CSPI05G12510 (gene) Wild cucumber (PI 183967)

NameCSPI05G12510
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionC2H2 and C2HC zinc fingers superfamily protein
LocationChr5 : 11779755 .. 11780180 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTAGAGAAACAAAAAAGTGATGGGAGTCATTCAACATCTTGGCATGAGTGTAGTATTTGCAAGAAGAGCTTCAAAAGTGCAAAAGCTTTAGGAGGACATATGCGAGTGCATAACACTGGGGAGATAGACGCTAAGTTAAAGCAATCATCATCGGGACCAATCTCCACAGATTTGAGATGGGTAGTCCCGTCAGCTATTGCAGAAGGTAGTAGTCGAGATCGAAACCGAGGCAAGGGTAAGAAGGTACAAGAACTTCAACTTTTCAGCCAAAAACCCTCCAAGTTGAAGAAAAAGCAGTCCGATGAGAAGGCAGGAGGACAATCATCTCAACATGATAATGTTGACAATGAGTTGGATCTTGAACTTAGATTAGGATCTAACCCAAAGAAGTCAACTCCAACTATATTTAAGTTCTTCTGA

mRNA sequence

ATGAATTTAGAGAAACAAAAAAGTGATGGGAGTCATTCAACATCTTGGCATGAGTGTAGTATTTGCAAGAAGAGCTTCAAAAGTGCAAAAGCTTTAGGAGGACATATGCGAGTGCATAACACTGGGGAGATAGACGCTAAGTTAAAGCAATCATCATCGGGACCAATCTCCACAGATTTGAGATGGGTAGTCCCGTCAGCTATTGCAGAAGGTAGTAGTCGAGATCGAAACCGAGGCAAGGGTAAGAAGGTACAAGAACTTCAACTTTTCAGCCAAAAACCCTCCAAGTTGAAGAAAAAGCAGTCCGATGAGAAGGCAGGAGGACAATCATCTCAACATGATAATGTTGACAATGAGTTGGATCTTGAACTTAGATTAGGATCTAACCCAAAGAAGTCAACTCCAACTATATTTAAGTTCTTCTGA

Coding sequence (CDS)

ATGAATTTAGAGAAACAAAAAAGTGATGGGAGTCATTCAACATCTTGGCATGAGTGTAGTATTTGCAAGAAGAGCTTCAAAAGTGCAAAAGCTTTAGGAGGACATATGCGAGTGCATAACACTGGGGAGATAGACGCTAAGTTAAAGCAATCATCATCGGGACCAATCTCCACAGATTTGAGATGGGTAGTCCCGTCAGCTATTGCAGAAGGTAGTAGTCGAGATCGAAACCGAGGCAAGGGTAAGAAGGTACAAGAACTTCAACTTTTCAGCCAAAAACCCTCCAAGTTGAAGAAAAAGCAGTCCGATGAGAAGGCAGGAGGACAATCATCTCAACATGATAATGTTGACAATGAGTTGGATCTTGAACTTAGATTAGGATCTAACCCAAAGAAGTCAACTCCAACTATATTTAAGTTCTTCTGA
BLAST of CSPI05G12510 vs. TrEMBL
Match: A0A0A0KR10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289630 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-70
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 1

Query: 1   MNLEKQKSDGSHSTSWHECSICKKSFKSAKALGGHMRVHNTGEIDAKLKQSSSGPISTDL 60
           MNLEKQKS GSHSTSWHECSICKKSFKSAKALGGHMRVHNTGEIDAKLKQSS GPISTDL
Sbjct: 1   MNLEKQKSGGSHSTSWHECSICKKSFKSAKALGGHMRVHNTGEIDAKLKQSSLGPISTDL 60

Query: 61  RWVVPSAIAEGSSRDRNRGKGKKVQELQLFSQKPSKLKKKQSDEKAGGQSSQHDNVDNEL 120
           RWVVPSAIAEGSSRDRNRGKGKKVQELQLFSQKPSKLKKKQSDEKAGGQSSQHDNVDNEL
Sbjct: 61  RWVVPSAIAEGSSRDRNRGKGKKVQELQLFSQKPSKLKKKQSDEKAGGQSSQHDNVDNEL 120

Query: 121 DLELRLGSNPKKSTPTIFKFF 142
           DLELRLGSNPKKSTPTIFKFF
Sbjct: 121 DLELRLGSNPKKSTPTIFKFF 141

BLAST of CSPI05G12510 vs. TrEMBL
Match: A0A0D2LXE8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G112700 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 59/174 (33.91%), Postives = 85/174 (48.85%), Query Frame = 1

Query: 2   NLEKQKSD--GSHSTSWHECSICKKSFKSAKALGGHMRVHNTGEIDAKLKQSSSGPIST- 61
           N +K  SD  G+     ++C+ CK+ F +A+ALGGHM +H   +  AKLKQ S    +T 
Sbjct: 10  NPDKASSDEQGASPARSYDCTFCKRGFSNAQALGGHMNIHRRDK--AKLKQPSPTHETTA 69

Query: 62  -------DLRWVVPSAIAEGSSRDRNRGK------------------GKKVQELQLFSQK 121
                  D+  ++PS     SS  + R                    G ++++L LF +K
Sbjct: 70  TTQQSNFDISKIIPSYSHTPSSHGKWRWVLQDDGADARTDKTSDHIVGSQIRQLPLFDEK 129

Query: 122 PSKLKKK-QSDEKAG---GQSSQHDNVDNELDLELRLGSNPKKSTP--TIFKFF 142
           PSK  +  +S  + G   G SS    + +ELDLELRLG  P  S+P  T  KFF
Sbjct: 130 PSKSDQNPRSQVQEGLEKGFSSTQPPLGSELDLELRLGPEPHDSSPPKTTKKFF 181

BLAST of CSPI05G12510 vs. TrEMBL
Match: A0A0A0LXG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G524710 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.5e-06
Identity = 56/169 (33.14%), Postives = 78/169 (46.15%), Query Frame = 1

Query: 4   EKQKSDGSHSTSWHECSICKKSFKSAKALGGHMRVHNTGEIDAKLKQS------SSGP-- 63
           E+Q      +   +EC+ CK+ F +A+ALGGHM +H   +  AKLKQS      SS P  
Sbjct: 15  EEQSGVNQSTVRSYECNFCKRGFTNAQALGGHMNIHRKEK--AKLKQSITTSSLSSSPNK 74

Query: 64  ----------ISTDLRWVVPSAIAEGSSRDRNRGKG--------KKVQELQLF-SQKPSK 123
                       T L WVV   I+  + ++  R KG        ++ Q+L LF    PS 
Sbjct: 75  MVVDTPKMMSTPTRLPWVV---ISPSTRKEHGRSKGGLEETLISEEFQQLPLFVENNPSN 134

Query: 124 LKKK-----------QSDEKAGGQSSQHDNVDNELDLELRLGSNPKKST 135
           + +              D K  G  S+H +  +ELDLELRLG  P+ ST
Sbjct: 135 MDQNLEIRQVLPIDVDCDSKL-GSPSRHGSSVSELDLELRLGPEPQNST 177

BLAST of CSPI05G12510 vs. TrEMBL
Match: A0A0S3SD05_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G203200 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.7e-06
Identity = 48/156 (30.77%), Postives = 69/156 (44.23%), Query Frame = 1

Query: 3   LEKQKSDGSHSTSWH------ECSICKKSFKSAKALGGHMRVHNTGEIDAKLKQSSSGPI 62
           + +  SDG    + H      EC+ C++ F +A+ALGGHM +H   +   K +QSS+ P 
Sbjct: 11  ISENPSDGEDQGATHVTSRSYECNFCRRGFSNAQALGGHMNIHRKDKAKLKQQQSSNQP- 70

Query: 63  STDLRWVVPSAIAEGSSRDRNRGK---------------GKKVQELQLFSQKP--SKLKK 122
              L  V+P      S  +RN  K                   Q+L LF + P  S+  K
Sbjct: 71  --SLDKVIPPQDQTKSGEERNTPKWNWNVSQEEHASSRASHTRQQLPLFEESPTSSETLK 130

Query: 123 KQSDEKAGGQSSQHDNVDNELDLELRLGSNPKKSTP 136
            Q      G      +   +LDLELRLG  P+ S+P
Sbjct: 131 PQGQNTTDGALLSTRDSSLKLDLELRLGLEPQDSSP 163

BLAST of CSPI05G12510 vs. TrEMBL
Match: A0A0L9T7Z6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan238s005200 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.7e-06
Identity = 48/156 (30.77%), Postives = 69/156 (44.23%), Query Frame = 1

Query: 3   LEKQKSDGSHSTSWH------ECSICKKSFKSAKALGGHMRVHNTGEIDAKLKQSSSGPI 62
           + +  SDG    + H      EC+ C++ F +A+ALGGHM +H   +   K +QSS+ P 
Sbjct: 11  ISENPSDGEDQGATHVTSRSYECNFCRRGFSNAQALGGHMNIHRKDKAKLKQQQSSNQP- 70

Query: 63  STDLRWVVPSAIAEGSSRDRNRGK---------------GKKVQELQLFSQKP--SKLKK 122
              L  V+P      S  +RN  K                   Q+L LF + P  S+  K
Sbjct: 71  --SLDKVIPPQDQTKSGEERNTPKWNWNVSQEEHASSRASHTRQQLPLFEESPTSSETLK 130

Query: 123 KQSDEKAGGQSSQHDNVDNELDLELRLGSNPKKSTP 136
            Q      G      +   +LDLELRLG  P+ S+P
Sbjct: 131 PQGQNTTDGALLSTRDSSLKLDLELRLGLEPQDSSP 163

BLAST of CSPI05G12510 vs. NCBI nr
Match: gi|449445407|ref|XP_004140464.1| (PREDICTED: probable transcriptional regulator RABBIT EARS [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 1

Query: 1   MNLEKQKSDGSHSTSWHECSICKKSFKSAKALGGHMRVHNTGEIDAKLKQSSSGPISTDL 60
           MNLEKQKS GSHSTSWHECSICKKSFKSAKALGGHMRVHNTGEIDAKLKQSS GPISTDL
Sbjct: 1   MNLEKQKSGGSHSTSWHECSICKKSFKSAKALGGHMRVHNTGEIDAKLKQSSLGPISTDL 60

Query: 61  RWVVPSAIAEGSSRDRNRGKGKKVQELQLFSQKPSKLKKKQSDEKAGGQSSQHDNVDNEL 120
           RWVVPSAIAEGSSRDRNRGKGKKVQELQLFSQKPSKLKKKQSDEKAGGQSSQHDNVDNEL
Sbjct: 61  RWVVPSAIAEGSSRDRNRGKGKKVQELQLFSQKPSKLKKKQSDEKAGGQSSQHDNVDNEL 120

Query: 121 DLELRLGSNPKKSTPTIFKFF 142
           DLELRLGSNPKKSTPTIFKFF
Sbjct: 121 DLELRLGSNPKKSTPTIFKFF 141

BLAST of CSPI05G12510 vs. NCBI nr
Match: gi|659130551|ref|XP_008465230.1| (PREDICTED: transcriptional regulator TAC1-like [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 5.3e-37
Identity = 98/150 (65.33%), Postives = 110/150 (73.33%), Query Frame = 1

Query: 1   MNLEKQKSDGSHSTSW-HECSICKKSFKSAKALGGHMRVHNTGEIDAKLK-QSSSGPIST 60
           MN  KQ S GS S SW +EC+ICK+SFKSAKALGGHM +H+  EID KLK QS+S  I T
Sbjct: 1   MNCGKQ-SGGSQSASWSYECTICKRSFKSAKALGGHMHIHSNEEIDTKLKLQSTSESIPT 60

Query: 61  DLRWVVPSAIAEGSSRDRNRGKGK-------KVQELQLFSQKPSKLKKKQSDEKAGGQSS 120
           DLRWVV SA AEG  RDRNRGKG        KV+EL LF +KPS LKK   ++   GQSS
Sbjct: 61  DLRWVVLSATAEGRGRDRNRGKGSKEQVRMGKVKELSLFGKKPSNLKKLFGEKT--GQSS 120

Query: 121 QHDNVDNELDLELRLGSNPKKSTPTIFKFF 142
           Q DNV +E+DLELRLGSNPKKST T FKFF
Sbjct: 121 QQDNVVSEVDLELRLGSNPKKSTLTTFKFF 147

BLAST of CSPI05G12510 vs. NCBI nr
Match: gi|823127365|ref|XP_012435280.1| (PREDICTED: transcriptional regulator TAC1-like [Gossypium raimondii])

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-07
Identity = 59/174 (33.91%), Postives = 85/174 (48.85%), Query Frame = 1

Query: 2   NLEKQKSD--GSHSTSWHECSICKKSFKSAKALGGHMRVHNTGEIDAKLKQSSSGPIST- 61
           N +K  SD  G+     ++C+ CK+ F +A+ALGGHM +H   +  AKLKQ S    +T 
Sbjct: 10  NPDKASSDEQGASPARSYDCTFCKRGFSNAQALGGHMNIHRRDK--AKLKQPSPTHETTA 69

Query: 62  -------DLRWVVPSAIAEGSSRDRNRGK------------------GKKVQELQLFSQK 121
                  D+  ++PS     SS  + R                    G ++++L LF +K
Sbjct: 70  TTQQSNFDISKIIPSYSHTPSSHGKWRWVLQDDGADARTDKTSDHIVGSQIRQLPLFDEK 129

Query: 122 PSKLKKK-QSDEKAG---GQSSQHDNVDNELDLELRLGSNPKKSTP--TIFKFF 142
           PSK  +  +S  + G   G SS    + +ELDLELRLG  P  S+P  T  KFF
Sbjct: 130 PSKSDQNPRSQVQEGLEKGFSSTQPPLGSELDLELRLGPEPHDSSPPKTTKKFF 181

BLAST of CSPI05G12510 vs. NCBI nr
Match: gi|950943037|ref|XP_014493724.1| (PREDICTED: transcriptional regulator TAC1-like [Vigna radiata var. radiata])

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 51/157 (32.48%), Postives = 73/157 (46.50%), Query Frame = 1

Query: 3   LEKQKSDGSHSTSWH------ECSICKKSFKSAKALGGHMRVHNTGEIDAKLKQSSSGPI 62
           + +  SDG    + H      EC+ C++ F +A+ALGGHM +H   +   K +QSS+ P 
Sbjct: 12  ISENPSDGEDQGATHVASRSYECNFCRRGFSNAQALGGHMNIHRKDKAKLKQQQSSNQP- 71

Query: 63  STDLRWVVPSAIAEGSSRDRNRGK---------------GKKVQELQLFSQKPSK---LK 122
              L  VVP      S  +RN  K                   Q+L LF + P+    LK
Sbjct: 72  --SLDKVVPPQDQTKSGEERNTPKWNWNVSQEEHASSRASHTRQQLPLFEESPTSSETLK 131

Query: 123 KKQSDEKAGGQSSQHDNVDNELDLELRLGSNPKKSTP 136
            +  +   G  SS  D+   +LDLELRLG  P+ S+P
Sbjct: 132 PQGQNTTEGALSSTRDS-SLKLDLELRLGLEPQDSSP 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KR10_CUCSA1.1e-7098.58Uncharacterized protein OS=Cucumis sativus GN=Csa_5G289630 PE=4 SV=1[more]
A0A0D2LXE8_GOSRA1.8e-0733.91Uncharacterized protein OS=Gossypium raimondii GN=B456_001G112700 PE=4 SV=1[more]
A0A0A0LXG2_CUCSA7.5e-0633.14Uncharacterized protein OS=Cucumis sativus GN=Csa_1G524710 PE=4 SV=1[more]
A0A0S3SD05_PHAAN9.7e-0630.77Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G203200 PE=... [more]
A0A0L9T7Z6_PHAAN9.7e-0630.77Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan238s005200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449445407|ref|XP_004140464.1|1.6e-7098.58PREDICTED: probable transcriptional regulator RABBIT EARS [Cucumis sativus][more]
gi|659130551|ref|XP_008465230.1|5.3e-3765.33PREDICTED: transcriptional regulator TAC1-like [Cucumis melo][more]
gi|823127365|ref|XP_012435280.1|2.5e-0733.91PREDICTED: transcriptional regulator TAC1-like [Gossypium raimondii][more]
gi|950943037|ref|XP_014493724.1|2.8e-0632.48PREDICTED: transcriptional regulator TAC1-like [Vigna radiata var. radiata][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007087Zinc finger, C2H2
IPR013087Znf_C2H2_type
IPR015880Zinc finger, C2H2-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G12510.1CSPI05G12510.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PFAMPF13912zf-C2H2_6coord: 17..39
score: 1.
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 19..39
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 17..44
score: 10
IPR013087Zinc finger C2H2-type/integrase DNA-binding domainGENE3DG3DSA:3.30.160.60coord: 17..43
score: 1.
IPR015880Zinc finger, C2H2-likeSMARTSM00355c2h2final6coord: 17..39
score: 6.
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 15..41
score: 1.2

The following gene(s) are paralogous to this gene:

None