CSPI05G12750 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G12750
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr5 : 12050039 .. 12050617 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGCATCTCGCAGCAAACAAAGGAGAATGGTGGAATGTCGATTCTCTACCCGATGTTAACTCCACACAACTACACGGTGCGGACGATAAAGGCAGAAGCAATCCTCGATGTCCAAGGAGTTTGGGATGCAATAGAGCTAGCGAGAGGAGCCGAAGTGGATGTGAAGAAATACAAGAAGGCACGTGCATACATTCTCCAATGCATCCCGAAAGACGTGCTTCTAAAAATCGCAAAGAAGAAGACCGCACAGGAAATATGGGATAGTCACAAGACAAGGTATTTGGGTAGTGAGCGGGTGAAGATGGCAAGAGTTCAAACCTTGAAGAGTGAGCTTAATGTTCTTCGGATGAAGGAAACCGAGACAATCGATGAGTTCATAGGAAAGATCAGCGGATTAGTAAGCAAGTTCACCACCCTCGAAGTCGCACTTGAGGATTCATCATTGGTCAAGAAGCTCCTCGATTCCGTCCCCGACAAATATCTTTCCATTGTCGCCGAAATCAAGCAATTCCAAGATCTTGAAACCATGCCGTTTGAAGAAGCAATTGGACGGATGAAGGCGTACGAGGAATGA

mRNA sequence

ATGACAAGCATCTCGCAGCAAACAAAGGAGAATGGTGGAATGTCGATTCTCTACCCGATGTTAACTCCACACAACTACACGGTGCGGACGATAAAGGCAGAAGCAATCCTCGATGTCCAAGGAGTTTGGGATGCAATAGAGCTAGCGAGAGGAGCCGAAGTGGATGTGAAGAAATACAAGAAGGCACGTGCATACATTCTCCAATGCATCCCGAAAGACGTGCTTCTAAAAATCGCAAAGAAGAAGACCGCACAGGAAATATGGGATAGTCACAAGACAAGGTATTTGGGTAGTGAGCGGGTGAAGATGGCAAGAGTTCAAACCTTGAAGAGTGAGCTTAATGTTCTTCGGATGAAGGAAACCGAGACAATCGATGAGTTCATAGGAAAGATCAGCGGATTAGTAAGCAAGTTCACCACCCTCGAAGTCGCACTTGAGGATTCATCATTGGTCAAGAAGCTCCTCGATTCCGTCCCCGACAAATATCTTTCCATTGTCGCCGAAATCAAGCAATTCCAAGATCTTGAAACCATGCCGTTTGAAGAAGCAATTGGACGGATGAAGGCGTACGAGGAATGA

Coding sequence (CDS)

ATGACAAGCATCTCGCAGCAAACAAAGGAGAATGGTGGAATGTCGATTCTCTACCCGATGTTAACTCCACACAACTACACGGTGCGGACGATAAAGGCAGAAGCAATCCTCGATGTCCAAGGAGTTTGGGATGCAATAGAGCTAGCGAGAGGAGCCGAAGTGGATGTGAAGAAATACAAGAAGGCACGTGCATACATTCTCCAATGCATCCCGAAAGACGTGCTTCTAAAAATCGCAAAGAAGAAGACCGCACAGGAAATATGGGATAGTCACAAGACAAGGTATTTGGGTAGTGAGCGGGTGAAGATGGCAAGAGTTCAAACCTTGAAGAGTGAGCTTAATGTTCTTCGGATGAAGGAAACCGAGACAATCGATGAGTTCATAGGAAAGATCAGCGGATTAGTAAGCAAGTTCACCACCCTCGAAGTCGCACTTGAGGATTCATCATTGGTCAAGAAGCTCCTCGATTCCGTCCCCGACAAATATCTTTCCATTGTCGCCGAAATCAAGCAATTCCAAGATCTTGAAACCATGCCGTTTGAAGAAGCAATTGGACGGATGAAGGCGTACGAGGAATGA
Homology
[Close]
BLAST of CSPI05G12750 vs. TrEMBL
Match: Q2QUP7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os12g15530 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-53
Identity = 109/188 (57.98%), Postives = 144/188 (76.60%), Query Frame = 1 

Query: 5   SQQTKENGGMSILYPMLTPHNYTVRTIKAEAILDVQGVWDAIELARGAEVDVKKYKKARA 64
           + ++   G +S+ YP+LT  NY+   IK EA ++ QG+WDAIE A    VD+KK K+ARA
Sbjct: 430 ASRSMREGIVSLPYPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARA 489

Query: 65  YILQCIPKDVLLKIAKKKTAQEIWDSHKTRYLGSERVKMARVQTLKSELNVLRMKETETI 124
            +   +P+DVL +IAKKKTA+E+W+S KTR+LG ERVK ARVQTLKS+   L MK+TE+I
Sbjct: 490 CLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESI 549

Query: 125 DEFIGKISGLVSKFTTLEVALEDSSLVKKLLDSVPDKYLSIVAEIKQFQDLETMPFEEAI 184
           DEF GKISGL +K + L V ++D   VKKLLDSVPDK+L ++A I+QF DL++MPF+EAI
Sbjct: 550 DEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDSMPFDEAI 609

Query: 185 GRMKAYEE 193
           GR+KAYEE
Sbjct: 610 GRLKAYEE 617

[Close]
BLAST of CSPI05G12750 vs. TrEMBL
Match: Q0JH75_ORYSJ (Os01g0879800 protein OS=Oryza sativa subsp. japonica GN=Os01g0879800 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-53
Identity = 109/188 (57.98%), Postives = 144/188 (76.60%), Query Frame = 1 

Query: 5   SQQTKENGGMSILYPMLTPHNYTVRTIKAEAILDVQGVWDAIELARGAEVDVKKYKKARA 64
           + ++   G +S+ YP+LT  NY+   IK EA ++ QG+WDAIE A    VD+KK K+ARA
Sbjct: 17  ASRSMREGIVSLPYPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARA 76

Query: 65  YILQCIPKDVLLKIAKKKTAQEIWDSHKTRYLGSERVKMARVQTLKSELNVLRMKETETI 124
            +   +P+DVL +IAKKKTA+E+W+S KTR+LG ERVK ARVQTLKS+   L MK+TE+I
Sbjct: 77  CLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESI 136

Query: 125 DEFIGKISGLVSKFTTLEVALEDSSLVKKLLDSVPDKYLSIVAEIKQFQDLETMPFEEAI 184
           DEF GKISGL +K + L V ++D   VKKLLDSVPDK+L ++A I+QF DL++MPF+EAI
Sbjct: 137 DEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDSMPFDEAI 196

Query: 185 GRMKAYEE 193
           GR+KAYEE
Sbjct: 197 GRLKAYEE 204

[Close]
BLAST of CSPI05G12750 vs. TrEMBL
Match: Q2QVG3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g12910 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.7e-50
Identity = 108/188 (57.45%), Postives = 137/188 (72.87%), Query Frame = 1 

Query: 5   SQQTKENGGMSILYPMLTPHNYTVRTIKAEAILDVQGVWDAIELARGAEVDVKKYKKARA 64
           + ++   GG+S+ YPMLT  NY+   IK EA ++ QG+WDAIE A    V+ KK K A A
Sbjct: 8   ASRSMREGGVSLPYPMLTSTNYSTWAIKMEANMEAQGIWDAIESAADDVVEKKKDKMALA 67

Query: 65  YILQCIPKDVLLKIAKKKTAQEIWDSHKTRYLGSERVKMARVQTLKSELNVLRMKETETI 124
            +   +P +VL +IA KKTA+E W+S KTR+LG +RVK ARVQTLKSE   L MK+TETI
Sbjct: 68  CLFGAVPDEVLQQIANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEFKALCMKKTETI 127

Query: 125 DEFIGKISGLVSKFTTLEVALEDSSLVKKLLDSVPDKYLSIVAEIKQFQDLETMPFEEAI 184
           DEF GKISGL +  + L   + D  LVKKLLDSVP+K+L I+A I+QF DL+TMPFEEAI
Sbjct: 128 DEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQFCDLDTMPFEEAI 187

Query: 185 GRMKAYEE 193
           GR+KA+EE
Sbjct: 188 GRLKAFEE 195

[Close]
BLAST of CSPI05G12750 vs. TrEMBL
Match: Q0IZT5_ORYSJ (Os09g0551200 protein OS=Oryza sativa subsp. japonica GN=Os09g0551200 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.7e-50
Identity = 108/188 (57.45%), Postives = 137/188 (72.87%), Query Frame = 1 

Query: 5   SQQTKENGGMSILYPMLTPHNYTVRTIKAEAILDVQGVWDAIELARGAEVDVKKYKKARA 64
           + ++   GG+S+ YPMLT  NY+   IK EA ++ QG+WDAIE A    V+ KK K A A
Sbjct: 17  ASRSMREGGVSLPYPMLTSTNYSTWAIKMEANMEAQGIWDAIESAADDVVEKKKDKMALA 76

Query: 65  YILQCIPKDVLLKIAKKKTAQEIWDSHKTRYLGSERVKMARVQTLKSELNVLRMKETETI 124
            +   +P +VL +IA KKTA+E W+S KTR+LG +RVK ARVQTLKSE   L MK+TETI
Sbjct: 77  CLFGAVPDEVLQQIANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEFKALCMKKTETI 136

Query: 125 DEFIGKISGLVSKFTTLEVALEDSSLVKKLLDSVPDKYLSIVAEIKQFQDLETMPFEEAI 184
           DEF GKISGL +  + L   + D  LVKKLLDSVP+K+L I+A I+QF DL+TMPFEEAI
Sbjct: 137 DEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQFCDLDTMPFEEAI 196

Query: 185 GRMKAYEE 193
           GR+KA+EE
Sbjct: 197 GRLKAFEE 204

[Close]
BLAST of CSPI05G12750 vs. TrEMBL
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.2e-45
Identity = 90/182 (49.45%), Postives = 139/182 (76.37%), Query Frame = 1 

Query: 11  NGGMSILYPMLTPHNYTVRTIKAEAILDVQGVWDAIELARGAEVDVKKYKKARAYILQCI 70
           + G +  YP LT  NYT   I+ +A+++ QGVWDAIE A G  VD ++ KKAR+++LQ  
Sbjct: 16  SSGSAFSYPQLTATNYTSWCIRVQAMMEDQGVWDAIEPAAGVAVDPRRDKKARSHLLQSQ 75

Query: 71  PKDVLLKIAKKKTAQEIWDSHKTRYLGSERVKMARVQTLKSELNVLRMKETETIDEFIGK 130
           P+D+L+++AKK++A+E+WD  KTR++G++RV+ AR+QTLK E   + M+  ET+D++ G+
Sbjct: 76  PEDLLMQVAKKRSAKEVWDCLKTRFVGADRVREARLQTLKGEFGAMVMEPGETLDQYAGR 135

Query: 131 ISGLVSKFTTLEVALEDSSLVKKLLDSVPDKYLSIVAEIKQFQDLETMPFEEAIGRMKAY 190
           I+ +  + + L   L DS++VKKL D+VP+K++S+VA I+QF D++TMPFEEA+GR+KAY
Sbjct: 136 ITAMSVRHSALGSTLGDSAMVKKLFDTVPEKFVSLVAGIEQFYDIDTMPFEEAVGRLKAY 195

Query: 191 EE 193
           EE
Sbjct: 196 EE 197

[Close]
BLAST of CSPI05G12750 vs. NCBI nr
Match: gi|778722274|ref|XP_011658449.1| (PREDICTED: uncharacterized protein LOC105436008 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 3.3e-74
Identity = 153/192 (79.69%), Postives = 162/192 (84.38%), Query Frame = 1 

Query: 1   MTSISQQTKENGGMSILYPMLTPHNYTVRTIKAEAILDVQGVWDAIELARGAEVDVKKYK 60
           M S+SQQTKENG M I YPML PHNYT+ TIK EAILD Q VW+AIE  RG EVDVKK K
Sbjct: 1   MASVSQQTKENGRMPIFYPMLCPHNYTMWTIKTEAILDTQEVWEAIEPIRGLEVDVKKDK 60

Query: 61  KARAYILQCIPKDVLLKIAKKKTAQEIWDSHKTRYLGSERVKMARVQTLKSELNVLRMKE 120
           KA  YILQCI +DVLL+IAKKK+A+EIWD+ KTRYLGSERVKMARV  LKSE NVLRMKE
Sbjct: 61  KACVYILQCILEDVLLQIAKKKSAKEIWDNLKTRYLGSERVKMARVGILKSEFNVLRMKE 120

Query: 121 TETIDEFIGKISGLVSKFTTLEVALEDSSLVKKLLDSVPDKYLSIVAEIKQFQDLETMPF 180
           TETIDEF GKIS L SKFTTL VALEDSSLVKKLLDSVPDKYL IV  I+QFQDLETMPF
Sbjct: 121 TETIDEFAGKISKLASKFTTLGVALEDSSLVKKLLDSVPDKYLLIVTRIEQFQDLETMPF 180

Query: 181 EEAIGRMKAYEE 193
           EE IGRM  YEE
Sbjct: 181 EETIGRMMVYEE 192

[Close]
BLAST of CSPI05G12750 vs. NCBI nr
Match: gi|77554492|gb|ABA97288.1| (retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa Japonica Group])

HSP 1 Score: 217.2 bits (552), Expect = 2.4e-53
Identity = 109/188 (57.98%), Postives = 144/188 (76.60%), Query Frame = 1 

Query: 5   SQQTKENGGMSILYPMLTPHNYTVRTIKAEAILDVQGVWDAIELARGAEVDVKKYKKARA 64
           + ++   G +S+ YP+LT  NY+   IK EA ++ QG+WDAIE A    VD+KK K+ARA
Sbjct: 430 ASRSMREGIVSLPYPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARA 489

Query: 65  YILQCIPKDVLLKIAKKKTAQEIWDSHKTRYLGSERVKMARVQTLKSELNVLRMKETETI 124
            +   +P+DVL +IAKKKTA+E+W+S KTR+LG ERVK ARVQTLKS+   L MK+TE+I
Sbjct: 490 CLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESI 549

Query: 125 DEFIGKISGLVSKFTTLEVALEDSSLVKKLLDSVPDKYLSIVAEIKQFQDLETMPFEEAI 184
           DEF GKISGL +K + L V ++D   VKKLLDSVPDK+L ++A I+QF DL++MPF+EAI
Sbjct: 550 DEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDSMPFDEAI 609

Query: 185 GRMKAYEE 193
           GR+KAYEE
Sbjct: 610 GRLKAYEE 617

[Close]
BLAST of CSPI05G12750 vs. NCBI nr
Match: gi|113534520|dbj|BAF06903.1| (Os01g0879800 [Oryza sativa Japonica Group])

HSP 1 Score: 217.2 bits (552), Expect = 2.4e-53
Identity = 109/188 (57.98%), Postives = 144/188 (76.60%), Query Frame = 1 

Query: 5   SQQTKENGGMSILYPMLTPHNYTVRTIKAEAILDVQGVWDAIELARGAEVDVKKYKKARA 64
           + ++   G +S+ YP+LT  NY+   IK EA ++ QG+WDAIE A    VD+KK K+ARA
Sbjct: 17  ASRSMREGIVSLPYPVLTSTNYSTWAIKMEANMEAQGIWDAIEPAADEAVDIKKDKQARA 76

Query: 65  YILQCIPKDVLLKIAKKKTAQEIWDSHKTRYLGSERVKMARVQTLKSELNVLRMKETETI 124
            +   +P+DVL +IAKKKTA+E+W+S KTR+LG ERVK ARVQTLKS+   L MK+TE+I
Sbjct: 77  CLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDFKALHMKDTESI 136

Query: 125 DEFIGKISGLVSKFTTLEVALEDSSLVKKLLDSVPDKYLSIVAEIKQFQDLETMPFEEAI 184
           DEF GKISGL +K + L V ++D   VKKLLDSVPDK+L ++A I+QF DL++MPF+EAI
Sbjct: 137 DEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQFSDLDSMPFDEAI 196

Query: 185 GRMKAYEE 193
           GR+KAYEE
Sbjct: 197 GRLKAYEE 204

[Close]
BLAST of CSPI05G12750 vs. NCBI nr
Match: gi|77553519|gb|ABA96315.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 205.3 bits (521), Expect = 9.6e-50
Identity = 108/188 (57.45%), Postives = 137/188 (72.87%), Query Frame = 1 

Query: 5   SQQTKENGGMSILYPMLTPHNYTVRTIKAEAILDVQGVWDAIELARGAEVDVKKYKKARA 64
           + ++   GG+S+ YPMLT  NY+   IK EA ++ QG+WDAIE A    V+ KK K A A
Sbjct: 8   ASRSMREGGVSLPYPMLTSTNYSTWAIKMEANMEAQGIWDAIESAADDVVEKKKDKMALA 67

Query: 65  YILQCIPKDVLLKIAKKKTAQEIWDSHKTRYLGSERVKMARVQTLKSELNVLRMKETETI 124
            +   +P +VL +IA KKTA+E W+S KTR+LG +RVK ARVQTLKSE   L MK+TETI
Sbjct: 68  CLFGAVPDEVLQQIANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEFKALCMKKTETI 127

Query: 125 DEFIGKISGLVSKFTTLEVALEDSSLVKKLLDSVPDKYLSIVAEIKQFQDLETMPFEEAI 184
           DEF GKISGL +  + L   + D  LVKKLLDSVP+K+L I+A I+QF DL+TMPFEEAI
Sbjct: 128 DEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQFCDLDTMPFEEAI 187

Query: 185 GRMKAYEE 193
           GR+KA+EE
Sbjct: 188 GRLKAFEE 195

[Close]
BLAST of CSPI05G12750 vs. NCBI nr
Match: gi|113632099|dbj|BAF25780.1| (Os09g0551200 [Oryza sativa Japonica Group])

HSP 1 Score: 205.3 bits (521), Expect = 9.6e-50
Identity = 108/188 (57.45%), Postives = 137/188 (72.87%), Query Frame = 1 

Query: 5   SQQTKENGGMSILYPMLTPHNYTVRTIKAEAILDVQGVWDAIELARGAEVDVKKYKKARA 64
           + ++   GG+S+ YPMLT  NY+   IK EA ++ QG+WDAIE A    V+ KK K A A
Sbjct: 17  ASRSMREGGVSLPYPMLTSTNYSTWAIKMEANMEAQGIWDAIESAADDVVEKKKDKMALA 76

Query: 65  YILQCIPKDVLLKIAKKKTAQEIWDSHKTRYLGSERVKMARVQTLKSELNVLRMKETETI 124
            +   +P +VL +IA KKTA+E W+S KTR+LG +RVK ARVQTLKSE   L MK+TETI
Sbjct: 77  CLFGAVPDEVLQQIANKKTAKEAWESLKTRFLGVDRVKKARVQTLKSEFKALCMKKTETI 136

Query: 125 DEFIGKISGLVSKFTTLEVALEDSSLVKKLLDSVPDKYLSIVAEIKQFQDLETMPFEEAI 184
           DEF GKISGL +  + L   + D  LVKKLLDSVP+K+L I+A I+QF DL+TMPFEEAI
Sbjct: 137 DEFAGKISGLANAMSGLGATMTDDELVKKLLDSVPEKFLHIIAAIEQFCDLDTMPFEEAI 196

Query: 185 GRMKAYEE 193
           GR+KA+EE
Sbjct: 197 GRLKAFEE 204

The following BLAST results are available for this feature:
BLAST of CSPI05G12750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G12750 vs. TrEMBL
Match NameE-valueIdentityDescription
Q2QUP7_ORYSJ1.7e-5357.98Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Oryza sativa... [more]
Q0JH75_ORYSJ1.7e-5357.98Os01g0879800 protein OS=Oryza sativa subsp. japonica GN=Os01g0879800 PE=4 SV=1[more]
Q2QVG3_ORYSJ6.7e-5057.45Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap... [more]
Q0IZT5_ORYSJ6.7e-5057.45Os09g0551200 protein OS=Oryza sativa subsp. japonica GN=Os09g0551200 PE=4 SV=1[more]
Q10RM4_ORYSJ2.2e-4549.45Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
BLAST of CSPI05G12750 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G12750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722274|ref|XP_011658449.1|3.3e-7479.69PREDICTED: uncharacterized protein LOC105436008 [Cucumis sativus][more]
gi|77554492|gb|ABA97288.1|2.4e-5357.98retrotransposon protein, putative, Ty1-copia subclass, expressed [Oryza sativa J... [more]
gi|113534520|dbj|BAF06903.1|2.4e-5357.98Os01g0879800 [Oryza sativa Japonica Group][more]
gi|77553519|gb|ABA96315.1|9.6e-5057.45retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro... [more]
gi|113632099|dbj|BAF25780.1|9.6e-5057.45Os09g0551200 [Oryza sativa Japonica Group][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
cellular_component GO:0031410 cytoplasmic vesicle
molecular_function GO:0003677 DNA binding
molecular_function GO:0046914 transition metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G12750.1CSPI05G12750.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..192
score: 6.0
NoneNo IPR availablePANTHERPTHR11439:SF172SUBFAMILY NOT NAMEDcoord: 10..192
score: 6.0
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 57..191
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G12750Cucumber (Chinese Long) v3cpicucB299
CSPI05G12750Watermelon (97103) v2cpiwmbB377
CSPI05G12750Wax gourdcpiwgoB509
CSPI05G12750Cucurbita maxima (Rimu)cmacpiB749
CSPI05G12750Cucurbita maxima (Rimu)cmacpiB751
CSPI05G12750Cucurbita maxima (Rimu)cmacpiB772
CSPI05G12750Cucurbita moschata (Rifu)cmocpiB760
CSPI05G12750Cucurbita moschata (Rifu)cmocpiB740
CSPI05G12750Cucurbita moschata (Rifu)cmocpiB743
CSPI05G12750Melon (DHL92) v3.5.1cpimeB373
CSPI05G12750Watermelon (Charleston Gray)cpiwcgB373
CSPI05G12750Watermelon (97103) v1cpiwmB445
CSPI05G12750Cucurbita pepo (Zucchini)cpecpiB428
CSPI05G12750Cucurbita pepo (Zucchini)cpecpiB432
CSPI05G12750Cucurbita pepo (Zucchini)cpecpiB456
CSPI05G12750Bottle gourd (USVL1VR-Ls)cpilsiB337
CSPI05G12750Melon (DHL92) v3.6.1cpimedB353
CSPI05G12750Cucumber (Gy14) v2cgybcpiB235
CSPI05G12750Silver-seed gourdcarcpiB0205
CSPI05G12750Silver-seed gourdcarcpiB0389