CSPI05G12740 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G12740
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr5 : 12049429 .. 12049932 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAAGGGCACAGATTTTGTGGTACCGATCGAGGAAGACGGCGAGGACGTGGTCGTGGCCGTGGTCGTGGCACTGAGCGTCAAAGTAATGCGGGAGGCACTAGCAACACTGGAAATGGCACTCGTGATAAAAGTCACAGTAAATGTTTGGGCAACAAGATGAGACATTACGCGTCGGAATGTCGTGGAAAAGGTCATGACGACGAAGCTCATCTAACTTGTGTCGCCGAAGAAGAACCGACTTTGATGATGGTCGTGTCCCAGGAGGGGACACGCATTAGATGTGATCAGGAGGATGTCATACTACTCAACAAAGAGCGGTTGTTGCTAGAGATGTATTGCAACGACAAGAATGGAGAAAATACTGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACATGACTAGCCATCGTGAGAAGTTCCAAGAATTAGATGAAAGCTTCACTGGGAGGGTGAAGTTTGGCGATGGATCAACCATTCAGATCATGGAAAAATGA

mRNA sequence

ATGAACAAAGGGCACAGATTTTGTGGTACCGATCGAGGAAGACGGCGAGGACGTGGTCGTGGCCGTGGTCGTGGCACTGAGCGTCAAAGTAATGCGGGAGGCACTAGCAACACTGGAAATGGCACTCGTGATAAAAGTCACAGTAAATGTTTGGGCAACAAGATGAGACATTACGCGTCGGAATGTCGTGGAAAAGGTCATGACGACGAAGCTCATCTAACTTGTGTCGCCGAAGAAGAACCGACTTTGATGATGGTCGTGTCCCAGGAGGGGACACGCATTAGATGTGATCAGGAGGATGTCATACTACTCAACAAAGAGCGGTTGTTGCTAGAGATGTATTGCAACGACAAGAATGGAGAAAATACTGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACATGACTAGCCATCGTGAGAAGTTCCAAGAATTAGATGAAAGCTTCACTGGGAGGGTGAAGTTTGGCGATGGATCAACCATTCAGATCATGGAAAAATGA

Coding sequence (CDS)

ATGAACAAAGGGCACAGATTTTGTGGTACCGATCGAGGAAGACGGCGAGGACGTGGTCGTGGCCGTGGTCGTGGCACTGAGCGTCAAAGTAATGCGGGAGGCACTAGCAACACTGGAAATGGCACTCGTGATAAAAGTCACAGTAAATGTTTGGGCAACAAGATGAGACATTACGCGTCGGAATGTCGTGGAAAAGGTCATGACGACGAAGCTCATCTAACTTGTGTCGCCGAAGAAGAACCGACTTTGATGATGGTCGTGTCCCAGGAGGGGACACGCATTAGATGTGATCAGGAGGATGTCATACTACTCAACAAAGAGCGGTTGTTGCTAGAGATGTATTGCAACGACAAGAATGGAGAAAATACTGATGTTTGGTATCTTGACAACGGTGCTAGTAACCACATGACTAGCCATCGTGAGAAGTTCCAAGAATTAGATGAAAGCTTCACTGGGAGGGTGAAGTTTGGCGATGGATCAACCATTCAGATCATGGAAAAATGA
Homology
[Close]
BLAST of CSPI05G12740 vs. TrEMBL
Match: Q84SW8_ORYSJ (Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.1e-22
Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 1 

Query: 9   GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKG 68
           G +RG+  GRGRGRGRG     ++GG S  G+G RDKSH KC    +  HY+++C   K 
Sbjct: 195 GANRGQA-GRGRGRGRGRGGTQSSGGGSGGGSGGRDKSHIKCFNCEEFGHYSTQCPHPKK 254

Query: 69  HDDEAHLTCVAEEEPTLMMVVSQEGTRI-RCDQEDVILLNKERLLLEMYCNDKNGENTDV 128
              EAHL    +  PTL++ V++      R D    +++++ER+   +   +K     D+
Sbjct: 255 KKAEAHLAQTEDAGPTLLLAVTEAVQNASRQDALCGLVVHEERVWPRLMLAEKGAAAGDL 314

Query: 129 WYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           WYLDNGASNHM+    KF+ELDE+ TG+V+FGD S++QIM K
Sbjct: 315 WYLDNGASNHMSGDHRKFRELDETVTGQVRFGDASSVQIMGK 355

[Close]
BLAST of CSPI05G12740 vs. TrEMBL
Match: Q7XMW2_ORYSJ (OSJNBb0040D15.12 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0040D15.12 PE=4 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-21
Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 1 

Query: 9   GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKG 68
           G +RG+  GRGRGRGRG     ++GG+S  G   RDKSH KC    +  HY+++C   K 
Sbjct: 55  GANRGQA-GRGRGRGRGRGGTQSSGGSSGGGGSGRDKSHIKCFNCEEFGHYSTQCPHPKK 114

Query: 69  HDDEAHLTCVAEEEPTLMMVVSQEGTRIRC-DQEDVILLNKERLLLEMYCNDKNGENTDV 128
              EAHL    +  P L++ V++      C D    +++++ER+   +   +K     D+
Sbjct: 115 KKAEAHLAQTEDAGPALLLAVTEAVQNAPCQDALCGLVVHEERVWPRLMLAEKGAAAGDL 174

Query: 129 WYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIM 166
           WYLDNGASNHM+  R KF+ELDE+ TG+V+FGD S++QIM
Sbjct: 175 WYLDNGASNHMSGDRRKFRELDETVTGQVRFGDASSVQIM 213

[Close]
BLAST of CSPI05G12740 vs. TrEMBL
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 71/159 (44.65%), Postives = 94/159 (59.12%), Query Frame = 1 

Query: 12  RGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKGHDD 71
           RGR RGRG G   GT R  +  G+   G G RDKSH KC    +  HY+++C   K    
Sbjct: 253 RGRGRGRGAGGRGGTPRGDSGAGS---GGGGRDKSHIKCFNCEEYGHYSNQCPHPKKKKG 312

Query: 72  EAHLTCVAEEEPTLMMVVSQE-GTRIRCDQEDVILLNKERLLLEMYCNDKNGENTDVWYL 131
           EAHL    +  P L++ V+++   R  C     +++ ++R+  ++   D  G   DVW+L
Sbjct: 313 EAHLAQTEDAGPALLLAVTEDVPERASCG----LVVREQRVWPKLLLADAGGHAGDVWFL 372

Query: 132 DNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           DNGASNHMT  R KF+ELDES TGRVKFGD ST+QI  K
Sbjct: 373 DNGASNHMTGDRSKFRELDESITGRVKFGDASTVQIKGK 404

[Close]
BLAST of CSPI05G12740 vs. TrEMBL
Match: Q84MV7_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=Os03g28110 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 1 

Query: 9   GTDRGR-RRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGK 68
           G +RG+ RR RGRGRGRG  + S  G    +G G RDKSH KC    +  HY+++C   K
Sbjct: 237 GANRGQARRSRGRGRGRGGTQSSGGG----SGGGGRDKSHIKCFNYEEFGHYSTQCPHPK 296

Query: 69  GHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDV-ILLNKERLLLEMYCNDKNGENTD 128
               EAHL    +  P L++ V++          D  +++++ER+   +   +K     D
Sbjct: 297 KKKAEAHLVQTDDAGPALLLAVTKAVQNAPGQGMDCGLVVHEERVWPRLMLAEKGAAAGD 356

Query: 129 VWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           +WYLDNGASNHMT  R KF+ELDE+ TG V+FGD S++QIM K
Sbjct: 357 LWYLDNGASNHMTGDRRKFRELDETVTGVVRFGDASSVQIMGK 395

[Close]
BLAST of CSPI05G12740 vs. TrEMBL
Match: Q10K27_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os03g28110 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 1 

Query: 9   GTDRGR-RRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGK 68
           G +RG+ RR RGRGRGRG  + S  G    +G G RDKSH KC    +  HY+++C   K
Sbjct: 237 GANRGQARRSRGRGRGRGGTQSSGGG----SGGGGRDKSHIKCFNYEEFGHYSTQCPHPK 296

Query: 69  GHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDV-ILLNKERLLLEMYCNDKNGENTD 128
               EAHL    +  P L++ V++          D  +++++ER+   +   +K     D
Sbjct: 297 KKKAEAHLVQTDDAGPALLLAVTKAVQNAPGQGMDCGLVVHEERVWPRLMLAEKGAAAGD 356

Query: 129 VWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           +WYLDNGASNHMT  R KF+ELDE+ TG V+FGD S++QIM K
Sbjct: 357 LWYLDNGASNHMTGDRRKFRELDETVTGVVRFGDASSVQIMGK 395

[Close]
BLAST of CSPI05G12740 vs. NCBI nr
Match: gi|29150404|gb|AAO72413.1| (gag-pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 112.5 bits (280), Expect = 7.4e-22
Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 1 

Query: 9   GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKG 68
           G +RG+  GRGRGRGRG     ++GG S  G+G RDKSH KC    +  HY+++C   K 
Sbjct: 195 GANRGQA-GRGRGRGRGRGGTQSSGGGSGGGSGGRDKSHIKCFNCEEFGHYSTQCPHPKK 254

Query: 69  HDDEAHLTCVAEEEPTLMMVVSQEGTRI-RCDQEDVILLNKERLLLEMYCNDKNGENTDV 128
              EAHL    +  PTL++ V++      R D    +++++ER+   +   +K     D+
Sbjct: 255 KKAEAHLAQTEDAGPTLLLAVTEAVQNASRQDALCGLVVHEERVWPRLMLAEKGAAAGDL 314

Query: 129 WYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           WYLDNGASNHM+    KF+ELDE+ TG+V+FGD S++QIM K
Sbjct: 315 WYLDNGASNHMSGDHRKFRELDETVTGQVRFGDASSVQIMGK 355

[Close]
BLAST of CSPI05G12740 vs. NCBI nr
Match: gi|38345658|emb|CAE04422.2| (OSJNBb0040D15.12 [Oryza sativa Japonica Group])

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 1 

Query: 9   GTDRGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKG 68
           G +RG+  GRGRGRGRG     ++GG+S  G   RDKSH KC    +  HY+++C   K 
Sbjct: 55  GANRGQA-GRGRGRGRGRGGTQSSGGSSGGGGSGRDKSHIKCFNCEEFGHYSTQCPHPKK 114

Query: 69  HDDEAHLTCVAEEEPTLMMVVSQEGTRIRC-DQEDVILLNKERLLLEMYCNDKNGENTDV 128
              EAHL    +  P L++ V++      C D    +++++ER+   +   +K     D+
Sbjct: 115 KKAEAHLAQTEDAGPALLLAVTEAVQNAPCQDALCGLVVHEERVWPRLMLAEKGAAAGDL 174

Query: 129 WYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIM 166
           WYLDNGASNHM+  R KF+ELDE+ TG+V+FGD S++QIM
Sbjct: 175 WYLDNGASNHMSGDRRKFRELDETVTGQVRFGDASSVQIM 213

[Close]
BLAST of CSPI05G12740 vs. NCBI nr
Match: gi|108706239|gb|ABF94034.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-21
Identity = 71/159 (44.65%), Postives = 94/159 (59.12%), Query Frame = 1 

Query: 12  RGRRRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGKGHDD 71
           RGR RGRG G   GT R  +  G+   G G RDKSH KC    +  HY+++C   K    
Sbjct: 253 RGRGRGRGAGGRGGTPRGDSGAGS---GGGGRDKSHIKCFNCEEYGHYSNQCPHPKKKKG 312

Query: 72  EAHLTCVAEEEPTLMMVVSQE-GTRIRCDQEDVILLNKERLLLEMYCNDKNGENTDVWYL 131
           EAHL    +  P L++ V+++   R  C     +++ ++R+  ++   D  G   DVW+L
Sbjct: 313 EAHLAQTEDAGPALLLAVTEDVPERASCG----LVVREQRVWPKLLLADAGGHAGDVWFL 372

Query: 132 DNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           DNGASNHMT  R KF+ELDES TGRVKFGD ST+QI  K
Sbjct: 373 DNGASNHMTGDRSKFRELDESITGRVKFGDASTVQIKGK 404

[Close]
BLAST of CSPI05G12740 vs. NCBI nr
Match: gi|30017513|gb|AAP12935.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 1 

Query: 9   GTDRGR-RRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGK 68
           G +RG+ RR RGRGRGRG  + S  G    +G G RDKSH KC    +  HY+++C   K
Sbjct: 237 GANRGQARRSRGRGRGRGGTQSSGGG----SGGGGRDKSHIKCFNYEEFGHYSTQCPHPK 296

Query: 69  GHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDV-ILLNKERLLLEMYCNDKNGENTD 128
               EAHL    +  P L++ V++          D  +++++ER+   +   +K     D
Sbjct: 297 KKKAEAHLVQTDDAGPALLLAVTKAVQNAPGQGMDCGLVVHEERVWPRLMLAEKGAAAGD 356

Query: 129 VWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           +WYLDNGASNHMT  R KF+ELDE+ TG V+FGD S++QIM K
Sbjct: 357 LWYLDNGASNHMTGDRRKFRELDETVTGVVRFGDASSVQIMGK 395

[Close]
BLAST of CSPI05G12740 vs. NCBI nr
Match: gi|108708653|gb|ABF96448.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 1 

Query: 9   GTDRGR-RRGRGRGRGRGTERQSNAGGTSNTGNGTRDKSHSKCLG-NKMRHYASEC-RGK 68
           G +RG+ RR RGRGRGRG  + S  G    +G G RDKSH KC    +  HY+++C   K
Sbjct: 237 GANRGQARRSRGRGRGRGGTQSSGGG----SGGGGRDKSHIKCFNYEEFGHYSTQCPHPK 296

Query: 69  GHDDEAHLTCVAEEEPTLMMVVSQEGTRIRCDQEDV-ILLNKERLLLEMYCNDKNGENTD 128
               EAHL    +  P L++ V++          D  +++++ER+   +   +K     D
Sbjct: 297 KKKAEAHLVQTDDAGPALLLAVTKAVQNAPGQGMDCGLVVHEERVWPRLMLAEKGAAAGD 356

Query: 129 VWYLDNGASNHMTSHREKFQELDESFTGRVKFGDGSTIQIMEK 168
           +WYLDNGASNHMT  R KF+ELDE+ TG V+FGD S++QIM K
Sbjct: 357 LWYLDNGASNHMTGDRRKFRELDETVTGVVRFGDASSVQIMGK 395

The following BLAST results are available for this feature:
BLAST of CSPI05G12740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G12740 vs. TrEMBL
Match NameE-valueIdentityDescription
Q84SW8_ORYSJ5.1e-2243.21Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1[more]
Q7XMW2_ORYSJ1.1e-2142.50OSJNBb0040D15.12 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0040D15.12 PE=... [more]
Q10RM4_ORYSJ1.5e-2144.65Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
Q84MV7_ORYSJ1.3e-2042.94Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
Q10K27_ORYSJ1.3e-2042.94Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap... [more]
BLAST of CSPI05G12740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G12740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|29150404|gb|AAO72413.1|7.4e-2243.21gag-pol polyprotein [Oryza sativa Japonica Group][more]
gi|38345658|emb|CAE04422.2|1.6e-2142.50OSJNBb0040D15.12 [Oryza sativa Japonica Group][more]
gi|108706239|gb|ABF94034.1|2.1e-2144.65retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group][more]
gi|30017513|gb|AAP12935.1|1.8e-2042.94retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group][more]
gi|108708653|gb|ABF96448.1|1.8e-2042.94retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G12740.1CSPI05G12740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..81
score: 4.8E-19coord: 104..164
score: 4.8
NoneNo IPR availablePANTHERPTHR11439:SF127SUBFAMILY NOT NAMEDcoord: 10..81
score: 4.8E-19coord: 104..164
score: 4.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G12740Cucurbita maxima (Rimu)cmacpiB749
CSPI05G12740Cucurbita maxima (Rimu)cmacpiB751
CSPI05G12740Cucurbita maxima (Rimu)cmacpiB772
CSPI05G12740Cucurbita moschata (Rifu)cmocpiB760
CSPI05G12740Cucurbita moschata (Rifu)cmocpiB740
CSPI05G12740Cucurbita moschata (Rifu)cmocpiB743
CSPI05G12740Melon (DHL92) v3.5.1cpimeB373
CSPI05G12740Watermelon (Charleston Gray)cpiwcgB373
CSPI05G12740Watermelon (97103) v1cpiwmB445
CSPI05G12740Cucurbita pepo (Zucchini)cpecpiB428
CSPI05G12740Cucurbita pepo (Zucchini)cpecpiB432
CSPI05G12740Cucurbita pepo (Zucchini)cpecpiB456
CSPI05G12740Bottle gourd (USVL1VR-Ls)cpilsiB337
CSPI05G12740Melon (DHL92) v3.6.1cpimedB353
CSPI05G12740Cucumber (Gy14) v2cgybcpiB235
CSPI05G12740Silver-seed gourdcarcpiB0205
CSPI05G12740Silver-seed gourdcarcpiB0389
CSPI05G12740Cucumber (Chinese Long) v3cpicucB299
CSPI05G12740Watermelon (97103) v2cpiwmbB377
CSPI05G12740Wax gourdcpiwgoB509