CSPI05G12410 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G12410
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	SEC12-like protein 2
Location	Chr5 : 11599671 .. 11601989 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATGAGGTTTTTATCTCATGCAAATTCTCTTTGACCAACAATGGGGATATGGTTTTATACACTGCTTCAGTGACTGGTAATGATATTTCTTCTGACTTGTGTTTGCCCTATAATCGTAGTGTTATCTAATTTTGTTGAGGATTGTGATAGGCAAAGGTGGAAGCATTGTATCTTGGAATGCAACCACTTGGAGGAGGGTAGCCTCAAAGCTCATAACTCGTGATAATATTACTGCATTCAATGTTTCATCTAGTGGAAGACTCCTTGCCTGGTACTAAAATATGTGAATTTTTTCCTCTTGCAAGGATCTGCTATTATTTTGACACTTGAACTTAGTAGTACGCCGCCCATGCTTAGAAAATGTCAATACCATTAAATGGGAGGTGAAATTCCAGCTACTTTGGTTTTCTAATTTTGTAGGCATTTACTGGGTGCACTGTTAGATTTCTTATCCGAACCCAATGATTGAGAGAATAAGATGTATTAGGTAGTTGGAAGAAAACTGTGGACTTTACTTTTAGGCTTTCAATAGGTTCGTGCCAACTTATCTCATCTCACCTTTTTTGTTTAGCTCAAGGTTAATTATCTATGACTGTTTGTCCATGAGGTTAATTATCTCATTTGCAAAGGATATATTGCAAATGAGATGTAGTTGAAGACTAAAAAAATATTATTCTCATGTTTGTTTGAACTTATGCCTTTGCTATTAATTATTCTATTCGAAATATCGGGATGACATTTTCTTTTTGTTACCTTGTTTTCTAGGCTAGTCTTCAATATGCGTTACTTTTGTGTCTGAATGGGTTTAGTACTTCAATACATTTAATAATGGTTTCTGCTTCATTATTGGTGTAGTGGTACAACTCAGGGAGACGTTCTGATCATGAATTCAACCAGCTTGCAAGTTCGAAAGATAGTTAAAAAGGCACACCTTGGTTTTGTAACGGCATTGAGCTTTTCCCCCGATTCAAGGTTTTAATAGAGCATCTCTGTTTTGCATAATTTGATATCACTGTAATAAAATATCAATTATGAACATTATTATTTTTTTTGAATCCAGAGCTCTGGTTTCTGCATCAATGGACTCCAGTGCTAGGGTGACTGTAATTGAGGAGGAGCAGAAAAAAGGTAGTCGTATCCTTGTTTTTTTGTCTAATAATTCAAACTTATATCGTCACATGCCATGATCAGTTGTCAATTTTCACCACACTGCACTTGACCTATAAAAACGAGATAAAGAATAGATAAATAATCTTAAACTGTCATTCGTTTCGAAATTGCCCCTATACCTTTTAAACTTCATAAATGCTTCAAAACTACCACCGGAACATAAGTATTTTGAAATTCCAAACAGATGTTGGGAATTAAATTGAGTTGTGGTGACCTAAAATTTATCCAATGATTCAAATTTTCAATCCAGGTCATTGCTACACCACATAACGTCTTACATCTGTCTAAAACTCCAAAATATATACAGTAAATTCAGTTTTAATTGGTGAAGTCGACACTTTTGGAAGTATAGGGATGTCTTTGAAACAAAGAGCAAAGTTTAAGGGTGAAGATGTAACGATACACCACCGTCACTAATAGTAAGCTTAGGTTTAAAACAGCATGATGCTTCAATTTTGATAGAAAACAGCAAAATATTACTCTGGGCTTTTAATCGAAGGGTATGTTGATTGTTTGGTGTCATGGTTGTTAATGGTGGAAGATGTGATGTGCTTGATGCAACCTGATCAGAACAATTTTTTTGACATTTATACTTGAAGGGAAATTATTGTTATTTTATTTTTTAAAAGTTCAATGATATGCAGTATAGGGACTCGTTTAATGACTTTTGTTCTTTTTAAAATATAATTAGTTGATATTTAATTCATGTAGTATATAGACTTGTTTTATCAGAATAAAAGGCTCACCGTTTTTTAACTTTACAGTCTTTTTAGCCAATGGAACCCTTTGGTTATCACTAAATTAGCATGGATTTGGGTGCAGGAATGAACATGTGGATCATCATATTCATCTTGCTAATTGCTATTGCTACTTATTTTTTTCATTCAACAATCCTGAATTTCACATAAGTTTGAGGTTCCCACCCTTTTTAATGGTTGAAATGAAGGTGGGAATATAGAGGAACTCAGAGCCTAACAGTTTGAATTGAAACCGTTTCTTTTTCTTTTACTTTCCCTTGACAATGACATTAGTTATATTCAAATTCAAATAAGTAGTATCCCAATTCTATGTTACATGTAAAATTCCCACATTTTTGTTAGTGTTCAAAATTGAAATCTTTTGACATTTACTTTGTAATTTAGTTGGAT

mRNA sequence

ATGGTTTTATACACTGCTTCAGTGACTGGCAAAGGTGGAAGCATTGTATCTTGGAATGCAACCACTTGGAGGAGGGTAGCCTCAAAGCTCATAACTCGTGATAATATTACTGCATTCAATGTTTCATCTAGTGGAAGACTCCTTGCCTGTGGTACAACTCAGGGAGACGTTCTGATCATGAATTCAACCAGCTTGCAAGTTCGAAAGATAGTTAAAAAGGCACACCTTGGTTTTGTAACGGCATTGAGCTTTTCCCCCGATTCAAGAGCTCTGGTTTCTGCATCAATGGACTCCAGTGCTAGGGTGACTGTAATTGAGGAGGAGCAGAAAAAAGGAATGAACATGTGGATCATCATATTCATCTTGCTAATTGCTATTGCTACTTATTTTTTTCATTCAACAATCCTGAATTTCACATAA

Coding sequence (CDS)

ATGGTTTTATACACTGCTTCAGTGACTGGCAAAGGTGGAAGCATTGTATCTTGGAATGCAACCACTTGGAGGAGGGTAGCCTCAAAGCTCATAACTCGTGATAATATTACTGCATTCAATGTTTCATCTAGTGGAAGACTCCTTGCCTGTGGTACAACTCAGGGAGACGTTCTGATCATGAATTCAACCAGCTTGCAAGTTCGAAAGATAGTTAAAAAGGCACACCTTGGTTTTGTAACGGCATTGAGCTTTTCCCCCGATTCAAGAGCTCTGGTTTCTGCATCAATGGACTCCAGTGCTAGGGTGACTGTAATTGAGGAGGAGCAGAAAAAAGGAATGAACATGTGGATCATCATATTCATCTTGCTAATTGCTATTGCTACTTATTTTTTTCATTCAACAATCCTGAATTTCACATAA

Homology

[Close]

BLAST of CSPI05G12410 vs. Swiss-Prot
Match: STLP2_ARATH (SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4)

HSP 1 Score: 121.7 bits (304), Expect = 5.9e-27
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = 1


Query: 2   VLYTASVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIMN 61
           VLY A+ T +GGSI++ +   W+R  SK I +++I+AFNVS+ G+LLA GT +GDVLI+ 
Sbjct: 254 VLYIAANTERGGSIITCDTKLWKRKWSKPIKKNSISAFNVSADGKLLAIGTLEGDVLILE 313

Query: 62  STSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKK 112
           ST +Q  ++VKKAHLG VTAL+FSPDSR LVS S DS AR+T+IE++  K
Sbjct: 314 STRMQTIQVVKKAHLGLVTALTFSPDSRGLVSVSFDSRARLTMIEQKGDK 363

[Close]

BLAST of CSPI05G12410 vs. TrEMBL
Match: A0A0A0KMM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G286070 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.7e-52
Identity = 111/119 (93.28%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1   MVLYTASVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM 60
           MVLYTA+VTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM
Sbjct: 18  MVLYTAAVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM 77

Query: 61  NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGSRILVFL 120
           NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKG  + + +
Sbjct: 78  NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGMNMWIII 136

[Close]

BLAST of CSPI05G12410 vs. TrEMBL
Match: W9QTE8_9ROSA (SEC12-like protein 2 OS=Morus notabilis GN=L484_022925 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.1e-35
Identity = 72/110 (65.45%), Postives = 94/110 (85.45%), Query Frame = 1


Query: 1   MVLYTASVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM 60
           +VLYT SVTGKGGSI +WN TTW+R++SK + RD I AF+VS+ G+ LACGTT+GDV+I+
Sbjct: 317 LVLYTVSVTGKGGSIATWNTTTWKRISSKSVVRDTILAFDVSADGKFLACGTTEGDVMII 376

Query: 61  NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQK 111
           NSTS++  +++KKAHLGFVTAL FSPDS A  SAS+DSSARVT+I+E ++
Sbjct: 377 NSTSMRTHQVIKKAHLGFVTALRFSPDSSAFASASLDSSARVTIIQEAKE 426

[Close]

BLAST of CSPI05G12410 vs. TrEMBL
Match: I1KM58_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G218700 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.3e-33
Identity = 70/119 (58.82%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 1   MVLYTASVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM 60
           ++LY A++T KGGSI++WN  TW R+ASK I RD I+AFNVS+ G+ LACGT  GD++++
Sbjct: 264 LILYIAAMTDKGGSILTWNTQTWERMASKHIIRDPISAFNVSADGKFLACGTPSGDIVVV 323

Query: 61  NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGSRILVFL 120
           NST++Q+  ++KKAHLG VTAL+FSPDSRA+ S SMDSSARVT+IEE++  G  + + L
Sbjct: 324 NSTNMQIHTMIKKAHLGIVTALAFSPDSRAVASVSMDSSARVTIIEEKKTNGLSLWIAL 382

[Close]

BLAST of CSPI05G12410 vs. TrEMBL
Match: A0A0B2S8J7_GLYSO (SEC12-like protein 2 OS=Glycine soja GN=glysoja_007546 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.3e-33
Identity = 70/119 (58.82%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 1   MVLYTASVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM 60
           ++LY A++T KGGSI++WN  TW R+ASK I RD I+AFNVS+ G+ LACGT  GD++++
Sbjct: 264 LILYIAAMTDKGGSILTWNTQTWERMASKHIIRDPISAFNVSADGKFLACGTPSGDIVVV 323

Query: 61  NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGSRILVFL 120
           NST++Q+  ++KKAHLG VTAL+FSPDSRA+ S SMDSSARVT+IEE++  G  + + L
Sbjct: 324 NSTNMQIHTMIKKAHLGIVTALAFSPDSRAVASVSMDSSARVTIIEEKKTNGLSLWIAL 382

[Close]

BLAST of CSPI05G12410 vs. TrEMBL
Match: M5XFH7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006854mg PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.3e-33
Identity = 74/119 (62.18%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 4   YTASVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIMNST 63
           Y   +  K GSIV+WN TTW+R+ SK I RD I AF+VS+ G+LLACGTTQGD++I+NST
Sbjct: 149 YILYIADKSGSIVTWNTTTWKRIGSKTIARDIICAFDVSADGKLLACGTTQGDLVIVNST 208

Query: 64  SLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGSR---ILVFL 120
            +Q++K+VKKAHLGFVTALSFS DSRAL SAS+DSSARV+ +E+E+K G     I++F+
Sbjct: 209 RMQIQKVVKKAHLGFVTALSFSRDSRALASASLDSSARVSTLEDEKKTGGLNIWIIIFI 267

[Close]

BLAST of CSPI05G12410 vs. TAIR10
Match: AT5G50550.1 (AT5G50550.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 1.7e-32
Identity = 70/111 (63.06%), Postives = 92/111 (82.88%), Query Frame = 1


Query: 2   VLYTASVTGKGGSIVSWNATTWRRVASKLITRDN-ITAFNVSSSGRLLACGTTQGDVLIM 61
           VLY A+ T +GGSI++W+ T+WRR +SKLI R+N I+AFNVS+ G+LLA GT +GDVLI+
Sbjct: 243 VLYVAANTQRGGSIITWDTTSWRRRSSKLIKRNNSISAFNVSADGKLLAVGTLEGDVLII 302

Query: 62  NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKK 112
           +ST +Q  +IVKKAHLG VTAL+FSPDSR LVS S DS AR+TVI+++ +K
Sbjct: 303 DSTKMQTNQIVKKAHLGLVTALTFSPDSRCLVSVSFDSRARLTVIKQKGEK 353

[Close]

BLAST of CSPI05G12410 vs. TAIR10
Match: AT5G50650.1 (AT5G50650.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 1.7e-32
Identity = 70/111 (63.06%), Postives = 92/111 (82.88%), Query Frame = 1


Query: 2   VLYTASVTGKGGSIVSWNATTWRRVASKLITRDN-ITAFNVSSSGRLLACGTTQGDVLIM 61
           VLY A+ T +GGSI++W+ T+WRR +SKLI R+N I+AFNVS+ G+LLA GT +GDVLI+
Sbjct: 243 VLYVAANTQRGGSIITWDTTSWRRRSSKLIKRNNSISAFNVSADGKLLAVGTLEGDVLII 302

Query: 62  NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKK 112
           +ST +Q  +IVKKAHLG VTAL+FSPDSR LVS S DS AR+TVI+++ +K
Sbjct: 303 DSTKMQTNQIVKKAHLGLVTALTFSPDSRCLVSVSFDSRARLTVIKQKGEK 353

[Close]

BLAST of CSPI05G12410 vs. TAIR10
Match: AT2G01470.1 (AT2G01470.1 SEC12P-like 2 protein)

HSP 1 Score: 121.7 bits (304), Expect = 3.3e-28
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = 1


Query: 2   VLYTASVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIMN 61
           VLY A+ T +GGSI++ +   W+R  SK I +++I+AFNVS+ G+LLA GT +GDVLI+ 
Sbjct: 254 VLYIAANTERGGSIITCDTKLWKRKWSKPIKKNSISAFNVSADGKLLAIGTLEGDVLILE 313

Query: 62  STSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKK 112
           ST +Q  ++VKKAHLG VTAL+FSPDSR LVS S DS AR+T+IE++  K
Sbjct: 314 STRMQTIQVVKKAHLGLVTALTFSPDSRGLVSVSFDSRARLTMIEQKGDK 363

[Close]

BLAST of CSPI05G12410 vs. NCBI nr
Match: gi|449445340|ref|XP_004140431.1| (PREDICTED: SEC12-like protein 2 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 2.4e-52
Identity = 111/119 (93.28%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1   MVLYTASVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM 60
           MVLYTA+VTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM
Sbjct: 259 MVLYTAAVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM 318

Query: 61  NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGSRILVFL 120
           NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKG  + + +
Sbjct: 319 NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGMNMWIII 377

[Close]

BLAST of CSPI05G12410 vs. NCBI nr
Match: gi|700195666|gb|KGN50843.1| (hypothetical protein Csa_5G286070 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 2.4e-52
Identity = 111/119 (93.28%), Postives = 115/119 (96.64%), Query Frame = 1


Query: 1   MVLYTASVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM 60
           MVLYTA+VTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM
Sbjct: 18  MVLYTAAVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM 77

Query: 61  NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGSRILVFL 120
           NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKG  + + +
Sbjct: 78  NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGMNMWIII 136

[Close]

BLAST of CSPI05G12410 vs. NCBI nr
Match: gi|659109584|ref|XP_008454782.1| (PREDICTED: SEC12-like protein 2 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 5.0e-50
Identity = 106/119 (89.08%), Postives = 113/119 (94.96%), Query Frame = 1


Query: 1   MVLYTASVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM 60
           M+LYTA+VTGKGGSIVSWNATTWR VASKLITRDNITAFNVS+SGRLLACGTTQGDVLIM
Sbjct: 259 MILYTAAVTGKGGSIVSWNATTWRSVASKLITRDNITAFNVSASGRLLACGTTQGDVLIM 318

Query: 61  NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGSRILVFL 120
           NSTSL+V KIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKG  + + +
Sbjct: 319 NSTSLRVLKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGMNLWIII 377

[Close]

BLAST of CSPI05G12410 vs. NCBI nr
Match: gi|1009154977|ref|XP_015895467.1| (PREDICTED: SEC12-like protein 2 [Ziziphus jujuba])

HSP 1 Score: 156.0 bits (393), Expect = 4.5e-35
Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 1


Query: 2   VLYTASVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIMN 61
           VLY A+VTGKGGSIV WN TTW R+ SK I RD I+AF+VS+ G+LLACGTTQGDV ++N
Sbjct: 262 VLYIAAVTGKGGSIVKWNTTTWNRIVSKPIVRDAISAFDVSADGKLLACGTTQGDVWMVN 321

Query: 62  STSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQKKGSRIL 117
           S S++++++V+KAHLG VTAL FS DSRAL SASMDSS RVT IEEE+K G   L
Sbjct: 322 SASMRIQQVVRKAHLGLVTALRFSNDSRALASASMDSSVRVTTIEEEKKTGGSSL 376

[Close]

BLAST of CSPI05G12410 vs. NCBI nr
Match: gi|703087782|ref|XP_010093363.1| (SEC12-like protein 2 [Morus notabilis])

HSP 1 Score: 155.6 bits (392), Expect = 5.9e-35
Identity = 72/110 (65.45%), Postives = 94/110 (85.45%), Query Frame = 1


Query: 1   MVLYTASVTGKGGSIVSWNATTWRRVASKLITRDNITAFNVSSSGRLLACGTTQGDVLIM 60
           +VLYT SVTGKGGSI +WN TTW+R++SK + RD I AF+VS+ G+ LACGTT+GDV+I+
Sbjct: 317 LVLYTVSVTGKGGSIATWNTTTWKRISSKSVVRDTILAFDVSADGKFLACGTTEGDVMII 376

Query: 61  NSTSLQVRKIVKKAHLGFVTALSFSPDSRALVSASMDSSARVTVIEEEQK 111
           NSTS++  +++KKAHLGFVTAL FSPDS A  SAS+DSSARVT+I+E ++
Sbjct: 377 NSTSMRTHQVIKKAHLGFVTALRFSPDSSAFASASLDSSARVTIIQEAKE 426

The following BLAST results are available for this feature:

BLAST of CSPI05G12410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
STLP2_ARATH	5.9e-27	57.27	SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4	[more]

BLAST of CSPI05G12410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMM7_CUCSA	1.7e-52	93.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G286070 PE=4 SV=1	[more]
W9QTE8_9ROSA	4.1e-35	65.45	SEC12-like protein 2 OS=Morus notabilis GN=L484_022925 PE=4 SV=1	[more]
I1KM58_SOYBN	2.3e-33	58.82	Uncharacterized protein OS=Glycine max GN=GLYMA_07G218700 PE=4 SV=1	[more]
A0A0B2S8J7_GLYSO	2.3e-33	58.82	SEC12-like protein 2 OS=Glycine soja GN=glysoja_007546 PE=4 SV=1	[more]
M5XFH7_PRUPE	2.3e-33	62.18	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006854mg PE=4 SV=1	[more]

BLAST of CSPI05G12410 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50550.1	1.7e-32	63.06	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G50650.1	1.7e-32	63.06	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G01470.1	3.3e-28	57.27	SEC12P-like 2 protein	[more]

BLAST of CSPI05G12410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445340\|ref\|XP_004140431.1\|	2.4e-52	93.28	PREDICTED: SEC12-like protein 2 [Cucumis sativus]	[more]
gi\|700195666\|gb\|KGN50843.1\|	2.4e-52	93.28	hypothetical protein Csa_5G286070 [Cucumis sativus]	[more]
gi\|659109584\|ref\|XP_008454782.1\|	5.0e-50	89.08	PREDICTED: SEC12-like protein 2 [Cucumis melo]	[more]
gi\|1009154977\|ref\|XP_015895467.1\|	4.5e-35	67.83	PREDICTED: SEC12-like protein 2 [Ziziphus jujuba]	[more]
gi\|703087782\|ref\|XP_010093363.1\|	5.9e-35	65.45	SEC12-like protein 2 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom
IPR001680	WD40_repeat
IPR011047	Quinoprotein_ADH-like_supfam
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0008150	biological_process
biological_process	GO:0009306	protein secretion
biological_process	GO:0003400	regulation of COPII vesicle coating
biological_process	GO:0065009	regulation of molecular function
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0005090	Sar guanyl-nucleotide exchange factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G12410.2	CSPI05G12410.2	mRNA
CSPI05G12410.1	CSPI05G12410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 73..102 score: 8.
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 22..61 score: 44.0coord: 64..104 score: 0
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 72..102 score: 9
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	unknown	SSF50998	Quinoprotein alcohol dehydrogenase-like	coord: 6..102 score: 1.1
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 4..109 score: 7.3
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 1..113 score: 9
None	No IPR available	PANTHER	PTHR23284	PROLACTIN REGULATORY ELEMENT BINDING PROTEIN	coord: 6..131 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G12410	Cla016879	Watermelon (97103) v1	cpiwmB445
CSPI05G12410	Csa5G286070	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G12410	MELO3C018343	Melon (DHL92) v3.5.1	cpimeB367
CSPI05G12410	ClCG11G001240	Watermelon (Charleston Gray)	cpiwcgB373
CSPI05G12410	Lsi11G001340	Bottle gourd (USVL1VR-Ls)	cpilsiB342
CSPI05G12410	CsaV3_5G013310	Cucumber (Chinese Long) v3	cpicucB299
CSPI05G12410	Cla97C11G207630	Watermelon (97103) v2	cpiwmbB377
CSPI05G12410	Bhi07G000112	Wax gourd	cpiwgoB509
CSPI05G12410	CmaCh04G000280	Cucurbita maxima (Rimu)	cmacpiB772
CSPI05G12410	CmoCh04G000280	Cucurbita moschata (Rifu)	cmocpiB760
CSPI05G12410	Cp4.1LG01g06620	Cucurbita pepo (Zucchini)	cpecpiB456
CSPI05G12410	CsGy5G010070	Cucumber (Gy14) v2	cgybcpiB235

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G12410	Cucurbita maxima (Rimu)	cmacpiB751
CSPI05G12410	Melon (DHL92) v3.5.1	cpimeB372
CSPI05G12410	Cucurbita pepo (Zucchini)	cpecpiB432
CSPI05G12410	Melon (DHL92) v3.6.1	cpimedB362