACAACAATCTATTTAGTTCAACATTCTAATCTTAAGTTCCAACAATCTGAAAACAATTATAATAATGTCGATAAAAATTCCAACAAGGTTCTTCTGAATTTGTCCAAGCTCGAATTGCTTGATAGAATGAAATATCATCGATGGTCCAAGAAAGTTCTAAACTTTTTCCAGCAGGTGGAAGTTGACTATGTTCTTATCACTGATCCACCATCTGATCCAGCAGGAACCATTTCAACACCTTCTTCTGATCTAGAATCATCCACAAGTCCTCCTATCGTTGACCAATTGAAGCAAGTGTCTATAGTCGATCTTGAGAAATAA

Coding sequence (CDS)

ATGTTGTTGCCGCCCGGTAGGTCAGATAGGGCAGTGGTTTGTCACAACACAACAATCTATTTAGTTCAACATTCTAATCTTAAGTTCCAACAATCTGAAAACAATTATAATAATGTCGATAAAAATTCCAACAAGGTTCTTCTGAATTTGTCCAAGCTCGAATTGCTTGATAGAATGAAATATCATCGATGGTCCAAGAAAGTTCTAAACTTTTTCCAGCAGGTGGAAGTTGACTATGTTCTTATCACTGATCCACCATCTGATCCAGCAGGAACCATTTCAACACCTTCTTCTGATCTAGAATCATCCACAAGTCCTCCTATCGTTGACCAATTGAAGCAAGTGTCTATAGTCGATCTTGAGAAATAA
Homology
[Close]
BLAST of CSPI05G16680 vs. TrEMBL
Match: E5GBG5_CUCME (Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.5e-13
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1 

Query: 41  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSD 100
           K SNK+L +LSKLE LD   Y RWS+K+L FF+Q+EVDYVL TD P SDP  T ST SSD
Sbjct: 4   KTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFKQLEVDYVLTTDLPTSDPPTTTST-SSD 63

Query: 101 LESSTSP----PIVDQLKQVSIVDLEK 123
            ESST P     + DQ+K+  ++D EK
Sbjct: 64  PESSTGPLTAVAVTDQVKKDQVIDPEK 89

[Close]
BLAST of CSPI05G16680 vs. NCBI nr
Match: gi|659102488|ref|XP_008452160.1| (PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-13
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 1 

Query: 41  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITDPPSDPAGTISTPSSDL 100
           K SNK+L +LSKLE LD   Y RWS+K+L FF+Q++VDYVL TD PS    T ++ SSD 
Sbjct: 4   KTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLQVDYVLTTDLPSSDPPTTTSTSSDP 63

Query: 101 ESSTSPP----IVDQLKQVSIVDLEK 123
           ESST PP    + DQ+K+  ++D EK
Sbjct: 64  ESSTGPPTTVAVTDQVKKDQVIDPEK 89

[Close]
BLAST of CSPI05G16680 vs. NCBI nr
Match: gi|307135946|gb|ADN33807.1| (ty1-copia retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 82.0 bits (201), Expect = 7.8e-13
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1 

Query: 41  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSD 100
           K SNK+L +LSKLE LD   Y RWS+K+L FF+Q+EVDYVL TD P SDP  T ST SSD
Sbjct: 4   KTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFKQLEVDYVLTTDLPTSDPPTTTST-SSD 63

Query: 101 LESSTSP----PIVDQLKQVSIVDLEK 123
            ESST P     + DQ+K+  ++D EK
Sbjct: 64  PESSTGPLTAVAVTDQVKKDQVIDPEK 89

[Close]
BLAST of CSPI05G16680 vs. NCBI nr
Match: gi|659090008|ref|XP_008445782.1| (PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 49/87 (56.32%), Postives = 60/87 (68.97%), Query Frame = 1 

Query: 41  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITD-PPSDPAGTISTPSSD 100
           K SNK+L +LSKLE LD   Y RWS+K+L FF+Q+EVDYVL TD P SDP  T ST SSD
Sbjct: 4   KTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTST-SSD 63

Query: 101 LESSTSP----PIVDQLKQVSIVDLEK 123
            ESST P     + +Q+K   ++D EK
Sbjct: 64  PESSTGPLTAVAVTEQVKMDQVIDPEK 89

[Close]
BLAST of CSPI05G16680 vs. NCBI nr
Match: gi|659126166|ref|XP_008463045.1| (PREDICTED: uncharacterized protein LOC103501285 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 1 

Query: 41  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITDPPS-DPAGTISTPSSD 100
           K SNK+L +LSKLE LD   Y RWS+K+L FF+Q+EVDYVL TD P+ DP  T ST SSD
Sbjct: 4   KTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTST-SSD 63

Query: 101 LESSTSP----PIVDQLKQVSIVDLEK 123
            ESST P     + DQ+K+  ++D EK
Sbjct: 64  PESSTGPLTTVAVTDQVKKDQVIDPEK 89

[Close]
BLAST of CSPI05G16680 vs. NCBI nr
Match: gi|659113205|ref|XP_008456453.1| (PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 1 

Query: 41  KNSNKVLLNLSKLELLDRMKYHRWSKKVLNFFQQVEVDYVLITDPPSDPAGTISTPSSDL 100
           K SNK+L +LSKLE LD   Y RWS+K+L FF+Q+EVDYVL TD PS    T ++ SS+ 
Sbjct: 4   KTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTSSNP 63

Query: 101 ESSTSP----PIVDQLKQVSIVDLEK 123
           ESST P     + DQ+K+  ++D EK
Sbjct: 64  ESSTGPLTTVAVTDQVKKDQVIDPEK 89

The following BLAST results are available for this feature:
BLAST of CSPI05G16680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G16680 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBG5_CUCME5.5e-1357.47Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CSPI05G16680 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G16680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102488|ref|XP_008452160.1|2.1e-1353.49PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo][more]
gi|307135946|gb|ADN33807.1|7.8e-1357.47ty1-copia retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659090008|ref|XP_008445782.1|1.3e-1256.32PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo][more]
gi|659126166|ref|XP_008463045.1|2.3e-1256.32PREDICTED: uncharacterized protein LOC103501285 [Cucumis melo][more]
gi|659113205|ref|XP_008456453.1|3.0e-1252.33PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G16680.1CSPI05G16680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G16680Cucumber (Chinese Long) v2cpicuB239
CSPI05G16680Melon (DHL92) v3.5.1cpimeB350
CSPI05G16680Watermelon (Charleston Gray)cpiwcgB355
CSPI05G16680Watermelon (97103) v1cpiwmB369
CSPI05G16680Cucurbita pepo (Zucchini)cpecpiB115
CSPI05G16680Cucurbita pepo (Zucchini)cpecpiB445
CSPI05G16680Cucurbita pepo (Zucchini)cpecpiB836
CSPI05G16680Bottle gourd (USVL1VR-Ls)cpilsiB351
CSPI05G16680Melon (DHL92) v3.6.1cpimedB340
CSPI05G16680Cucumber (Gy14) v2cgybcpiB225
CSPI05G16680Silver-seed gourdcarcpiB1100
CSPI05G16680Cucumber (Chinese Long) v3cpicucB284
CSPI05G16680Watermelon (97103) v2cpiwmbB428
CSPI05G16680Wax gourdcpiwgoB466
CSPI05G16680Cucumber (Gy14) v1cgycpiB415
CSPI05G16680Cucurbita maxima (Rimu)cmacpiB192
CSPI05G16680Cucurbita maxima (Rimu)cmacpiB763
CSPI05G16680Cucurbita maxima (Rimu)cmacpiB813
CSPI05G16680Cucurbita moschata (Rifu)cmocpiB175
CSPI05G16680Cucurbita moschata (Rifu)cmocpiB798