CSPI05G13250 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G13250
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTransposase
LocationChr5 : 12812006 .. 12814030 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGAAATTTTAAACTTATTAATATTTTTTTTATGGTGAACATTGTAATTATGTTAAGGTACTTATCATGGTAGGTTGATCTGAGATTGGAATGGAAAATGATGAAGTTTCAGATAACTTGAGGTGGATTGCCCATAGCCCTCATCATTTTGTCATTAAGTATAACAGTTGTGCCATTAATGGATGTCACTATCACACGAAGTCTCATGATCATAATCGAAATGTACAAAATAGTGGAGTTAGTTTAGTGGCGAAAACAATGCAAGTGTCCAGTTCAAAAGAAAAAAACTCCATCATTGGAGATATGTCCTTTTATGGAGTGATTTAAGACATATGGGAACTTAATTATAATGCGTTCAATGTTGCAGTGTTTTAGATGCGATTGGGTTGAGAACAATAGTGATATGAAGATTGATAACCTTGGTTTTCTGTTAGTTGATTTAAAAAGAATAGGTCACAAGTCTGATTCGTTTATAATTGCCACCCAAGCAAGTCAAGTTTTGTACGTTGAAGATCCAAGTGATGCTAGATGGTTAATTGTGCTTACTCCACCACAGAGAGATTGTGAAGATCAATCACATGACGATGAACTTGGAGATATCATGTTACATAGTCAAGGAGTACCTAGTGATATGCCAAATATCGATGATAGTATTGATTTAGATGAGAATACCTCAACATATGCCTAAACCCTAATATAATCTATACTAACAAATTTCTTTTTAATGTTGCTTTGACAAGATATTCCCCTTATATATGGAGCCAAATATAGTAAGCGATGATTAAGACAAGGAGGTTGGCGTAGATTAGTGGTTGGAGGAGTTGATGACCAAATTGTAGAGAAGCCCAAAAAACAAAGTAAGTAGAGACCTACTATTATGTTCAATGTGACTCGAGCTAGAAGTGAAGGTGAGAGGAAAATAGTGGAATAGAATCAAGATGGTGTACCCATTGGACCTACTCTTTTATTGGATCGTGTGTACACTATCACATCCCCATTAACTATATCCATCATGGATCGATGTGCCTACTGAACTGAAGGACAAGATCTATACCATAGTTGAGGTAAAATTGCTTATAGTTTTTGTACAAGTTTATCTCAATTGACAATGTGACACTAACCGATATTCAATCTCAGGCTGCATTTATAATTGACAGTAGATCTAGAAAGAGCGTTCTTAAGACTTCAGGGACAACATTCTGTCAATTCATGCATTGGTTGACGAAGAAGCATATCTTGTCGTTCAAAAATGAACCTGAACTTTTGAGACGACCCCCATCTATGTATTCTTAAATTAACCAAAAACATTGGGAAGAATTTGTTAGATCCAGACTTTGTCCACATTTTGAGATATCAATGCATTTATTTAGATATTTAGATTTTAAATATTTGTTCATAAACTTTATAAAAACCCCAATACAATGTTATATTTGTGTAGGAGAAAAGGAAAGTTCAACAAGAGAGAAGGAAGAAGAATAAGTATAACCACCGTCTTTCAAGAAAAGGTTATGCTAATCTTCAAGAGGAATTGGTAAGAAGTAGTTTATGTTTGAATTAGTCTTAAAAGCTTCTTAAGCAATCTAATGCATTGTACATATTGAAATGCAGAAAAATAACCCTTTAGAAGAAGGTGATCTTGATCGAGCAAGCATGTGGAAAAAGGCTCGTGTAGATAAAAAAGGAGAATATGAGAATGTAGACGTTCGAGAAATTATGAAACGTATAGTAAGACATATTACAATTTTTCATTCTTTAATGATTTTACGTTTTATCAATTAAAGCTTTAATGTTTTTTTTACATTTGTCAGTTCAAGAATTAGAGAGTATTCAGCTAACAGCACAATCTACACCAACATCCGCACATGGTTTTTGCTCTAGACCAAGATTAGAGTATGATATTCAACGTGAAAAAAATCGCAAGATGAGAAAATGAATGTCACAACAAAGGTGGTTATAGAGGAGGTGAATGTGGATGATGAACATAAGAATGCTATTGATGGAATTGTTGTATTAAATCATGTTTAT

mRNA sequence

ATGCGTTCAATGTTGCAGTGTTTTAGATGCGATTGGGTTGAGAACAATAGTGATATGAAGATTGATAACCTTGGTTTTCTGTTAGTTGATTTAAAAAGAATAGGTCACAAGTCTGATTCGTTTATAATTGCCACCCAAGCAAGTCAAGTTTTGTACGTTGAAGATCCAAGTGATGCTAGATGGTTAATTGTGCTTACTCCACCACAGAGAGATTGTGAAGATCAATCACATGACGATGAACTTGGAGATATCATGTTACATAGTCAAGGAGTACCTAGTGATATGCCAAATATCGATGATAGTATTGATTTAGATGAGAATACCTCAACATATGCCTAA

Coding sequence (CDS)

ATGCGTTCAATGTTGCAGTGTTTTAGATGCGATTGGGTTGAGAACAATAGTGATATGAAGATTGATAACCTTGGTTTTCTGTTAGTTGATTTAAAAAGAATAGGTCACAAGTCTGATTCGTTTATAATTGCCACCCAAGCAAGTCAAGTTTTGTACGTTGAAGATCCAAGTGATGCTAGATGGTTAATTGTGCTTACTCCACCACAGAGAGATTGTGAAGATCAATCACATGACGATGAACTTGGAGATATCATGTTACATAGTCAAGGAGTACCTAGTGATATGCCAAATATCGATGATAGTATTGATTTAGATGAGAATACCTCAACATATGCCTAA
Homology
[Close]
BLAST of CSPI05G13250 vs. TrEMBL
Match: A5B592_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019902 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-19
Identity = 51/102 (50.00%), Postives = 66/102 (64.71%), Query Frame = 1 

Query: 8    FRCDWVENNSDMKIDNLGFLLVDLKRIGHKSDSFIIATQASQVLYVEDPSDARWLIVLTP 67
            F+CDWV++ + +K+D LGF LVDL +IGHKSD FI+ATQA QV YVED  D RW IVL+ 
Sbjct: 959  FKCDWVDSKNGVKVDELGFTLVDLSKIGHKSDPFILATQAQQVFYVEDQVDPRWSIVLSR 1018

Query: 68   PQRDCEDQSHDDELGDIMLHSQGVPSDMPNI---DDSIDLDE 107
            P+ +  D   DD + D  +      + MPNI   D+  D DE
Sbjct: 1019 PKMELFDIEGDDNIADNCMEHHPFANGMPNIKSFDEVEDYDE 1060

[Close]
BLAST of CSPI05G13250 vs. TrEMBL
Match: A5AM06_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042965 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-19
Identity = 51/102 (50.00%), Postives = 66/102 (64.71%), Query Frame = 1 

Query: 8    FRCDWVENNSDMKIDNLGFLLVDLKRIGHKSDSFIIATQASQVLYVEDPSDARWLIVLTP 67
            F+CDWV++ + +K+D LGF LVDL +IGHKSD FI+ATQA QV YVED  D RW IVL+ 
Sbjct: 928  FKCDWVDSKNGVKVDELGFTLVDLSKIGHKSDPFILATQAQQVFYVEDQVDPRWSIVLSR 987

Query: 68   PQRDCEDQSHDDELGDIMLHSQGVPSDMPNI---DDSIDLDE 107
            P+ +  D   DD + D  +      + MPNI   D+  D DE
Sbjct: 988  PKMELFDIEGDDNIADNCMEHHPFANGMPNIKSFDEVEDYDE 1029

[Close]
BLAST of CSPI05G13250 vs. TrEMBL
Match: M5WG01_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb021127mg PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.7e-19
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 1 

Query: 5   LQCFRCDWVENNSDMKIDNLGFLLVDLKRIGHKSDSFIIATQASQVLYVEDPSDARWLIV 64
           +Q  RCDWV+N S + +D LGF LVDL +IGH++D FI+A+Q  QV YV+DP    W +V
Sbjct: 82  IQVLRCDWVDNTSGLSVDKLGFTLVDLSKIGHRNDQFIMASQVKQVFYVDDPMYRGWSVV 141

Query: 65  LTPPQRDCEDQSHDDELGDIMLHSQGVPSDMPNIDDSIDL 105
           L+ P R+  D   DD LGD  +  +     +PN+D   DL
Sbjct: 142 LSMPNREYNDVIGDDVLGDSRIECEPFTRGIPNVDTFDDL 181

[Close]
BLAST of CSPI05G13250 vs. TrEMBL
Match: A5ALA4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030059 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-18
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1 

Query: 8   FRCDWVENNSDMKIDNLGFLLVDLKRIGHKSDSFIIATQASQVLYVEDPSDARWLIVLTP 67
           F+CDWV+N + +K+D LGF LVD  +IGHKSD FI+A+QA QV YVED  D +W IVL+ 
Sbjct: 656 FKCDWVDNKNGIKVDELGFTLVDFSKIGHKSDPFILASQAKQVFYVEDQLDPKWSIVLSI 715

Query: 68  PQRDCEDQSHDDELGDIMLHSQGVPSDMPNIDDSIDLDENTSTY 112
           P +D  +    D+  D  +      S MP ++    +DE+ + Y
Sbjct: 716 PPKDFNNMEGXDDFTDNCMEHHPFISSMPEVESFDVMDESDAIY 759

[Close]
BLAST of CSPI05G13250 vs. TrEMBL
Match: A5AWV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018163 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-18
Identity = 47/107 (43.93%), Postives = 72/107 (67.29%), Query Frame = 1 

Query: 8   FRCDWVENNSDMKIDNLGFLLVDLKRIGHKSDSFIIATQASQVLYVEDPSDARWLIVLTP 67
           F+CDWV+N + +K+D+LGF LVD  ++ HKSD FI+A+QA QV YV+D  D RW +VL+ 
Sbjct: 736 FKCDWVDNKNGIKVDDLGFTLVDFSKMAHKSDPFILASQAKQVFYVQDELDPRWSVVLST 795

Query: 68  PQRDCEDQSHDDELGDIMLHSQGVPSDMPNID--DSIDLDENTSTYA 113
           PQ+D  ++   D+L D  +    V S +P ++  D++D D + + YA
Sbjct: 796 PQQDFLERDEGDDLMDNSIEHHPVISSLPQVESFDAMD-DSDANMYA 841

[Close]
BLAST of CSPI05G13250 vs. NCBI nr
Match: gi|659133664|ref|XP_008466847.1| (PREDICTED: uncharacterized protein LOC103504152, partial [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 4.2e-45
Identity = 88/104 (84.62%), Postives = 95/104 (91.35%), Query Frame = 1 

Query: 8   FRCDWVENNSDMKIDNLGFLLVDLKRIGHKSDSFIIATQASQVLYVEDPSDARWLIVLTP 67
           FRCDWVENN+ MKID+LGF+LVDLKRIGHKSDSFI+ATQA QV YVEDPSDARW IVLTP
Sbjct: 241 FRCDWVENNNGMKIDDLGFVLVDLKRIGHKSDSFIMATQARQVFYVEDPSDARWSIVLTP 300

Query: 68  PQRDCEDQSHDDELGDIMLHSQGVPSDMPNIDDSIDLDENTSTY 112
           PQRDCEDQS+DDELGDIMLH QGVPSDMPN+D   DLD+N STY
Sbjct: 301 PQRDCEDQSNDDELGDIMLHCQGVPSDMPNVDGGNDLDQNMSTY 344

[Close]
BLAST of CSPI05G13250 vs. NCBI nr
Match: gi|659087168|ref|XP_008444308.1| (PREDICTED: uncharacterized protein LOC103487677 [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 1.5e-39
Identity = 82/99 (82.83%), Postives = 88/99 (88.89%), Query Frame = 1 

Query: 13  VENNSDMKIDNLGFLLVDLKRIGHKSDSFIIATQASQVLYVEDPSDARWLIVLTPPQRDC 72
           VENN+ MKI++LGF+LVDLKRIGHKSDSFI+ TQA QV YVEDPSDARW IVLTPPQRDC
Sbjct: 265 VENNNGMKIEDLGFILVDLKRIGHKSDSFIMETQARQVFYVEDPSDARWSIVLTPPQRDC 324

Query: 73  EDQSHDDELGDIMLHSQGVPSDMPNIDDSIDLDENTSTY 112
           EDQ +DDELGDIMLH QGVPSDMPNID   DLDEN STY
Sbjct: 325 EDQLNDDELGDIMLHCQGVPSDMPNIDRGNDLDENMSTY 363

[Close]
BLAST of CSPI05G13250 vs. NCBI nr
Match: gi|659098566|ref|XP_008450202.1| (PREDICTED: uncharacterized protein LOC103491863 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-33
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 1 

Query: 8   FRCDWVENNSDMKIDNLGFLLVDLKRIGHKSDSFIIATQASQVLYVEDPSDARWLIVLTP 67
           FRCDWVENN+ MKID+LGF+LVDLKRIGHKSDSFI+ATQA QV YVEDPSDARW IVLTP
Sbjct: 252 FRCDWVENNNGMKIDDLGFVLVDLKRIGHKSDSFIMATQARQVFYVEDPSDARWSIVLTP 311

Query: 68  PQRDCEDQSHDDELGDIMLH 88
           PQRDCE QS+DDELGD MLH
Sbjct: 312 PQRDCEGQSNDDELGDTMLH 331

[Close]
BLAST of CSPI05G13250 vs. NCBI nr
Match: gi|731434448|ref|XP_010645068.1| (PREDICTED: uncharacterized protein LOC100854451 [Vitis vinifera])

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-19
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 1 

Query: 8   FRCDWVENNSDMKIDNLGFLLVDLKRIGHKSDSFIIATQASQVLYVEDPSDARWLIVLTP 67
           F+CDWV++ + +K+D LGF LVDL +IGHKSD FI+ATQA QV YVED  D RW IVL+ 
Sbjct: 384 FKCDWVDSKNGVKVDELGFTLVDLSKIGHKSDPFILATQAQQVFYVEDQVDPRWSIVLSR 443

Query: 68  PQRDCEDQSHDDELGDIMLHSQGVPSDMPNI---DDSIDLDE 107
           P+ +  D   DD + D  +      ++MPNI   D+  D DE
Sbjct: 444 PKMELFDIEGDDNIADNCMEHHPFANEMPNIKSFDEVEDYDE 485

[Close]
BLAST of CSPI05G13250 vs. NCBI nr
Match: gi|147857802|emb|CAN82870.1| (hypothetical protein VITISV_019902 [Vitis vinifera])

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-19
Identity = 51/102 (50.00%), Postives = 66/102 (64.71%), Query Frame = 1 

Query: 8    FRCDWVENNSDMKIDNLGFLLVDLKRIGHKSDSFIIATQASQVLYVEDPSDARWLIVLTP 67
            F+CDWV++ + +K+D LGF LVDL +IGHKSD FI+ATQA QV YVED  D RW IVL+ 
Sbjct: 959  FKCDWVDSKNGVKVDELGFTLVDLSKIGHKSDPFILATQAQQVFYVEDQVDPRWSIVLSR 1018

Query: 68   PQRDCEDQSHDDELGDIMLHSQGVPSDMPNI---DDSIDLDE 107
            P+ +  D   DD + D  +      + MPNI   D+  D DE
Sbjct: 1019 PKMELFDIEGDDNIADNCMEHHPFANGMPNIKSFDEVEDYDE 1060

The following BLAST results are available for this feature:
BLAST of CSPI05G13250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G13250 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B592_VITVI1.6e-1950.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019902 PE=4 SV=1[more]
A5AM06_VITVI1.6e-1950.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042965 PE=4 SV=1[more]
M5WG01_PRUPE4.7e-1946.00Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb021127mg PE=4 S... [more]
A5ALA4_VITVI1.0e-1844.23Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030059 PE=4 SV=1[more]
A5AWV0_VITVI1.0e-1843.93Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018163 PE=4 SV=1[more]
BLAST of CSPI05G13250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G13250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133664|ref|XP_008466847.1|4.2e-4584.62PREDICTED: uncharacterized protein LOC103504152, partial [Cucumis melo][more]
gi|659087168|ref|XP_008444308.1|1.5e-3982.83PREDICTED: uncharacterized protein LOC103487677 [Cucumis melo][more]
gi|659098566|ref|XP_008450202.1|2.1e-3386.25PREDICTED: uncharacterized protein LOC103491863 [Cucumis melo][more]
gi|731434448|ref|XP_010645068.1|1.0e-1950.00PREDICTED: uncharacterized protein LOC100854451 [Vitis vinifera][more]
gi|147857802|emb|CAN82870.1|2.3e-1950.00hypothetical protein VITISV_019902 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025312DUF4216
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G13250.1CSPI05G13250.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025312Domain of unknown function DUF4216PFAMPF13952DUF4216coord: 7..64
score: 4.5
NoneNo IPR availablePANTHERPTHR10775UNCHARACTERIZEDcoord: 8..65
score: 6.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G13250Cucumber (Chinese Long) v2cpicuB255
CSPI05G13250Melon (DHL92) v3.5.1cpimeB345
CSPI05G13250Melon (DHL92) v3.5.1cpimeB356
CSPI05G13250Watermelon (Charleston Gray)cpiwcgB390
CSPI05G13250Watermelon (97103) v1cpiwmB429
CSPI05G13250Cucurbita pepo (Zucchini)cpecpiB190
CSPI05G13250Cucurbita pepo (Zucchini)cpecpiB443
CSPI05G13250Bottle gourd (USVL1VR-Ls)cpilsiB331
CSPI05G13250Cucumber (Gy14) v2cgybcpiB239
CSPI05G13250Silver-seed gourdcarcpiB0563
CSPI05G13250Silver-seed gourdcarcpiB0866
CSPI05G13250Cucumber (Chinese Long) v3cpicucB304
CSPI05G13250Watermelon (97103) v2cpiwmbB361
CSPI05G13250Wax gourdcpiwgoB489
CSPI05G13250Cucumber (Gy14) v1cgycpiB273
CSPI05G13250Cucurbita maxima (Rimu)cmacpiB299
CSPI05G13250Cucurbita maxima (Rimu)cmacpiB761
CSPI05G13250Cucurbita moschata (Rifu)cmocpiB290
CSPI05G13250Cucurbita moschata (Rifu)cmocpiB751