CSPI05G14910 (gene) Wild cucumber (PI 183967)

NameCSPI05G14910
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionNuclear transcription factor Y subunit C-1
LocationChr5 : 15638579 .. 15638791 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGACCGATATCTTTGATTTCTTAGTTGACATTGTTCCTAGGGATGAGATCAAGGATGAGGCTAGGATGGGCGGTATGGTTGGAGCTACTGTTAGTGGAGTTCCCTACTATTATCCGCCTATAGGTCAACCTGTGGGGGCTCCCGGGGGAATGATGATTGGAAGACCGACAATGGATCCCACTGGAGTTTACGCTCAGCCGTCGTCCTAG

mRNA sequence

ATGAGGACCGATATCTTTGATTTCTTAGTTGACATTGTTCCTAGGGATGAGATCAAGGATGAGGCTAGGATGGGCGGTATGGTTGGAGCTACTGTTAGTGGAGTTCCCTACTATTATCCGCCTATAGGTCAACCTGTGGGGGCTCCCGGGGGAATGATGATTGGAAGACCGACAATGGATCCCACTGGAGTTTACGCTCAGCCGTCGTCCTAG

Coding sequence (CDS)

ATGAGGACCGATATCTTTGATTTCTTAGTTGACATTGTTCCTAGGGATGAGATCAAGGATGAGGCTAGGATGGGCGGTATGGTTGGAGCTACTGTTAGTGGAGTTCCCTACTATTATCCGCCTATAGGTCAACCTGTGGGGGCTCCCGGGGGAATGATGATTGGAAGACCGACAATGGATCCCACTGGAGTTTACGCTCAGCCGTCGTCCTAG
BLAST of CSPI05G14910 vs. Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.6e-24
Identity = 58/72 (80.56%), Postives = 60/72 (83.33%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARM--GGMVGA-TVSGVPYYYPPIGQPVGAPGGMMIGRPT 61
           RTDIFDFLVDIVPRDEIKDEA +  GGMV A T SGVPYYYPP+GQP G PGGMMIGRP 
Sbjct: 130 RTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAG-PGGMMIGRPA 189

Query: 62  MDPTGVYAQPSS 71
           MDP GVY QP S
Sbjct: 190 MDPNGVYVQPPS 200

BLAST of CSPI05G14910 vs. Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-22
Identity = 53/75 (70.67%), Postives = 57/75 (76.00%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARM------GGMVGATVSGVPYYYPPIGQPVGAPGGMMIG 61
           RTDIFDFLVDIVPR+EIK+E         GGMV    SGVPYYYPP+GQP   PGGMMIG
Sbjct: 143 RTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQPA-VPGGMMIG 202

Query: 62  RPTMDPTGVYAQPSS 71
           RP MDP+GVYAQP S
Sbjct: 203 RPAMDPSGVYAQPPS 216

BLAST of CSPI05G14910 vs. Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-09
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARMG-GMVGATVSGVPY-YYPPIGQPVGAPGGMMIGRPTM 61
           RTDIFDFLVDIVPR++++DE   G G   AT +G PY Y PP   P+G P GM++G P  
Sbjct: 135 RTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGA 194

Query: 62  DPTGVY 66
            P   Y
Sbjct: 195 YPPNPY 199

BLAST of CSPI05G14910 vs. Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-07
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEA----RMGGMVGATVSGVPYYYPPIG-QPVGAPGGMMIGR 58
           RTDIFDFLVDIVPR++++DE       G +  A  +G PY Y P G  P+G P GM++G 
Sbjct: 145 RTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAAGYPYGYLPAGTAPIGNP-GMVMGN 204

BLAST of CSPI05G14910 vs. TrEMBL
Match: A0A0A0LNK7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001515 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.1e-29
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDP 61
           RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GAPGGMMIGRP MDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 62  TGVYAQPSS 71
           TGVYAQP S
Sbjct: 181 TGVYAQPPS 189

BLAST of CSPI05G14910 vs. TrEMBL
Match: A0A067JFC2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26442 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.5e-27
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGA-PGGMMIGRPTMD 61
           RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GA PGGMMIGRP +D
Sbjct: 128 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPTGAGPGGMMIGRPAVD 187

Query: 62  PTGVYAQPSS 71
           PTGVY QP S
Sbjct: 188 PTGVYVQPPS 197

BLAST of CSPI05G14910 vs. TrEMBL
Match: A0A067DWE4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0269011mg PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-25
Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEAR-MGGMVGATVSGVPYYYPPIGQPVG--APGGMMIGRPT 61
           RTDIFDFLVDIVPRDEIKDEA  +GGMVGAT SGVPYYYPP+GQP G   PGGMMIGRP 
Sbjct: 101 RTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPA 160

Query: 62  MDPTGVYAQPSS 71
           +DPTGVY QP S
Sbjct: 161 VDPTGVYVQPPS 172

BLAST of CSPI05G14910 vs. TrEMBL
Match: A0A067E8S6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0269011mg PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-25
Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEAR-MGGMVGATVSGVPYYYPPIGQPVG--APGGMMIGRPT 61
           RTDIFDFLVDIVPRDEIKDEA  +GGMVGAT SGVPYYYPP+GQP G   PGGMMIGRP 
Sbjct: 126 RTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPA 185

Query: 62  MDPTGVYAQPSS 71
           +DPTGVY QP S
Sbjct: 186 VDPTGVYVQPPS 197

BLAST of CSPI05G14910 vs. TrEMBL
Match: V4TJW4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032646mg PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-25
Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEAR-MGGMVGATVSGVPYYYPPIGQPVG--APGGMMIGRPT 61
           RTDIFDFLVDIVPRDEIKDEA  +GGMVGAT SGVPYYYPP+GQP G   PGGMMIGRP 
Sbjct: 126 RTDIFDFLVDIVPRDEIKDEAAGLGGMVGATASGVPYYYPPMGQPTGTAGPGGMMIGRPA 185

Query: 62  MDPTGVYAQPSS 71
           +DPTGVY QP S
Sbjct: 186 VDPTGVYVQPPS 197

BLAST of CSPI05G14910 vs. TAIR10
Match: AT3G48590.1 (AT3G48590.1 nuclear factor Y, subunit C1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-25
Identity = 58/72 (80.56%), Postives = 60/72 (83.33%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARM--GGMVGA-TVSGVPYYYPPIGQPVGAPGGMMIGRPT 61
           RTDIFDFLVDIVPRDEIKDEA +  GGMV A T SGVPYYYPP+GQP G PGGMMIGRP 
Sbjct: 130 RTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAG-PGGMMIGRPA 189

Query: 62  MDPTGVYAQPSS 71
           MDP GVY QP S
Sbjct: 190 MDPNGVYVQPPS 200

BLAST of CSPI05G14910 vs. TAIR10
Match: AT5G63470.1 (AT5G63470.1 nuclear factor Y, subunit C4)

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-23
Identity = 53/75 (70.67%), Postives = 57/75 (76.00%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARM------GGMVGATVSGVPYYYPPIGQPVGAPGGMMIG 61
           RTDIFDFLVDIVPR+EIK+E         GGMV    SGVPYYYPP+GQP   PGGMMIG
Sbjct: 143 RTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQPA-VPGGMMIG 202

Query: 62  RPTMDPTGVYAQPSS 71
           RP MDP+GVYAQP S
Sbjct: 203 RPAMDPSGVYAQPPS 216

BLAST of CSPI05G14910 vs. TAIR10
Match: AT1G54830.2 (AT1G54830.2 nuclear factor Y, subunit C3)

HSP 1 Score: 63.5 bits (153), Expect = 5.9e-11
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARMG-GMVGATVSGVPY-YYPPIGQPVGAPGGMMIGRPTM 61
           RTDIFDFLVDIVPR++++DE   G G   AT +G PY Y PP   P+G P GM++G P  
Sbjct: 135 RTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGA 194

Query: 62  DPTGVY 66
            P   Y
Sbjct: 195 YPPNPY 199

BLAST of CSPI05G14910 vs. TAIR10
Match: AT1G08970.4 (AT1G08970.4 nuclear factor Y, subunit C9)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-08
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEA----RMGGMVGATVSGVPYYYPPIG-QPVGAPGGMMIGR 58
           RTDIFDFLVDIVPR++++DE       G +  A  +G PY Y P G  P+G P GM++G 
Sbjct: 145 RTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAAGYPYGYLPAGTAPIGNP-GMVMGN 204

BLAST of CSPI05G14910 vs. TAIR10
Match: AT1G56170.1 (AT1G56170.1 nuclear factor Y, subunit C2)

HSP 1 Score: 49.7 bits (117), Expect = 8.8e-07
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEAR--MGGMVGATVSGVPYYY 40
           RTD+FDFLVDI+PRDE+K+E      G + + V   PYYY
Sbjct: 141 RTDVFDFLVDIIPRDELKEEGLGVTKGTIPSVVGSPPYYY 180

BLAST of CSPI05G14910 vs. NCBI nr
Match: gi|449440548|ref|XP_004138046.1| (PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 5.9e-29
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDP 61
           RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GAPGGMMIGRP MDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 62  TGVYAQPSS 71
           TGVYAQP S
Sbjct: 181 TGVYAQPPS 189

BLAST of CSPI05G14910 vs. NCBI nr
Match: gi|659128902|ref|XP_008464428.1| (PREDICTED: nuclear transcription factor Y subunit C-1 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 5.9e-29
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDP 61
           RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GAPGGMMIGRP MDP
Sbjct: 121 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDP 180

Query: 62  TGVYAQPSS 71
           TGVYAQP S
Sbjct: 181 TGVYAQPPS 189

BLAST of CSPI05G14910 vs. NCBI nr
Match: gi|764576951|ref|XP_011463262.1| (PREDICTED: nuclear transcription factor Y subunit C-1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 131.0 bits (328), Expect = 8.5e-28
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARMGG--MVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTM 61
           RTDIFDFLVDIVPRDEIKDEA +GG  MVGAT SGVPYYYPPIGQP GAPGGMMIGRP M
Sbjct: 135 RTDIFDFLVDIVPRDEIKDEAGLGGVAMVGATASGVPYYYPPIGQPAGAPGGMMIGRPAM 194

Query: 62  DPTGVYAQPSS 71
           DPTGVYAQP S
Sbjct: 195 DPTGVYAQPPS 205

BLAST of CSPI05G14910 vs. NCBI nr
Match: gi|1009130162|ref|XP_015882147.1| (PREDICTED: nuclear transcription factor Y subunit C-1 [Ziziphus jujuba])

HSP 1 Score: 128.6 bits (322), Expect = 4.2e-27
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGAPGGMMIGRPTMDP 61
           RTDIFDFLVDIVPRDEIKDEA +GG+VGAT SGVP+YYPP+GQP G PGGMMIGRP +DP
Sbjct: 139 RTDIFDFLVDIVPRDEIKDEAGLGGIVGATASGVPFYYPPMGQPAGGPGGMMIGRPAVDP 198

Query: 62  TGVYAQPSS 71
           TGVYAQP S
Sbjct: 199 TGVYAQPPS 207

BLAST of CSPI05G14910 vs. NCBI nr
Match: gi|802771281|ref|XP_012090689.1| (PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-26
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 1

Query: 2   RTDIFDFLVDIVPRDEIKDEARMGGMVGATVSGVPYYYPPIGQPVGA-PGGMMIGRPTMD 61
           RTDIFDFLVDIVPRDEIKDEA +GGMVGAT SGVPYYYPP+GQP GA PGGMMIGRP +D
Sbjct: 128 RTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPTGAGPGGMMIGRPAVD 187

Query: 62  PTGVYAQPSS 71
           PTGVY QP S
Sbjct: 188 PTGVYVQPPS 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NFYC1_ARATH2.6e-2480.56Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1... [more]
NFYC4_ARATH1.8e-2270.67Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2... [more]
NFYC3_ARATH1.0e-0953.03Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2... [more]
NFYC9_ARATH2.8e-0750.82Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2... [more]
Match NameE-valueIdentityDescription
A0A0A0LNK7_CUCSA4.1e-2989.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001515 PE=4 SV=1[more]
A0A067JFC2_JATCU8.5e-2785.71Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26442 PE=4 SV=1[more]
A0A067DWE4_CITSI6.1e-2581.94Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0269011mg PE=4 SV=1[more]
A0A067E8S6_CITSI6.1e-2581.94Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0269011mg PE=4 SV=1[more]
V4TJW4_9ROSI6.1e-2581.94Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032646mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G48590.11.4e-2580.56 nuclear factor Y, subunit C1[more]
AT5G63470.11.0e-2370.67 nuclear factor Y, subunit C4[more]
AT1G54830.25.9e-1153.03 nuclear factor Y, subunit C3[more]
AT1G08970.41.6e-0850.82 nuclear factor Y, subunit C9[more]
AT1G56170.18.8e-0755.00 nuclear factor Y, subunit C2[more]
Match NameE-valueIdentityDescription
gi|449440548|ref|XP_004138046.1|5.9e-2989.86PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis sativus][more]
gi|659128902|ref|XP_008464428.1|5.9e-2989.86PREDICTED: nuclear transcription factor Y subunit C-1 [Cucumis melo][more]
gi|764576951|ref|XP_011463262.1|8.5e-2888.73PREDICTED: nuclear transcription factor Y subunit C-1 [Fragaria vesca subsp. ves... [more]
gi|1009130162|ref|XP_015882147.1|4.2e-2784.06PREDICTED: nuclear transcription factor Y subunit C-1 [Ziziphus jujuba][more]
gi|802771281|ref|XP_012090689.1|1.2e-2685.71PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curca... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016602 CCAAT-binding factor complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G14910.1CSPI05G14910.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10252HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATEDcoord: 2..70
score: 2.8
NoneNo IPR availablePANTHERPTHR10252:SF39NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-1-RELATEDcoord: 2..70
score: 2.8

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None