CSPI05G13190 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G13190
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrotransposon protein
Location	Chr5 : 12764017 .. 12764361 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCCACAGAACTGACGAATCTTTTGAACGCCTTTCTACTGGCCCAACGTCAAATGATAATGACGTTTGACACATTCTTCAATGATAGGAGAAGGATTCCCCAAGTACCGTGTAACACAAGGCATAGGATTAGACAGATTGCGTATTTTCATATGATACACGAGTCTGACCTTGTATGTCAGCAAAGTACGTGCATGGATAGACGTTGTTACGCAATTCTTTGCCATCTCCTACGGACAACGGCTGGATTAGAATCGACTGAAGTTATCGACGTCGAAGAGATGGTTGCTATCTTCCTACACGTGCTTGCGCATGATGTTAAGAACCGCGAGATACAATGA

mRNA sequence

ATGAATCCCACAGAACTGACGAATCTTTTGAACGCCTTTCTACTGGCCCAACGTCAAATGATAATGACGTTTGACACATTCTTCAATGATAGGAGAAGGATTCCCCAAGTACCGTGTAACACAAGGCATAGGATTAGACAGATTGCGTATTTTCATATGATACACGAGTCTGACCTTGTATGTCAGCAAAGTACGTGCATGGATAGACGTTGTTACGCAATTCTTTGCCATCTCCTACGGACAACGGCTGGATTAGAATCGACTGAAGTTATCGACGTCGAAGAGATGGTTGCTATCTTCCTACACGTGCTTGCGCATGATGTTAAGAACCGCGAGATACAATGA

Coding sequence (CDS)

ATGAATCCCACAGAACTGACGAATCTTTTGAACGCCTTTCTACTGGCCCAACGTCAAATGATAATGACGTTTGACACATTCTTCAATGATAGGAGAAGGATTCCCCAAGTACCGTGTAACACAAGGCATAGGATTAGACAGATTGCGTATTTTCATATGATACACGAGTCTGACCTTGTATGTCAGCAAAGTACGTGCATGGATAGACGTTGTTACGCAATTCTTTGCCATCTCCTACGGACAACGGCTGGATTAGAATCGACTGAAGTTATCGACGTCGAAGAGATGGTTGCTATCTTCCTACACGTGCTTGCGCATGATGTTAAGAACCGCGAGATACAATGA

Homology

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BLAST of CSPI05G13190 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-20
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 53  MIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIFLHVLAHDVKNRE 112
           MIHESDLVC+QST MDRR +AILCHLLR  AGL STE++DVEEMVA+FLHVLAHDVKNR 
Sbjct: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 113 IQ 115
           IQ
Sbjct: 61  IQ 62

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BLAST of CSPI05G13190 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1


Query: 1   MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLV 60
           M+  EL +++NAF+ +QRQ+++  +   ND +RI  +P  TRHRIRQ+AYF MIH     
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIH----- 60

Query: 61  CQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIFLHVLAHDVKNREIQ 115
                               T AGL STEV+DVEEMVA+FLH+LAHDVK+R I+
Sbjct: 61  -------------------GTIAGLTSTEVVDVEEMVAMFLHILAHDVKSRVIK 90

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BLAST of CSPI05G13190 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-10
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 1


Query: 31  RRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLESTEV 90
           RR + + P N R  +R      +I+ SD+ C +   MDR  +  LC +LRT   L+ ++ 
Sbjct: 39  RRTLMERPAN-REFLRVENLNRLIYGSDVACMEQLRMDRHTFTTLCSMLRTIGKLKDSKY 98

Query: 91  IDVEEMVAIFLHVLAHDVKNREIQ 115
           IDVEEMVA+FLH+LAH VKNR I+
Sbjct: 99  IDVEEMVALFLHILAHHVKNRVIK 121

[Close]

BLAST of CSPI05G13190 vs. TrEMBL
Match: A0A072V2B5_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g117940 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-09
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 1


Query: 9   LLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMD 68
           +LN F L    M+  F      ++R  +  C  R  +R++ +  +I+ SD+ C ++T MD
Sbjct: 24  MLNLFTL-MTMMLCYFALSNRLKKRKRKWDCYERSLVREVHFQRIIYTSDVACIENTRMD 83

Query: 69  RRCYAILCHLLRTTAGLESTEVIDVEEMVAIFLHVLAHDVKNREIQ 115
           R  +  LC +L+   GL  T  + VEE+VA+FLH+LAH VKNR I+
Sbjct: 84  RPAFHKLCEMLKGIGGLVPTRHMCVEELVAMFLHILAHHVKNRMIR 128

[Close]

BLAST of CSPI05G13190 vs. TrEMBL
Match: A0A0J8EHA8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g204990 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 31/95 (32.63%), Postives = 58/95 (61.05%), Query Frame = 1


Query: 20  MIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLL 79
           +++    ++  R R+ +V  N   R +  A +     ++ +C++   +D RC+  LCH L
Sbjct: 31  ILVAVGAWYGQRYRVNEVTWNECERAQTRATWMNTLRNNRICREQLRLDIRCFEKLCHTL 90

Query: 80  RTTAGLESTEVIDVEEMVAIFLHVLAHDVKNREIQ 115
           ++   L +T  + ++E+VA+FLHVLAHD+KNR++Q
Sbjct: 91  QSKGDLMTTRNVTIKEIVALFLHVLAHDLKNRKMQ 125

[Close]

BLAST of CSPI05G13190 vs. NCBI nr
Match: gi|659131061|ref|XP_008465488.1| (PREDICTED: uncharacterized protein LOC103503107 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 73/114 (64.04%), Postives = 93/114 (81.58%), Query Frame = 1


Query: 1   MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLV 60
           M+  EL +++NAF+ +QRQ+++  +   ND +RI  +P  TRHRIRQ+AYF MIH S+LV
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSNLV 60

Query: 61  CQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIFLHVLAHDVKNREIQ 115
           C++ST MDRRC+ ILCHLLRT AGL STEVIDVEEMVA+FLH+LAH+VKNR IQ
Sbjct: 61  CRRSTRMDRRCFVILCHLLRTIAGLTSTEVIDVEEMVAMFLHILAHNVKNRVIQ 114

[Close]

BLAST of CSPI05G13190 vs. NCBI nr
Match: gi|659109391|ref|XP_008454692.1| (PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 5.8e-34
Identity = 72/114 (63.16%), Postives = 90/114 (78.95%), Query Frame = 1


Query: 1   MNPTELTNLLNAFLLAQRQMIMTFDTFFNDRRRIPQVPCNTRHRIRQIAYFHMIHESDLV 60
           M   EL  ++N F+ +QRQ+++T +   ND +RI  +P   RHRIRQ+AYF MIH SDLV
Sbjct: 1   MGEHELAYIVNVFIASQRQLLLTLELLKNDTKRITHIPYEIRHRIRQLAYFRMIHGSDLV 60

Query: 61  CQQSTCMDRRCYAILCHLLRTTAGLESTEVIDVEEMVAIFLHVLAHDVKNREIQ 115
           C+QST MD+RC+AILCHLLRT A L STEV+DVEEMVA++LH+LAHDVKNR IQ
Sbjct: 61  CRQSTRMDQRCFAILCHLLRTIAELTSTEVVDVEEMVAMYLHILAHDVKNRVIQ 114

[Close]

BLAST of CSPI05G13190 vs. NCBI nr
Match: gi|659113203|ref|XP_008456452.1| (PREDICTED: uncharacterized protein LOC103496395 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-29
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 1


Query: 29  NDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLEST 88
           ND +R+  +P  TRHRIRQ+AYF MIH SDLVC+QST M+RRC+AILCHLLRT AGL ST
Sbjct: 7   NDTKRVTHIPYETRHRIRQLAYFRMIHGSDLVCRQSTRMNRRCFAILCHLLRTIAGLTST 66

Query: 89  EVIDVEEMVAIFLHVLAHDVKNREIQ 115
           +V+DVEEMVA+FLH+LAHDVKNR IQ
Sbjct: 67  KVVDVEEMVAMFLHILAHDVKNRVIQ 92

[Close]

BLAST of CSPI05G13190 vs. NCBI nr
Match: gi|659128055|ref|XP_008464023.1| (PREDICTED: uncharacterized protein LOC103502006 [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 8.1e-28
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 1


Query: 29  NDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLEST 88
           N+ + +P  P +TRHRIR++AYFHMIHESDLVCQQS  MDRR +AILCHLLR   GL ST
Sbjct: 2   NNNKCLPYTPSDTRHRIRELAYFHMIHESDLVCQQSMRMDRRTFAILCHLLRNVDGLSST 61

Query: 89  EVIDVEEMVAIFLHVLAHDVKNREIQ 115
            ++DVEE+VA+FLHVLAHDVKNR IQ
Sbjct: 62  RIVDVEEIVAMFLHVLAHDVKNRVIQ 87

[Close]

BLAST of CSPI05G13190 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-26
Identity = 57/82 (69.51%), Postives = 71/82 (86.59%), Query Frame = 1


Query: 29  NDRRRIPQVPCNTRHRIRQIAYFHMIHESDLVCQQSTCMDRRCYAILCHLLRTTAGLEST 88
           ND +R+PQ P +TRH+IRQ+AYF MIH SDLVC QST MDRR +AILCHLLRT AGL ST
Sbjct: 2   NDNKRLPQTPYDTRHKIRQLAYFRMIHRSDLVCGQSTHMDRRTFAILCHLLRTVAGLSST 61

Query: 89  EVIDVEEMVAIFLHVLAHDVKN 111
           ++++VEEMV +FL++LAH+VKN
Sbjct: 62  KIVNVEEMVTMFLYILAHNVKN 83

The following BLAST results are available for this feature:

BLAST of CSPI05G13190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G13190 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB2_CUCME	1.9e-20	82.26	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB5_CUCME	1.4e-18	46.49	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A5BND9_VITVI	3.1e-10	45.24	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1	[more]
A0A072V2B5_MEDTR	1.2e-09	37.74	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g117940 PE=4 SV=1	[more]
A0A0J8EHA8_BETVU	1.0e-08	32.63	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g204990 PE=4 S...	[more]

BLAST of CSPI05G13190 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G13190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131061\|ref\|XP_008465488.1\|	1.2e-34	64.04	PREDICTED: uncharacterized protein LOC103503107 [Cucumis melo]	[more]
gi\|659109391\|ref\|XP_008454692.1\|	5.8e-34	63.16	PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo]	[more]
gi\|659113203\|ref\|XP_008456452.1\|	1.1e-29	74.42	PREDICTED: uncharacterized protein LOC103496395 [Cucumis melo]	[more]
gi\|659128055\|ref\|XP_008464023.1\|	8.1e-28	70.93	PREDICTED: uncharacterized protein LOC103502006 [Cucumis melo]	[more]
gi\|659093712\|ref\|XP_008447677.1\|	2.6e-26	69.51	PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G13190.1	CSPI05G13190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 113..114 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G13190	Watermelon (Charleston Gray)	cpiwcgB390
CSPI05G13190	Watermelon (97103) v1	cpiwmB429
CSPI05G13190	Cucurbita pepo (Zucchini)	cpecpiB190
CSPI05G13190	Cucurbita pepo (Zucchini)	cpecpiB443
CSPI05G13190	Bottle gourd (USVL1VR-Ls)	cpilsiB331
CSPI05G13190	Cucumber (Gy14) v2	cgybcpiB239
CSPI05G13190	Silver-seed gourd	carcpiB0563
CSPI05G13190	Silver-seed gourd	carcpiB0866
CSPI05G13190	Cucumber (Chinese Long) v3	cpicucB304
CSPI05G13190	Watermelon (97103) v2	cpiwmbB361
CSPI05G13190	Wax gourd	cpiwgoB489
CSPI05G13190	Cucumber (Gy14) v1	cgycpiB273
CSPI05G13190	Cucurbita maxima (Rimu)	cmacpiB299
CSPI05G13190	Cucurbita maxima (Rimu)	cmacpiB761
CSPI05G13190	Cucurbita moschata (Rifu)	cmocpiB290
CSPI05G13190	Cucurbita moschata (Rifu)	cmocpiB751
CSPI05G13190	Cucumber (Chinese Long) v2	cpicuB255
CSPI05G13190	Melon (DHL92) v3.5.1	cpimeB345