CSPI05G15610 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G15610
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Copia protein
Location	Chr5 : 16614516 .. 16615101 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGATGGGAGAACTTAGTTTCTTCCTTGGTCTTCAAATCAAACAACTCAAGGATGGCATCTTCATAAGTCAAGAAAAATACACAAGGGATTTGCTCAAGAAATTCAAATTAAATGAAGGTAAAGTTGCAAAAACTCCTATGAGCACTACCACTAAGCTTGACAAAGATGAAAAAGGTAAGTGTGTGGATATAAAGACTTATCGAGGTATGATCGGATCTTTACTTTATTTGACCGCTAGTAGACCCGATATCATGTTTAGTGTATGTCTTTGTGCTAGATTTCAATCTTGTCCTAAAGAATCACATTTCCATGCCGTTAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGGTATCCTAGAAATGTTGAGTTTAATTTGGTATGATATTCCGATACGGATTTTGCCGGTAGTTTACTTGACCGTAAAAGTACTAGTGGGACTTGCCAATTTCTTGGTAGTCCTTTGGTATCTTGGTTTAGTAAAAAGCAAAATTTGGTTGCGTTATCCACTACCGAAGCAGAATATATTGCGGTTGCTAGTTGTTGTGCACAAATTCTTTGGATGA

mRNA sequence

ATGAGTATGATGGGAGAACTTAGTTTCTTCCTTGGTCTTCAAATCAAACAACTCAAGGATGGCATCTTCATAAGTCAAGAAAAATACACAAGGGATTTGCTCAAGAAATTCAAATTAAATGAAGGTAAAGTTGCAAAAACTCCTATGAGCACTACCACTAAGCTTGACAAAGATGAAAAAGATTTCAATCTTGTCCTAAAGAATCACATTTCCATGCCGTTAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGGTATCCTAGAAATGTTGAGTTTAATTTGGTATGATATTCCGATACGGATTTTGCCGGTAGTTTACTTGACCGTAAAAGTACTAGTGGGACTTGCCAATTTCTTGGTAGTCCTTTGGTATCTTGGTTTAGTAAAAAGCAAAATTTGGTTGCGTTATCCACTACCGAAGCAGAATATATTGCGGTTGCTAGTTGTTGTGCACAAATTCTTTGGATGA

Coding sequence (CDS)

ATGAGTATGATGGGAGAACTTAGTTTCTTCCTTGGTCTTCAAATCAAACAACTCAAGGATGGCATCTTCATAAGTCAAGAAAAATACACAAGGGATTTGCTCAAGAAATTCAAATTAAATGAAGGTAAAGTTGCAAAAACTCCTATGAGCACTACCACTAAGCTTGACAAAGATGAAAAAGATTTCAATCTTGTCCTAAAGAATCACATTTCCATGCCGTTAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGGTATCCTAGAAATGTTGAGTTTAATTTGGTATGATATTCCGATACGGATTTTGCCGGTAGTTTACTTGACCGTAAAAGTACTAGTGGGACTTGCCAATTTCTTGGTAGTCCTTTGGTATCTTGGTTTAGTAAAAAGCAAAATTTGGTTGCGTTATCCACTACCGAAGCAGAATATATTGCGGTTGCTAGTTGTTGTGCACAAATTCTTTGGATGA

Homology

[Close]

BLAST of CSPI05G15610 vs. TrEMBL
Match: A5AFY0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030941 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSMMGEL+FFLGLQIKQLK+G FI+Q KY RDLLK+F + E K  KTPMS++ KLDKDEK
Sbjct: 665 MSMMGELNFFLGLQIKQLKEGTFINQAKYIRDLLKRFNMEEAKTMKTPMSSSIKLDKDEK 724

[Close]

BLAST of CSPI05G15610 vs. TrEMBL
Match: A5AWG2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017765 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
          MSMMGEL+FFLGLQIKQLK+G FI+QEKY RDLLK+F + + K  KTPMS+  KLDKDEK
Sbjct: 34 MSMMGELNFFLGLQIKQLKEGTFINQEKYIRDLLKRFNMEKAKTMKTPMSSPIKLDKDEK 93

[Close]

BLAST of CSPI05G15610 vs. TrEMBL
Match: A5AMA4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036606 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.5e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
          MSMMGEL+FFLGLQIKQLK+G FI+QEKY RDL K+F + E K  KTPMS++ KLDKDEK
Sbjct: 1  MSMMGELNFFLGLQIKQLKEGTFINQEKYIRDLPKRFNMEEAKTMKTPMSSSIKLDKDEK 60

[Close]

BLAST of CSPI05G15610 vs. TrEMBL
Match: A5B241_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000889 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.6e-15
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSMMGEL+FFLGLQIKQLK+G FI+Q KY RDLLK+F + E K  KTPM+++ KLD DEK
Sbjct: 114 MSMMGELNFFLGLQIKQLKEGTFINQAKYIRDLLKRFNMEEAKTMKTPMTSSIKLDMDEK 173

Query: 61  D 62
           D
Sbjct: 174 D 174

[Close]

BLAST of CSPI05G15610 vs. TrEMBL
Match: A5BJL6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017211 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.6e-15
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSMMGEL+FF+GLQIKQLK+G FI+Q KY RDLLK+F + E K  KTPMS++ KLDKDEK
Sbjct: 704 MSMMGELNFFIGLQIKQLKEGTFINQAKYIRDLLKRFNMXEAKTMKTPMSSSIKLDKDEK 763

[Close]

BLAST of CSPI05G15610 vs. NCBI nr
Match: gi|147787878|emb|CAN67228.1| (hypothetical protein VITISV_017765 [Vitis vinifera])

HSP 1 Score: 89.7 bits (221), Expect = 4.9e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
          MSMMGEL+FFLGLQIKQLK+G FI+QEKY RDLLK+F + + K  KTPMS+  KLDKDEK
Sbjct: 34 MSMMGELNFFLGLQIKQLKEGTFINQEKYIRDLLKRFNMEKAKTMKTPMSSPIKLDKDEK 93

[Close]

BLAST of CSPI05G15610 vs. NCBI nr
Match: gi|147765887|emb|CAN64520.1| (hypothetical protein VITISV_030941 [Vitis vinifera])

HSP 1 Score: 89.7 bits (221), Expect = 4.9e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSMMGEL+FFLGLQIKQLK+G FI+Q KY RDLLK+F + E K  KTPMS++ KLDKDEK
Sbjct: 665 MSMMGELNFFLGLQIKQLKEGTFINQAKYIRDLLKRFNMEEAKTMKTPMSSSIKLDKDEK 724

[Close]

BLAST of CSPI05G15610 vs. NCBI nr
Match: gi|147810082|emb|CAN69205.1| (hypothetical protein VITISV_036606 [Vitis vinifera])

HSP 1 Score: 89.4 bits (220), Expect = 6.4e-15
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1  MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
          MSMMGEL+FFLGLQIKQLK+G FI+QEKY RDL K+F + E K  KTPMS++ KLDKDEK
Sbjct: 1  MSMMGELNFFLGLQIKQLKEGTFINQEKYIRDLPKRFNMEEAKTMKTPMSSSIKLDKDEK 60

[Close]

BLAST of CSPI05G15610 vs. NCBI nr
Match: gi|147778450|emb|CAN67988.1| (hypothetical protein VITISV_017211 [Vitis vinifera])

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSMMGEL+FF+GLQIKQLK+G FI+Q KY RDLLK+F + E K  KTPMS++ KLDKDEK
Sbjct: 704 MSMMGELNFFIGLQIKQLKEGTFINQAKYIRDLLKRFNMXEAKTMKTPMSSSIKLDKDEK 763

[Close]

BLAST of CSPI05G15610 vs. NCBI nr
Match: gi|147854594|emb|CAN80699.1| (hypothetical protein VITISV_000889 [Vitis vinifera])

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 1   MSMMGELSFFLGLQIKQLKDGIFISQEKYTRDLLKKFKLNEGKVAKTPMSTTTKLDKDEK 60
           MSMMGEL+FFLGLQIKQLK+G FI+Q KY RDLLK+F + E K  KTPM+++ KLD DEK
Sbjct: 114 MSMMGELNFFLGLQIKQLKEGTFINQAKYIRDLLKRFNMEEAKTMKTPMTSSIKLDMDEK 173

Query: 61  D 62
           D
Sbjct: 174 D 174

The following BLAST results are available for this feature:

BLAST of CSPI05G15610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G15610 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AFY0_VITVI	3.4e-15	73.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030941 PE=4 SV=1	[more]
A5AWG2_VITVI	3.4e-15	73.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017765 PE=4 SV=1	[more]
A5AMA4_VITVI	4.5e-15	73.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036606 PE=4 SV=1	[more]
A5B241_VITVI	7.6e-15	70.49	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000889 PE=4 SV=1	[more]
A5BJL6_VITVI	7.6e-15	71.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017211 PE=4 SV=1	[more]

BLAST of CSPI05G15610 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G15610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147787878\|emb\|CAN67228.1\|	4.9e-15	73.33	hypothetical protein VITISV_017765 [Vitis vinifera]	[more]
gi\|147765887\|emb\|CAN64520.1\|	4.9e-15	73.33	hypothetical protein VITISV_030941 [Vitis vinifera]	[more]
gi\|147810082\|emb\|CAN69205.1\|	6.4e-15	73.33	hypothetical protein VITISV_036606 [Vitis vinifera]	[more]
gi\|147778450\|emb\|CAN67988.1\|	1.1e-14	71.67	hypothetical protein VITISV_017211 [Vitis vinifera]	[more]
gi\|147854594\|emb\|CAN80699.1\|	1.1e-14	70.49	hypothetical protein VITISV_000889 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G15610.1	CSPI05G15610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..50 score: 1.0
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..61 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G15610	Melon (DHL92) v3.6.1	cpimedB343
CSPI05G15610	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G15610	Silver-seed gourd	carcpiB0515
CSPI05G15610	Silver-seed gourd	carcpiB0863
CSPI05G15610	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G15610	Watermelon (97103) v2	cpiwmbB351
CSPI05G15610	Wax gourd	cpiwgoB457
CSPI05G15610	Cucurbita maxima (Rimu)	cmacpiB308
CSPI05G15610	Cucurbita maxima (Rimu)	cmacpiB735
CSPI05G15610	Cucurbita moschata (Rifu)	cmocpiB300
CSPI05G15610	Cucurbita moschata (Rifu)	cmocpiB728
CSPI05G15610	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G15610	Melon (DHL92) v3.5.1	cpimeB353
CSPI05G15610	Watermelon (Charleston Gray)	cpiwcgB381
CSPI05G15610	Watermelon (97103) v1	cpiwmB418
CSPI05G15610	Cucurbita pepo (Zucchini)	cpecpiB181
CSPI05G15610	Cucurbita pepo (Zucchini)	cpecpiB420
CSPI05G15610	Bottle gourd (USVL1VR-Ls)	cpilsiB324