CSPI05G12730 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G12730
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr5 : 12046489 .. 12047097 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGACAATTCATTTTGGGCTCAATTATACGAACGGTCCCAGAGAATTCAATATCTTCGGTTACTCTGACAGTGATTTAGCCGGTGATCTCGACGGGTGGAAAAACACAAGTGGAATGACATTCTACTTATACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAACATTGTGGTTAAGATACCTTGTTAGCGAGATAGTCGGAGTGGAGCCAAGGTCGGTAACATTATTTGTGGACAACAAATCCTCGATAGCTCTCATGAAGAATCCCGTATTTCATGGTCGCAGCAAGCACATAGATACACGTTTTCATTTCATTCGAGAGTGTGTCGAGAATGGACAAATTATCATTGAATTTGTCAACACTAGAGAACAACGAGCCGATGTTCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTGAGCTACTTGGTGTTCGTAATTCAGAATCATGTCAGGATTAG

mRNA sequence

ATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGACAATTCATTTTGGGCTCAATTATACGAACGGTCCCAGAGAATTCAATATCTTCGGTTACTCTGACAGTGATTTAGCCGGTGATCTCGACGGGTGGAAAAACACAAGTGGAATGACATTCTACTTATACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAACATTGTGGTTAAGATACCTTGTTAGCGAGATAGTCGGAGTGGAGCCAAGGTCGGTAACATTATTTGTGGACAACAAATCCTCGATAGCTCTCATGAAGAATCCCGTATTTCATGGTCGCAGCAAGCACATAGATACACGTTTTCATTTCATTCGAGAGTGTGTCGAGAATGGACAAATTATCATTGAATTTGTCAACACTAGAGAACAACGAGCCGATGTTCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTGAGCTACTTGGTGTTCGTAATTCAGAATCATGTCAGGATTAG

Coding sequence (CDS)

ATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGACAATTCATTTTGGGCTCAATTATACGAACGGTCCCAGAGAATTCAATATCTTCGGTTACTCTGACAGTGATTTAGCCGGTGATCTCGACGGGTGGAAAAACACAAGTGGAATGACATTCTACTTATACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAACATTGTGGTTAAGATACCTTGTTAGCGAGATAGTCGGAGTGGAGCCAAGGTCGGTAACATTATTTGTGGACAACAAATCCTCGATAGCTCTCATGAAGAATCCCGTATTTCATGGTCGCAGCAAGCACATAGATACACGTTTTCATTTCATTCGAGAGTGTGTCGAGAATGGACAAATTATCATTGAATTTGTCAACACTAGAGAACAACGAGCCGATGTTCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTGAGCTACTTGGTGTTCGTAATTCAGAATCATGTCAGGATTAG

Homology

[Close]

BLAST of CSPI05G12730 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 77/197 (39.09%), Postives = 126/197 (63.96%), Query Frame = 1


Query: 1    MASRYMERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKN 60
            + SR++E P   H++ VK ILRYLRGT    L +  G  +  + GY+D+D+AGD+D  K+
Sbjct: 1135 VVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF--GGSDPILKGYTDADMAGDIDNRKS 1194

Query: 61   TSGMTFYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSV 120
            ++G  F      +SW S+ QK VALS+ EAE+IAAT    + +WL+  + E+ G+  +  
Sbjct: 1195 STGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQEL-GLHQKEY 1254

Query: 121  TLFVDNKSSIALMKNPVFHGRSKHIDTRFHFIRECVENGQIIIEFVNTREQRADVLTKAL 180
             ++ D++S+I L KN ++H R+KHID R+H+IRE V++  + +  ++T E  AD+LTK +
Sbjct: 1255 VVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVV 1314

Query: 181  TGVKLAAMRELLGVRNS 198
               K    +EL+G+ ++
Sbjct: 1315 PRNKFELCKELVGMHSN 1328

[Close]

BLAST of CSPI05G12730 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 136.0 bits (341), Expect = 4.7e-31
Identity = 73/194 (37.63%), Postives = 118/194 (60.82%), Query Frame = 1


Query: 3    SRYMERPTTMHYKVVKQILRYLRGTIHFGLNYT-NGPREFNIFGYSDSDLAGDLDGWKNT 62
            SRY  +  +  ++ +K++LRYL+GTI   L +  N   E  I GY DSD AG     K+T
Sbjct: 1207 SRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKST 1266

Query: 63   SGMTFYLYE-SLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSV 122
            +G  F +++ +L+ WN+++Q +VA SS EAE++A   A  + LWL++L++ I       +
Sbjct: 1267 TGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPI 1326

Query: 123  TLFVDNKSSIALMKNPVFHGRSKHIDTRFHFIRECVENGQIIIEFVNTREQRADVLTKAL 182
             ++ DN+  I++  NP  H R+KHID ++HF RE V+N  I +E++ T  Q AD+ TK L
Sbjct: 1327 KIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPL 1386

Query: 183  TGVKLAAMRELLGV 195
               +   +R+ LG+
Sbjct: 1387 PAARFVELRDKLGL 1400

[Close]

BLAST of CSPI05G12730 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-10
Identity = 34/99 (34.34%), Postives = 59/99 (59.60%), Query Frame = 1


Query: 6   MERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKNTSGMT 65
           M  PT   + ++K++LRY++GTI  GL Y +   + N+  + DSD AG     ++T+G  
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGL-YIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFC 187

Query: 66  FYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLW 105
            +L  +++SW++++Q TV+ SS E E+ A    A +  W
Sbjct: 188 TFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CSPI05G12730 vs. TrEMBL
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.0e-73
Identity = 137/202 (67.82%), Postives = 165/202 (81.68%), Query Frame = 1


Query: 1    MASRYMERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKN 60
            +ASR+MERPT MH+K VKQILRY++GT+ +GL Y  G     I GY+DSDLAGDLD  ++
Sbjct: 1208 VASRFMERPTVMHFKAVKQILRYIKGTMDYGLVYAAGTGALKITGYTDSDLAGDLDDRRS 1267

Query: 61   TSGMTFYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSV 120
            T GM FY+ +SLV+W+SQKQKTVALSSCEAEF+AATTAACQ LWLR L++E+ GVE ++V
Sbjct: 1268 TGGMAFYINQSLVAWSSQKQKTVALSSCEAEFMAATTAACQALWLRLLLAEVAGVEEKAV 1327

Query: 121  TLFVDNKSSIALMKNPVFHGRSKHIDTRFHFIRECVENGQIIIEFVNTREQRADVLTKAL 180
             LFVDN+S+IALMKNPVFHGRSKHIDTR+HFIRECV+ GQI++EFV T EQRAD LTK L
Sbjct: 1328 KLFVDNRSAIALMKNPVFHGRSKHIDTRYHFIRECVDGGQIVVEFVRTEEQRADALTKGL 1387

Query: 181  TGVKLAAMRELLGVRNSESCQD 203
               KL   R LLGVR+  S Q+
Sbjct: 1388 PAAKLVTARHLLGVRSLGSRQN 1409

[Close]

BLAST of CSPI05G12730 vs. TrEMBL
Match: B8BDZ6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 7.2e-71
Identity = 136/202 (67.33%), Postives = 162/202 (80.20%), Query Frame = 1


Query: 1    MASRYMERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKN 60
            +ASR+MERPTTMH K VK ILRYL+GT+  GL + +G    +I G++DSDLAGD+D  ++
Sbjct: 1226 VASRFMERPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRS 1285

Query: 61   TSGMTFYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSV 120
            T GM FY+  SLVSW SQKQKTVALSSCEAEF+AAT AAC  LWLR L+SE++G E + V
Sbjct: 1286 TGGMAFYVNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKPV 1345

Query: 121  TLFVDNKSSIALMKNPVFHGRSKHIDTRFHFIRECVENGQIIIEFVNTREQRADVLTKAL 180
             LFVDNKS+IALMKNPVFHGRSKHIDTR+HFIRECVE+GQI+IEFV++ EQRAD +TK L
Sbjct: 1346 KLFVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVSSEEQRADAMTKGL 1405

Query: 181  TGVKLAAMRELLGVRNSESCQD 203
               KLA  R LLGVR+    QD
Sbjct: 1406 PAAKLATARHLLGVRDLRPRQD 1427

[Close]

BLAST of CSPI05G12730 vs. TrEMBL
Match: Q0J8A6_ORYSJ (Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 9.5e-71
Identity = 136/202 (67.33%), Postives = 161/202 (79.70%), Query Frame = 1


Query: 1    MASRYMERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKN 60
            +ASR+MERPTTMH K VK ILRYL+GT+  GL + +G    +I G++DSDLAGD+D  ++
Sbjct: 1226 VASRFMERPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRS 1285

Query: 61   TSGMTFYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSV 120
            T GM FY+  SLVSW SQKQKTVALSSCEAEF+AAT AAC  LWLR L+SE++G E + V
Sbjct: 1286 TGGMAFYVNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKRV 1345

Query: 121  TLFVDNKSSIALMKNPVFHGRSKHIDTRFHFIRECVENGQIIIEFVNTREQRADVLTKAL 180
             LFVDNKS+IALMKNPVFHGRSKHIDTR+HFIRECVE+GQI+IEFV + EQRAD +TK L
Sbjct: 1346 KLFVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVRSEEQRADAMTKGL 1405

Query: 181  TGVKLAAMRELLGVRNSESCQD 203
               KLA  R LLGVR+    QD
Sbjct: 1406 PAAKLATARHLLGVRDLRPRQD 1427

[Close]

BLAST of CSPI05G12730 vs. TrEMBL
Match: Q84SW8_ORYSJ (Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 8.9e-69
Identity = 134/196 (68.37%), Postives = 157/196 (80.10%), Query Frame = 1


Query: 1    MASRYMERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKN 60
            +ASR+MERPT MH+K VKQILRYL+GTI+ GL ++ G     I G++DSDLAGD D  ++
Sbjct: 1141 VASRFMERPTVMHFKAVKQILRYLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDRRS 1200

Query: 61   TSGMTFYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSV 120
            TSGM FY   SLVSW+SQKQKTVALSSCEAEF+AAT AAC  LWLR L+ E++G E R V
Sbjct: 1201 TSGMAFYFNGSLVSWSSQKQKTVALSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPV 1260

Query: 121  TLFVDNKSSIALMKNPVFHGRSKHIDTRFHFIRECVENGQIIIEFVNTREQRADVLTKAL 180
             L+VDNKS+IALMKNPVFHGRSKHIDTR+HFIRECVE+G+I IEFV   EQRAD LTK L
Sbjct: 1261 KLYVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGKIQIEFVRIEEQRADALTKGL 1320

Query: 181  TGVKLAAMRELLGVRN 197
               +LA  R LLGVR+
Sbjct: 1321 PAARLATARHLLGVRD 1336

[Close]

BLAST of CSPI05G12730 vs. TrEMBL
Match: Q7XMW3_ORYSJ (OSJNBb0040D15.11 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0040D15.11 PE=4 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 1.2e-68
Identity = 133/196 (67.86%), Postives = 157/196 (80.10%), Query Frame = 1


Query: 1   MASRYMERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKN 60
           + SR+MERPT MH+K +KQILRYL+GTI+ GL ++ G     I G++DSDLAGD D  ++
Sbjct: 148 VVSRFMERPTVMHFKALKQILRYLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDSRS 207

Query: 61  TSGMTFYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSV 120
           TSGM FY   SLVSW+SQKQKTVALSSCEAEF+AAT AAC  LWLR L+ E++G E R V
Sbjct: 208 TSGMAFYFNGSLVSWSSQKQKTVALSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPV 267

Query: 121 TLFVDNKSSIALMKNPVFHGRSKHIDTRFHFIRECVENGQIIIEFVNTREQRADVLTKAL 180
            L+VDNKS+IALMKNPVFHGRSKHIDTR+HFIRECVE+G+I IEFV T EQRAD LTK L
Sbjct: 268 KLYVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGKIQIEFVRTEEQRADALTKGL 327

Query: 181 TGVKLAAMRELLGVRN 197
              +LA  R LLGVR+
Sbjct: 328 PAARLATARHLLGVRD 343

[Close]

BLAST of CSPI05G12730 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 98.6 bits (244), Expect = 4.7e-21
Identity = 54/152 (35.53%), Postives = 87/152 (57.24%), Query Frame = 1


Query: 3   SRYMERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKNTS 62
           S++ E P   H + V +IL Y++GT+  GL Y++   E  +  +SD+      D  ++T+
Sbjct: 403 SQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS-QAEMQLQVFSDASFQSCKDTRRSTN 462

Query: 63  GMTFYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSVTL 122
           G   +L  SL+SW S+KQ+ V+ SS EAE+ A + A  + +WL     E+     +   L
Sbjct: 463 GYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLL 522

Query: 123 FVDNKSSIALMKNPVFHGRSKHIDTRFHFIRE 155
           F DN ++I +  N VFH R+KHI++  H +RE
Sbjct: 523 FCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of CSPI05G12730 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-11
Identity = 34/99 (34.34%), Postives = 59/99 (59.60%), Query Frame = 1


Query: 6   MERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKNTSGMT 65
           M  PT   + ++K++LRY++GTI  GL Y +   + N+  + DSD AG     ++T+G  
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGL-YIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFC 187

Query: 66  FYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLW 105
            +L  +++SW++++Q TV+ SS E E+ A    A +  W
Sbjct: 188 TFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CSPI05G12730 vs. NCBI nr
Match: gi|108706239|gb|ABF94034.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 283.5 bits (724), Expect = 2.9e-73
Identity = 137/202 (67.82%), Postives = 165/202 (81.68%), Query Frame = 1


Query: 1    MASRYMERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKN 60
            +ASR+MERPT MH+K VKQILRY++GT+ +GL Y  G     I GY+DSDLAGDLD  ++
Sbjct: 1208 VASRFMERPTVMHFKAVKQILRYIKGTMDYGLVYAAGTGALKITGYTDSDLAGDLDDRRS 1267

Query: 61   TSGMTFYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSV 120
            T GM FY+ +SLV+W+SQKQKTVALSSCEAEF+AATTAACQ LWLR L++E+ GVE ++V
Sbjct: 1268 TGGMAFYINQSLVAWSSQKQKTVALSSCEAEFMAATTAACQALWLRLLLAEVAGVEEKAV 1327

Query: 121  TLFVDNKSSIALMKNPVFHGRSKHIDTRFHFIRECVENGQIIIEFVNTREQRADVLTKAL 180
             LFVDN+S+IALMKNPVFHGRSKHIDTR+HFIRECV+ GQI++EFV T EQRAD LTK L
Sbjct: 1328 KLFVDNRSAIALMKNPVFHGRSKHIDTRYHFIRECVDGGQIVVEFVRTEEQRADALTKGL 1387

Query: 181  TGVKLAAMRELLGVRNSESCQD 203
               KL   R LLGVR+  S Q+
Sbjct: 1388 PAAKLVTARHLLGVRSLGSRQN 1409

[Close]

BLAST of CSPI05G12730 vs. NCBI nr
Match: gi|218201855|gb|EEC84282.1| (hypothetical protein OsI_30754 [Oryza sativa Indica Group])

HSP 1 Score: 275.0 bits (702), Expect = 1.0e-70
Identity = 136/202 (67.33%), Postives = 162/202 (80.20%), Query Frame = 1


Query: 1    MASRYMERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKN 60
            +ASR+MERPTTMH K VK ILRYL+GT+  GL + +G    +I G++DSDLAGD+D  ++
Sbjct: 1226 VASRFMERPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRS 1285

Query: 61   TSGMTFYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSV 120
            T GM FY+  SLVSW SQKQKTVALSSCEAEF+AAT AAC  LWLR L+SE++G E + V
Sbjct: 1286 TGGMAFYVNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKPV 1345

Query: 121  TLFVDNKSSIALMKNPVFHGRSKHIDTRFHFIRECVENGQIIIEFVNTREQRADVLTKAL 180
             LFVDNKS+IALMKNPVFHGRSKHIDTR+HFIRECVE+GQI+IEFV++ EQRAD +TK L
Sbjct: 1346 KLFVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVSSEEQRADAMTKGL 1405

Query: 181  TGVKLAAMRELLGVRNSESCQD 203
               KLA  R LLGVR+    QD
Sbjct: 1406 PAAKLATARHLLGVRDLRPRQD 1427

[Close]

BLAST of CSPI05G12730 vs. NCBI nr
Match: gi|113622864|dbj|BAF22809.1| (Os08g0125300 [Oryza sativa Japonica Group])

HSP 1 Score: 274.6 bits (701), Expect = 1.4e-70
Identity = 136/202 (67.33%), Postives = 161/202 (79.70%), Query Frame = 1


Query: 1    MASRYMERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKN 60
            +ASR+MERPTTMH K VK ILRYL+GT+  GL + +G    +I G++DSDLAGD+D  ++
Sbjct: 1226 VASRFMERPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRS 1285

Query: 61   TSGMTFYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSV 120
            T GM FY+  SLVSW SQKQKTVALSSCEAEF+AAT AAC  LWLR L+SE++G E + V
Sbjct: 1286 TGGMAFYVNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKRV 1345

Query: 121  TLFVDNKSSIALMKNPVFHGRSKHIDTRFHFIRECVENGQIIIEFVNTREQRADVLTKAL 180
             LFVDNKS+IALMKNPVFHGRSKHIDTR+HFIRECVE+GQI+IEFV + EQRAD +TK L
Sbjct: 1346 KLFVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVRSEEQRADAMTKGL 1405

Query: 181  TGVKLAAMRELLGVRNSESCQD 203
               KLA  R LLGVR+    QD
Sbjct: 1406 PAAKLATARHLLGVRDLRPRQD 1427

[Close]

BLAST of CSPI05G12730 vs. NCBI nr
Match: gi|29150404|gb|AAO72413.1| (gag-pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 268.1 bits (684), Expect = 1.3e-68
Identity = 134/196 (68.37%), Postives = 157/196 (80.10%), Query Frame = 1


Query: 1    MASRYMERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKN 60
            +ASR+MERPT MH+K VKQILRYL+GTI+ GL ++ G     I G++DSDLAGD D  ++
Sbjct: 1141 VASRFMERPTVMHFKAVKQILRYLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDRRS 1200

Query: 61   TSGMTFYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSV 120
            TSGM FY   SLVSW+SQKQKTVALSSCEAEF+AAT AAC  LWLR L+ E++G E R V
Sbjct: 1201 TSGMAFYFNGSLVSWSSQKQKTVALSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPV 1260

Query: 121  TLFVDNKSSIALMKNPVFHGRSKHIDTRFHFIRECVENGQIIIEFVNTREQRADVLTKAL 180
             L+VDNKS+IALMKNPVFHGRSKHIDTR+HFIRECVE+G+I IEFV   EQRAD LTK L
Sbjct: 1261 KLYVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGKIQIEFVRIEEQRADALTKGL 1320

Query: 181  TGVKLAAMRELLGVRN 197
               +LA  R LLGVR+
Sbjct: 1321 PAARLATARHLLGVRD 1336

[Close]

BLAST of CSPI05G12730 vs. NCBI nr
Match: gi|38345657|emb|CAE04421.2| (OSJNBb0040D15.11 [Oryza sativa Japonica Group])

HSP 1 Score: 267.7 bits (683), Expect = 1.7e-68
Identity = 133/196 (67.86%), Postives = 157/196 (80.10%), Query Frame = 1


Query: 1   MASRYMERPTTMHYKVVKQILRYLRGTIHFGLNYTNGPREFNIFGYSDSDLAGDLDGWKN 60
           + SR+MERPT MH+K +KQILRYL+GTI+ GL ++ G     I G++DSDLAGD D  ++
Sbjct: 148 VVSRFMERPTVMHFKALKQILRYLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDSRS 207

Query: 61  TSGMTFYLYESLVSWNSQKQKTVALSSCEAEFIAATTAACQTLWLRYLVSEIVGVEPRSV 120
           TSGM FY   SLVSW+SQKQKTVALSSCEAEF+AAT AAC  LWLR L+ E++G E R V
Sbjct: 208 TSGMAFYFNGSLVSWSSQKQKTVALSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPV 267

Query: 121 TLFVDNKSSIALMKNPVFHGRSKHIDTRFHFIRECVENGQIIIEFVNTREQRADVLTKAL 180
            L+VDNKS+IALMKNPVFHGRSKHIDTR+HFIRECVE+G+I IEFV T EQRAD LTK L
Sbjct: 268 KLYVDNKSAIALMKNPVFHGRSKHIDTRYHFIRECVESGKIQIEFVRTEEQRADALTKGL 327

Query: 181 TGVKLAAMRELLGVRN 197
              +LA  R LLGVR+
Sbjct: 328 PAARLATARHLLGVRD 343

The following BLAST results are available for this feature:

BLAST of CSPI05G12730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.6e-34	39.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	4.7e-31	37.63	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M810_ARATH	3.5e-10	34.34	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CSPI05G12730 vs. TrEMBL


Match Name	E-value	Identity	Description
Q10RM4_ORYSJ	2.0e-73	67.82	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
B8BDZ6_ORYSI	7.2e-71	67.33	Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4...	[more]
Q0J8A6_ORYSJ	9.5e-71	67.33	Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1	[more]
Q84SW8_ORYSJ	8.9e-69	68.37	Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1	[more]
Q7XMW3_ORYSJ	1.2e-68	67.86	OSJNBb0040D15.11 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0040D15.11 PE=...	[more]

BLAST of CSPI05G12730 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	4.7e-21	35.53	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.0e-11	34.34	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CSPI05G12730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|108706239\|gb\|ABF94034.1\|	2.9e-73	67.82	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]
gi\|218201855\|gb\|EEC84282.1\|	1.0e-70	67.33	hypothetical protein OsI_30754 [Oryza sativa Indica Group]	[more]
gi\|113622864\|dbj\|BAF22809.1\|	1.4e-70	67.33	Os08g0125300 [Oryza sativa Japonica Group]	[more]
gi\|29150404\|gb\|AAO72413.1\|	1.3e-68	68.37	gag-pol polyprotein [Oryza sativa Japonica Group]	[more]
gi\|38345657\|emb\|CAE04421.2\|	1.7e-68	67.86	OSJNBb0040D15.11 [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G12730.1	CSPI05G12730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..119 score: 2.5
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 3..119 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G12730	Cucurbita maxima (Rimu)	cmacpiB749
CSPI05G12730	Cucurbita maxima (Rimu)	cmacpiB751
CSPI05G12730	Cucurbita maxima (Rimu)	cmacpiB772
CSPI05G12730	Cucurbita moschata (Rifu)	cmocpiB760
CSPI05G12730	Cucurbita moschata (Rifu)	cmocpiB740
CSPI05G12730	Cucurbita moschata (Rifu)	cmocpiB743
CSPI05G12730	Melon (DHL92) v3.5.1	cpimeB373
CSPI05G12730	Watermelon (Charleston Gray)	cpiwcgB373
CSPI05G12730	Watermelon (97103) v1	cpiwmB445
CSPI05G12730	Cucurbita pepo (Zucchini)	cpecpiB428
CSPI05G12730	Cucurbita pepo (Zucchini)	cpecpiB432
CSPI05G12730	Cucurbita pepo (Zucchini)	cpecpiB456
CSPI05G12730	Bottle gourd (USVL1VR-Ls)	cpilsiB337
CSPI05G12730	Melon (DHL92) v3.6.1	cpimedB353
CSPI05G12730	Cucumber (Gy14) v2	cgybcpiB235
CSPI05G12730	Silver-seed gourd	carcpiB0205
CSPI05G12730	Silver-seed gourd	carcpiB0389
CSPI05G12730	Cucumber (Chinese Long) v3	cpicucB299
CSPI05G12730	Watermelon (97103) v2	cpiwmbB377
CSPI05G12730	Wax gourd	cpiwgoB509