CSPI05G10570 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G10570
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 8966089 .. 8966436 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATGCAGTTGCAAAGTCAGAAACAACTATGCAATTTGGAACCATTATTTAGGTCAAGTTGACGAACTCCAAGTTGCGGTGCAAGAGTTTATAACACAGAACCAAACACTTAAATCACAAAATATGGGGTTCAAGGCACAAAATCAAGTGATCATGGGGATGATAGAAGAGTCTAGTAGGCGGAATGATGTGCAATTCAGATCAACATTAAAAGGCCTTCATGCAGCAATCTGTAGCATCATTCCAGTACCTAAAGTTCCTCAAGAAATTGCAACACCCCTTACACAAAATTACACTGCAGTACGCAGCGAGGCAGAATCTTCTCGACCACCACCGCAAGCCTAA

mRNA sequence

ATGAGATGCAGTTGCAAAGTCAGAAACAACTATGCAATTTGGAACCATTATTTAGGTCAAGTTGACGAACTCCAAGTTGCGGTGCAAGAGTTTATAACACAGAACCAAACACTTAAATCACAAAATATGGGGTTCAAGGCACAAAATCAAGTGATCATGGGGATGATAGAAGAGTCTAGTAGGCGGAATGATGTGCAATTCAGATCAACATTAAAAGGCCTTCATGCAGCAATCTGTAGCATCATTCCAGTACCTAAAGTTCCTCAAGAAATTGCAACACCCCTTACACAAAATTACACTGCAGTACGCAGCGAGGCAGAATCTTCTCGACCACCACCGCAAGCCTAA

Coding sequence (CDS)

ATGAGATGCAGTTGCAAAGTCAGAAACAACTATGCAATTTGGAACCATTATTTAGGTCAAGTTGACGAACTCCAAGTTGCGGTGCAAGAGTTTATAACACAGAACCAAACACTTAAATCACAAAATATGGGGTTCAAGGCACAAAATCAAGTGATCATGGGGATGATAGAAGAGTCTAGTAGGCGGAATGATGTGCAATTCAGATCAACATTAAAAGGCCTTCATGCAGCAATCTGTAGCATCATTCCAGTACCTAAAGTTCCTCAAGAAATTGCAACACCCCTTACACAAAATTACACTGCAGTACGCAGCGAGGCAGAATCTTCTCGACCACCACCGCAAGCCTAA
Homology
[Close]
BLAST of CSPI05G10570 vs. TrEMBL
Match: A0A0A0KM31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G201330 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.1e-29
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 1 

Query: 43  MGFKAQNQVIMGMIEESSRRNDVQFRSTLKGLHAAICSIIPVPKVPQEIATPLTQNYTAV 102
           MGFKAQNQVIMGMIE+S RRNDVQFRSTLKGLHA ICSIIPVPKVP EIATPLTQNYTAV
Sbjct: 1   MGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATICSIIPVPKVPPEIATPLTQNYTAV 60

Query: 103 RSEAESSRPPPQA 116
           RSEAESSRPP QA
Sbjct: 61  RSEAESSRPPSQA 73

[Close]
BLAST of CSPI05G10570 vs. TrEMBL
Match: A0A0A0LKG8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G073050 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-09
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1 

Query: 57  EESSRRNDVQFRSTLKGLHAAICSIIPVPKVPQEIATPLTQNYTAVRSEAESSRPPP 114
           ++S+R N+VQFRSTL+ LHAA+CSIIPV + PQEIATPL+ N  AV +E ESS+  P
Sbjct: 5   KQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQLSP 61

[Close]
BLAST of CSPI05G10570 vs. TrEMBL
Match: A0A0A0KJB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G049020 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 1 

Query: 15  NHYLGQVDELQVAVQEFITQNQTLKSQNMGFKAQNQVIMGMIEESSRRNDVQFRSTLKGL 74
           +H+  Q++ L+  +QE I Q Q LK        QNQVIM M+++++R NDVQF S L+ L
Sbjct: 98  HHHQVQIEGLKAKMQELILQEQELK-------VQNQVIMEMVKQTTRWNDVQFTSALRYL 157

Query: 75  HAAICSIIPVP 86
           ++++CSIIP P
Sbjct: 158 YSSMCSIIPTP 161

[Close]
BLAST of CSPI05G10570 vs. NCBI nr
Match: gi|700195471|gb|KGN50648.1| (hypothetical protein Csa_5G201330 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 7.3e-29
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 1 

Query: 43  MGFKAQNQVIMGMIEESSRRNDVQFRSTLKGLHAAICSIIPVPKVPQEIATPLTQNYTAV 102
           MGFKAQNQVIMGMIE+S RRNDVQFRSTLKGLHA ICSIIPVPKVP EIATPLTQNYTAV
Sbjct: 1   MGFKAQNQVIMGMIEQSDRRNDVQFRSTLKGLHATICSIIPVPKVPPEIATPLTQNYTAV 60

Query: 103 RSEAESSRPPPQA 116
           RSEAESSRPP QA
Sbjct: 61  RSEAESSRPPSQA 73

[Close]
BLAST of CSPI05G10570 vs. NCBI nr
Match: gi|700206123|gb|KGN61242.1| (hypothetical protein Csa_2G073050 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-09
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1 

Query: 57  EESSRRNDVQFRSTLKGLHAAICSIIPVPKVPQEIATPLTQNYTAVRSEAESSRPPP 114
           ++S+R N+VQFRSTL+ LHAA+CSIIPV + PQEIATPL+ N  AV +E ESS+  P
Sbjct: 5   KQSARWNNVQFRSTLRYLHAALCSIIPVHEDPQEIATPLSHNDFAVCNEGESSQLSP 61

[Close]
BLAST of CSPI05G10570 vs. NCBI nr
Match: gi|700194476|gb|KGN49653.1| (hypothetical protein Csa_5G049020 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 7.9e-07
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 1 

Query: 15  NHYLGQVDELQVAVQEFITQNQTLKSQNMGFKAQNQVIMGMIEESSRRNDVQFRSTLKGL 74
           +H+  Q++ L+  +QE I Q Q LK        QNQVIM M+++++R NDVQF S L+ L
Sbjct: 98  HHHQVQIEGLKAKMQELILQEQELK-------VQNQVIMEMVKQTTRWNDVQFTSALRYL 157

Query: 75  HAAICSIIPVP 86
           ++++CSIIP P
Sbjct: 158 YSSMCSIIPTP 161

The following BLAST results are available for this feature:
BLAST of CSPI05G10570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G10570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM31_CUCSA5.1e-2993.15Uncharacterized protein OS=Cucumis sativus GN=Csa_5G201330 PE=4 SV=1[more]
A0A0A0LKG8_CUCSA4.5e-0963.16Uncharacterized protein OS=Cucumis sativus GN=Csa_2G073050 PE=4 SV=1[more]
A0A0A0KJB9_CUCSA5.5e-0745.07Uncharacterized protein OS=Cucumis sativus GN=Csa_5G049020 PE=4 SV=1[more]
BLAST of CSPI05G10570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G10570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195471|gb|KGN50648.1|7.3e-2993.15hypothetical protein Csa_5G201330 [Cucumis sativus][more]
gi|700206123|gb|KGN61242.1|6.5e-0963.16hypothetical protein Csa_2G073050 [Cucumis sativus][more]
gi|700194476|gb|KGN49653.1|7.9e-0745.07hypothetical protein Csa_5G049020 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G10570.1CSPI05G10570.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 21..41
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G10570Csa5G201330Cucumber (Chinese Long) v2cpicuB240
CSPI05G10570CsaV3_5G009030Cucumber (Chinese Long) v3cpicucB285
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G10570Silver-seed gourdcarcpiB0102
CSPI05G10570Silver-seed gourdcarcpiB0296
CSPI05G10570Silver-seed gourdcarcpiB0368
CSPI05G10570Silver-seed gourdcarcpiB0706
CSPI05G10570Silver-seed gourdcarcpiB1038
CSPI05G10570Cucumber (Chinese Long) v3cpicucB273
CSPI05G10570Cucumber (Chinese Long) v3cpicucB305
CSPI05G10570Cucumber (Chinese Long) v3cpicucB308
CSPI05G10570Watermelon (97103) v2cpiwmbB367
CSPI05G10570Watermelon (97103) v2cpiwmbB381
CSPI05G10570Watermelon (97103) v2cpiwmbB412
CSPI05G10570Wax gourdcpiwgoB437
CSPI05G10570Wax gourdcpiwgoB494
CSPI05G10570Wax gourdcpiwgoB497
CSPI05G10570Wax gourdcpiwgoB517
CSPI05G10570Wild cucumber (PI 183967)cpicpiB120
CSPI05G10570Wild cucumber (PI 183967)cpicpiB179
CSPI05G10570Wild cucumber (PI 183967)cpicpiB184
CSPI05G10570Cucumber (Gy14) v1cgycpiB196
CSPI05G10570Cucumber (Gy14) v1cgycpiB204
CSPI05G10570Cucumber (Gy14) v1cgycpiB280
CSPI05G10570Cucumber (Gy14) v1cgycpiB545
CSPI05G10570Cucurbita maxima (Rimu)cmacpiB229
CSPI05G10570Cucurbita maxima (Rimu)cmacpiB302
CSPI05G10570Cucurbita maxima (Rimu)cmacpiB556
CSPI05G10570Cucurbita maxima (Rimu)cmacpiB756
CSPI05G10570Cucurbita maxima (Rimu)cmacpiB757
CSPI05G10570Cucurbita maxima (Rimu)cmacpiB774
CSPI05G10570Cucurbita moschata (Rifu)cmocpiB294
CSPI05G10570Cucurbita moschata (Rifu)cmocpiB746
CSPI05G10570Cucurbita moschata (Rifu)cmocpiB747
CSPI05G10570Cucurbita moschata (Rifu)cmocpiB546
CSPI05G10570Cucurbita moschata (Rifu)cmocpiB763
CSPI05G10570Cucumber (Chinese Long) v2cpicuB230
CSPI05G10570Cucumber (Chinese Long) v2cpicuB256
CSPI05G10570Cucumber (Chinese Long) v2cpicuB258
CSPI05G10570Melon (DHL92) v3.5.1cpimeB361
CSPI05G10570Melon (DHL92) v3.5.1cpimeB391
CSPI05G10570Melon (DHL92) v3.5.1cpimeB394
CSPI05G10570Watermelon (Charleston Gray)cpiwcgB361
CSPI05G10570Watermelon (Charleston Gray)cpiwcgB400
CSPI05G10570Watermelon (Charleston Gray)cpiwcgB420
CSPI05G10570Watermelon (97103) v1cpiwmB448
CSPI05G10570Watermelon (97103) v1cpiwmB374
CSPI05G10570Watermelon (97103) v1cpiwmB393
CSPI05G10570Watermelon (97103) v1cpiwmB395
CSPI05G10570Watermelon (97103) v1cpiwmB442
CSPI05G10570Cucurbita pepo (Zucchini)cpecpiB194
CSPI05G10570Cucurbita pepo (Zucchini)cpecpiB437
CSPI05G10570Cucurbita pepo (Zucchini)cpecpiB438
CSPI05G10570Cucurbita pepo (Zucchini)cpecpiB457
CSPI05G10570Cucurbita pepo (Zucchini)cpecpiB737
CSPI05G10570Bottle gourd (USVL1VR-Ls)cpilsiB335
CSPI05G10570Bottle gourd (USVL1VR-Ls)cpilsiB363
CSPI05G10570Bottle gourd (USVL1VR-Ls)cpilsiB365
CSPI05G10570Bottle gourd (USVL1VR-Ls)cpilsiB366
CSPI05G10570Melon (DHL92) v3.6.1cpimedB352
CSPI05G10570Melon (DHL92) v3.6.1cpimedB374
CSPI05G10570Melon (DHL92) v3.6.1cpimedB385
CSPI05G10570Melon (DHL92) v3.6.1cpimedB390
CSPI05G10570Cucumber (Gy14) v2cgybcpiB135
CSPI05G10570Cucumber (Gy14) v2cgybcpiB226
CSPI05G10570Cucumber (Gy14) v2cgybcpiB283