CSPI05G13080 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G13080
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 12606159 .. 12606666 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGGTTATCCATAAGGCTCAAAGAACTTGAGTCTAGTTCTACTTCTTTCAAGAAAAATGAAGAAAGACTTGTCGGAAATCGCCGGTTGGGTTGGTCCAAGCAAGAAAGGCATGGGAGAAATAAAGATGCATGCATGATTGAAGCGTCGAAATCCACTTTTCTTTTTTTCATAGGTCAGGCAAAGTTTCTTTTTTCACCACAATATAATATTCGTTCTTTTGGGGTTAATGCTCTTAATGGTGAATCGATCATTCGATATCCTTTGCCTTATGAGAGGACGGCGGAATGGAAGAAAAGTAATGAAACCCGCGATGGCTACTGAATAACCTCCTTTGACTTTCTCAATAATAAAGCCTTTGACTTTTTGATTCGTTTGCCAAATCTTGTTCAGTTCCATCCAAGCTCGGTTTTGTCTGAATCTTCGTGGAAGAAGAAAAAGGGGTTCACCAGCCACTACATCTGTGGATCCCACCAAATAATCATTCAACCTGGCGGCAGCTCGC

mRNA sequence

ATGGAATGGTTATCCATAAGGCTCAAAGAACTTGAGTCTAGTTCTACTTCTTTCAAGAAAAATGAAGAAAGACTTGTCGGAAATCGCCGGTTGGGTTGGTCCAAGCAAGAAAGGCATGGGAGAAATAAAGATGCATGCATGATTGAAGCGTCGAAATCCACTTTTCTTTTTTTCATAGGTCAGGCAAAGTTTCTTTTTTCACCACAATATAATATTCGTTCTTTTGGGGTTAATGCTCTTAATGGTGAATCGATCATTCGATATCCTTTGCCTTATGAGAGGACGGCGGAATGGAAGAAAAGTAATGAAACCCGCGATGGCTACTGA

Coding sequence (CDS)

ATGGAATGGTTATCCATAAGGCTCAAAGAACTTGAGTCTAGTTCTACTTCTTTCAAGAAAAATGAAGAAAGACTTGTCGGAAATCGCCGGTTGGGTTGGTCCAAGCAAGAAAGGCATGGGAGAAATAAAGATGCATGCATGATTGAAGCGTCGAAATCCACTTTTCTTTTTTTCATAGGTCAGGCAAAGTTTCTTTTTTCACCACAATATAATATTCGTTCTTTTGGGGTTAATGCTCTTAATGGTGAATCGATCATTCGATATCCTTTGCCTTATGAGAGGACGGCGGAATGGAAGAAAAGTAATGAAACCCGCGATGGCTACTGA
Homology
[Close]
BLAST of CSPI05G13080 vs. TrEMBL
Match: A0A0A0KPV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G321470 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.2e-15
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1 

Query: 62  AKFLFSPQYNIRSFGVNALNGESIIRYPLPYERTAEWKKSNETR 106
           AKFLFSPQYNIRSFGVNALNGESIIRYPLPYERTAEWKK++  R
Sbjct: 26  AKFLFSPQYNIRSFGVNALNGESIIRYPLPYERTAEWKKTHSLR 69

[Close]
BLAST of CSPI05G13080 vs. NCBI nr
Match: gi|700195732|gb|KGN50909.1| (hypothetical protein Csa_5G321470 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 7.4e-15
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1 

Query: 62  AKFLFSPQYNIRSFGVNALNGESIIRYPLPYERTAEWKKSNETR 106
           AKFLFSPQYNIRSFGVNALNGESIIRYPLPYERTAEWKK++  R
Sbjct: 26  AKFLFSPQYNIRSFGVNALNGESIIRYPLPYERTAEWKKTHSLR 69

The following BLAST results are available for this feature:
BLAST of CSPI05G13080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G13080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPV6_CUCSA5.2e-1590.91Uncharacterized protein OS=Cucumis sativus GN=Csa_5G321470 PE=4 SV=1[more]
BLAST of CSPI05G13080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G13080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195732|gb|KGN50909.1|7.4e-1590.91hypothetical protein Csa_5G321470 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G13080.1CSPI05G13080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G13080Csa5G321470Cucumber (Chinese Long) v2cpicuB248
CSPI05G13080CsaV3_5G020370Cucumber (Chinese Long) v3cpicucB289
CSPI05G13080Cucsa.173640Cucumber (Gy14) v1cgycpiB273
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G13080Cucurbita moschata (Rifu)cmocpiB751
CSPI05G13080Melon (DHL92) v3.5.1cpimeB345
CSPI05G13080Cucumber (Gy14) v2cgybcpiB232
CSPI05G13080Cucumber (Gy14) v1cgycpiB272