CSPI05G12370 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G12370
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Vascular plant one zinc finger protein
Location	Chr5 : 11554730 .. 11555148 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCAATATTGTGTCATGGAGGAATTGACTTTAAGGATGGTCCTTTGTTTGTTGCTCTTCAAGCAAAGACACAAGCCAAAGAAGTTGGAATACCCATATGTGATGGGGCTACAACAAGGAATGCTCTAGGTAAAACACCTTTATGTTGCTTTCTAACTTTTTCACATTTTCCTGATTTTTCTTTTATTATAATTACTTGTTTTTCATGGATGCTCTTTATTCTGTCCTAGTGAGTTGTATCAATTAGTGTGTATTTATAGTGATTCTTTTCATTGTTGCAGAGCTTTTTGATATTACATTTCTTGAGGGGGAGACAGTCAGGGAATGCCTCTACTTCGACAAGTCTAGACATTGCAGTTTTACTATTCAATTGAGTAACATATTAGTGGGAAAAGGGATTGCAAGCTTTAATATT

mRNA sequence

ATGATTCCAATATTGTGTCATGGAGGAATTGACTTTAAGGATGGTCCTTTGTTTGTTGCTCTTCAAGCAAAGACACAAGCCAAAGAAGTTGGAATACCCATATGTGATGGGGCTACAACAAGGAATGCTCTAGAGCTTTTTGATATTACATTTCTTGAGGGGGAGACAGTCAGGGAATGCCTCTACTTCGACAAGTCTAGACATTGCAGTTTTACTATTCAATTGAGTAACATATTAGTGGGAAAAGGGATTGCAAGCTTTAATATT

Coding sequence (CDS)

ATGATTCCAATATTGTGTCATGGAGGAATTGACTTTAAGGATGGTCCTTTGTTTGTTGCTCTTCAAGCAAAGACACAAGCCAAAGAAGTTGGAATACCCATATGTGATGGGGCTACAACAAGGAATGCTCTAGAGCTTTTTGATATTACATTTCTTGAGGGGGAGACAGTCAGGGAATGCCTCTACTTCGACAAGTCTAGACATTGCAGTTTTACTATTCAATTGAGTAACATATTAGTGGGAAAAGGGATTGCAAGCTTTAATATT

Homology

[Close]

BLAST of CSPI05G12370 vs. Swiss-Prot
Match: VOZ1_ARATH (Transcription factor VOZ1 OS=Arabidopsis thaliana GN=VOZ1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-14
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 1   MIPILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGET 60
           M P++  GGI  KDG LF AL AK   K+VGIP C+GA T     NA ELFD+T LE ET
Sbjct: 252 MNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPWNAPELFDLTVLESET 311

Query: 61  VRECLYFDKSR 68
           +RE L+FDK R
Sbjct: 312 LREWLFFDKPR 322

[Close]

BLAST of CSPI05G12370 vs. Swiss-Prot
Match: VOZ2_ARATH (Transcription factor VOZ2 OS=Arabidopsis thaliana GN=VOZ2 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 8.7e-14
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 1


Query: 3   PILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGETVR 62
           P+L  GGI  KD  L  AL+AKTQ K VGIP+C+GA       NA ELF +  +EGET+R
Sbjct: 267 PVLRPGGISLKDNLLIDALRAKTQGKNVGIPVCEGAVNTKCPWNAAELFHLELVEGETIR 326

Query: 63  ECLYFDKSR 68
           E L+FDK R
Sbjct: 327 EWLFFDKPR 335

[Close]

BLAST of CSPI05G12370 vs. TrEMBL
Match: M0SP17_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.5e-16
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1


Query: 1   MIPILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGET 60
           M P+L  GGID KDGPLF AL A+T+ K VGIP+C+GA T     NA ELFD++ LEGE+
Sbjct: 375 MTPVLRPGGIDLKDGPLFAALNARTEGKNVGIPVCEGAATAKSPWNAPELFDLSVLEGES 434

Query: 61  VRECLYFDKSR 68
           +RE L+FDK R
Sbjct: 435 LREWLFFDKPR 445

[Close]

BLAST of CSPI05G12370 vs. TrEMBL
Match: A0A151SVF4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_014199 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.5e-16
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 1   MIPILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGET 60
           M PIL  GGI  KDGPLF A+ AKTQ KEVGIP C+GA +     NA E FD++FLEGET
Sbjct: 284 MTPILRPGGIGVKDGPLFAAVLAKTQGKEVGIPSCEGAASTKSPWNAPEFFDLSFLEGET 343

Query: 61  VRECLYFDKSR 68
           VRE L+FDK R
Sbjct: 344 VREWLFFDKPR 354

[Close]

BLAST of CSPI05G12370 vs. TrEMBL
Match: A0A0K9NP50_ZOSMR (Vascular plant one zinc finger protein OS=Zostera marina GN=ZOSMA_76G00860 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.5e-16
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 1   MIPILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGET 60
           M P+L  GGID KDGPLF AL AKTQ K VGIP C+GA T     NA ELFD++ LEGE+
Sbjct: 330 MTPVLRPGGIDLKDGPLFAALTAKTQEKNVGIPECEGAATAKSPWNAPELFDLSVLEGES 389

Query: 61  VRECLYFDKSR 68
           +RE L+FDK R
Sbjct: 390 IREWLFFDKPR 400

[Close]

BLAST of CSPI05G12370 vs. TrEMBL
Match: A0A0B2S4H9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_042253 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 1   MIPILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGET 60
           M PIL  GGI  KDGPLF A+ AKTQ KEVGIP C+GA +     NA E FD++FLEGET
Sbjct: 280 MTPILRPGGIGVKDGPLFDAVLAKTQGKEVGIPSCEGAASTKSPWNAPEFFDLSFLEGET 339

Query: 61  VRECLYFDKSR 68
           VRE L+FDK R
Sbjct: 340 VREWLFFDKPR 350

[Close]

BLAST of CSPI05G12370 vs. TrEMBL
Match: K7LUC5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G120100 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 1   MIPILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGET 60
           M PIL  GGI  KDGPLF A+ AKTQ KEVGIP C+GA +     NA E FD++FLEGET
Sbjct: 280 MTPILRPGGIGVKDGPLFDAVLAKTQGKEVGIPSCEGAASTKSPWNAPEFFDLSFLEGET 339

Query: 61  VRECLYFDKSR 68
           VRE L+FDK R
Sbjct: 340 VREWLFFDKPR 350

[Close]

BLAST of CSPI05G12370 vs. TAIR10
Match: AT1G28520.1 (AT1G28520.1 vascular plant one zinc finger protein)

HSP 1 Score: 79.7 bits (195), Expect = 9.9e-16
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 1   MIPILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGET 60
           M P++  GGI  KDG LF AL AK   K+VGIP C+GA T     NA ELFD+T LE ET
Sbjct: 252 MNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPWNAPELFDLTVLESET 311

Query: 61  VRECLYFDKSR 68
           +RE L+FDK R
Sbjct: 312 LREWLFFDKPR 322

[Close]

BLAST of CSPI05G12370 vs. TAIR10
Match: AT2G42400.1 (AT2G42400.1 vascular plant one zinc finger protein 2)

HSP 1 Score: 77.4 bits (189), Expect = 4.9e-15
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 1


Query: 3   PILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGETVR 62
           P+L  GGI  KD  L  AL+AKTQ K VGIP+C+GA       NA ELF +  +EGET+R
Sbjct: 267 PVLRPGGISLKDNLLIDALRAKTQGKNVGIPVCEGAVNTKCPWNAAELFHLELVEGETIR 326

Query: 63  ECLYFDKSR 68
           E L+FDK R
Sbjct: 327 EWLFFDKPR 335

[Close]

BLAST of CSPI05G12370 vs. NCBI nr
Match: gi|659111849|ref|XP_008455940.1| (PREDICTED: transcription factor VOZ1-like [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-22
Identity = 57/71 (80.28%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1   MIPILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGET 60
           MIPIL  GGI FKDGPLF ALQAKTQAKEVGIPICDGA TR    NA ELFD+TFLEGET
Sbjct: 274 MIPILRPGGIGFKDGPLFAALQAKTQAKEVGIPICDGAATRKSPWNAPELFDLTFLEGET 333

Query: 61  VRECLYFDKSR 68
           +RE LYFDK R
Sbjct: 334 IREWLYFDKPR 344

[Close]

BLAST of CSPI05G12370 vs. NCBI nr
Match: gi|778673382|ref|XP_011649982.1| (PREDICTED: transcription factor VOZ1-like [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-21
Identity = 56/71 (78.87%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 1   MIPILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGET 60
           MIPIL  GGI FKDGPLF ALQ KTQAKEVGIPIC GA TR    NA ELFDITFLEGET
Sbjct: 274 MIPILRPGGIGFKDGPLFAALQVKTQAKEVGIPICAGAATRKSPWNAPELFDITFLEGET 333

Query: 61  VRECLYFDKSR 68
           +RE LYFDK R
Sbjct: 334 IREWLYFDKPR 344

[Close]

BLAST of CSPI05G12370 vs. NCBI nr
Match: gi|743795197|ref|XP_010924398.1| (PREDICTED: transcription factor VOZ1 isoform X1 [Elaeis guineensis])

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-16
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 1   MIPILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGET 60
           M P+L  GGID KDGPLF AL AKTQ K VGIP+C GA T     NA ELFD++ LEGE+
Sbjct: 270 MTPVLRPGGIDLKDGPLFAALCAKTQGKNVGIPVCQGAATAKSPWNAPELFDLSVLEGES 329

Query: 61  VRECLYFDKSR 68
           +RE L+FDK R
Sbjct: 330 LREWLFFDKPR 340

[Close]

BLAST of CSPI05G12370 vs. NCBI nr
Match: gi|720014037|ref|XP_010260370.1| (PREDICTED: transcription factor VOZ1 [Nelumbo nucifera])

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-16
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 1   MIPILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGET 60
           M P+L  GGI  KDGPLF AL AKTQ K+VGIP C+GA T     NA ELFD++ LEGET
Sbjct: 255 MTPVLRPGGIGLKDGPLFAALSAKTQGKDVGIPECEGAATTKSPWNAPELFDLSVLEGET 314

Query: 61  VRECLYFDKSR 68
           +RE L+FDK R
Sbjct: 315 IREWLFFDKPR 325

[Close]

BLAST of CSPI05G12370 vs. NCBI nr
Match: gi|743795201|ref|XP_010924399.1| (PREDICTED: transcription factor VOZ1 isoform X2 [Elaeis guineensis])

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-16
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 1   MIPILCHGGIDFKDGPLFVALQAKTQAKEVGIPICDGATTR----NALELFDITFLEGET 60
           M P+L  GGID KDGPLF AL AKTQ K VGIP+C GA T     NA ELFD++ LEGE+
Sbjct: 266 MTPVLRPGGIDLKDGPLFAALCAKTQGKNVGIPVCQGAATAKSPWNAPELFDLSVLEGES 325

Query: 61  VRECLYFDKSR 68
           +RE L+FDK R
Sbjct: 326 LREWLFFDKPR 336

The following BLAST results are available for this feature:

BLAST of CSPI05G12370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VOZ1_ARATH	1.8e-14	57.75	Transcription factor VOZ1 OS=Arabidopsis thaliana GN=VOZ1 PE=1 SV=1	[more]
VOZ2_ARATH	8.7e-14	55.07	Transcription factor VOZ2 OS=Arabidopsis thaliana GN=VOZ2 PE=1 SV=2	[more]

BLAST of CSPI05G12370 vs. TrEMBL


Match Name	E-value	Identity	Description
M0SP17_MUSAM	6.5e-16	60.56	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A151SVF4_CAJCA	6.5e-16	64.79	Uncharacterized protein OS=Cajanus cajan GN=KK1_014199 PE=4 SV=1	[more]
A0A0K9NP50_ZOSMR	6.5e-16	63.38	Vascular plant one zinc finger protein OS=Zostera marina GN=ZOSMA_76G00860 PE=4 ...	[more]
A0A0B2S4H9_GLYSO	1.4e-15	64.79	Uncharacterized protein OS=Glycine soja GN=glysoja_042253 PE=4 SV=1	[more]
K7LUC5_SOYBN	1.4e-15	64.79	Uncharacterized protein OS=Glycine max GN=GLYMA_12G120100 PE=4 SV=1	[more]

BLAST of CSPI05G12370 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G28520.1	9.9e-16	57.75	vascular plant one zinc finger protein	[more]
AT2G42400.1	4.9e-15	55.07	vascular plant one zinc finger protein 2	[more]

BLAST of CSPI05G12370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111849\|ref\|XP_008455940.1\|	2.3e-22	80.28	PREDICTED: transcription factor VOZ1-like [Cucumis melo]	[more]
gi\|778673382\|ref\|XP_011649982.1\|	3.3e-21	78.87	PREDICTED: transcription factor VOZ1-like [Cucumis sativus]	[more]
gi\|743795197\|ref\|XP_010924398.1\|	7.1e-16	63.38	PREDICTED: transcription factor VOZ1 isoform X1 [Elaeis guineensis]	[more]
gi\|720014037\|ref\|XP_010260370.1\|	7.1e-16	63.38	PREDICTED: transcription factor VOZ1 [Nelumbo nucifera]	[more]
gi\|743795201\|ref\|XP_010924399.1\|	7.1e-16	63.38	PREDICTED: transcription factor VOZ1 isoform X2 [Elaeis guineensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048574	long-day photoperiodism, flowering
biological_process	GO:0048518	positive regulation of biological process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G12370.1	CSPI05G12370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33873	FAMILY NOT NAMED	coord: 1..67 score: 1.1
None	No IPR available	PANTHER	PTHR33873:SF4	SUBFAMILY NOT NAMED	coord: 1..67 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G12370	Cucumber (Chinese Long) v3	cpicucB299
CSPI05G12370	Cucurbita maxima (Rimu)	cmacpiB751
CSPI05G12370	Cucurbita moschata (Rifu)	cmocpiB760
CSPI05G12370	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G12370	Melon (DHL92) v3.5.1	cpimeB372
CSPI05G12370	Melon (DHL92) v3.5.1	cpimeB367
CSPI05G12370	Cucurbita pepo (Zucchini)	cpecpiB432
CSPI05G12370	Cucurbita pepo (Zucchini)	cpecpiB456
CSPI05G12370	Melon (DHL92) v3.6.1	cpimedB362
CSPI05G12370	Cucumber (Gy14) v2	cgybcpiB235