CSPI05G10130 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G10130
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Tubby-like F-box protein
Location	Chr5 : 8606178 .. 8608156 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTGGATTATACTCGAGGTTCGATCTCGGAGAAGTTGTACTCAGGGAAATGCTACAACTACATCGAAATGAAGCTTGCTATTATGGGCTCTTATATAACCTTTATGCTTCAAATGGAAAATGGGGTGAAGTTAAAAAGGTGAGAGATTTGATGGTTCAGAGATGTTTGAACAAAGTCCGAGGGTATAACCTTGTAGAAACTAATGCAGGTGTGCTGTTTCATTAGGTGAAGCCACTTGTGTGGCTCATATCTTCATGTTCTCGTTAAGATAGTAAAAAATTTTGAAGTTCTGAAATACTGATTTGTGGAATTTTCTTACCACCCTTGACCTCTCCTTTGATGGAGTTTTGACGAGCCTTATCCAATAGGGAAATGTGAGATGTTGTTGATCGTCTAACTTTACTTGGAGAACTTCGGTGTTTGGAACCGTTCTTAGTTCGGGCCAACACTATAAGAAATGGGCCATTTAATAGCGTTCGAAATTGGACTATTGAAAACGAAATAAAAAACAAAAAAGTGGGAAATATAAAATTATCCCGCCCAATATTTCTCACGCTTTGGAGAACGTTTAACGATTTCATCTCTTTTGCTCAAGAGACGGCCGTCGTTCCACGCTTTATCTCTATTGAACGTTTCACGCTTGCGATACCCACCCACGTCCCGTCTCACACGACTGCCCTCCATTCAACCGACGACGTTGCCGTCGTTGTCTCTGTCCAATCGCCAACGCTGAAGCTCTAGCATCGCCATCGTCTATAAGCCAACACACCGTCGTCTACAAGAGTTTCGCTTAGGGTTCTTCGTCTATCAGCTCCTCCTCTCTTTACTGCTATTAGATACTTGGAGCTAAGGATTCGAGGTTAGTCTTCTTCTTCATTTCTTCTACTTCATTTTCCAACTCCAGTTATTAATAGGCTTGTTAATTGGAATTTGTATCTTGTTCTGCTGCCATTCAATTTATTTATAGTTTTGGTACTTCAATGGTACAGCTCTGCTGATTGAAAATGGGAAGTTTCTTCTTTCAGCAAAGCCTACACGAAGAACTACTAGCACGGAGTATATTATCTCAATGGGTGCCGAAAACATTTTGAGATCAAGTAGCTCTTACATTGGAAAACTGAGGTGAGACTGCACTTGACGAACAGCTATGAAATTTATTGTTTGCATACTTTGCTGTCTGTGTTAATATAATTACAGCACTCCAGACTTTCACACTTCTTAGGTCACAAATTATGATTTCCATTATATGTAATATACATTAAGTCTGTGAGAATGACATTGTGATATCAAACTTAAGTCTATTCTTGAGGTAATGTTCTGGTTGTCCAGGTTCCCGGTTGGAATTGAGGTAACGTTCTATGTCAATTAGGGCTTGCTTAAGTTCTGTTATTTTAGTTATATTCAAATGAGGTAACGTTCTATGTCAATTAGGGCTTGCTTAAGTTCTGTCATTTTAGTTATATTCAAATGCCTATTTCAACTTTTAACAGGAAAAGAGGTTTCGATGACTGTTCTCATTACTGTTATCTTTTGGGTTTCGTTTAGGTTTGATTTTTTATTGCGTCCTTCTTTGAGTGTGATGGGCGTCTTCGGTTTCATTTTTTTTTTTTTGTTATTTCTCTTTACTCGGTTCTGCAAGCAATGTTACTTCAAAATTTGACGTTCATTTCTGGGTGGTTCTTTTGTTGGAAGGTGGGTGATTGAAGTCAACGGTGCCCTGGGAACTCTCTGTGCTAATGAAACCTATCAGCTTCAGGTCGACTTTCCTGAGCATTACCCAATGGAAACCCCACAGGTTTAAATATAAGCCATCCAACCTTGAGGGTTGAGATCATTTCTATTCCAATCACCCCTTTAGCAGCTACCAGCTACATTAATCGATTGTATTGTGTTTGTTTTTTGCTGTAGGTTATATATTTCTGCATCCAGCTCCTCTGCATCATCATATCTATAGCAATGGTCACATTTGTCTAG

mRNA sequence

ATGGATGTGGATTATACTCGAGGTTCGATCTCGGAGAAGTTGTACTCAGGGAAATGCTACAACTACATCGAAATGAAGCTTGCTATTATGGGCTCTTATATAACCTTTATGCTTCAAATGGAAAATGGGGTGAAGTTAAAAAGGGTTCTTCGTCTATCAGCTCCTCCTCTCTTTACTGCTATTAGATACTTGGAGCTAAGGATTCGAGCTCTGCTGATTGAAAATGGGAAGTTTCTTCTTTCAGCAAAGCCTACACGAAGAACTACTAGCACGGAGTATATTATCTCAATGGGTGCCGAAAACATTTTGAGATCAAGTAGCTCTTACATTGGAAAACTGAGGTGGGTGATTGAAGTCAACGGTGCCCTGGGAACTCTCTGTGCTAATGAAACCTATCAGCTTCAGGTCGACTTTCCTGAGCATTACCCAATGGAAACCCCACAGGTTATATATTTCTGCATCCAGCTCCTCTGCATCATCATATCTATAGCAATGGTCACATTTGTCTAG

Coding sequence (CDS)

ATGGATGTGGATTATACTCGAGGTTCGATCTCGGAGAAGTTGTACTCAGGGAAATGCTACAACTACATCGAAATGAAGCTTGCTATTATGGGCTCTTATATAACCTTTATGCTTCAAATGGAAAATGGGGTGAAGTTAAAAAGGGTTCTTCGTCTATCAGCTCCTCCTCTCTTTACTGCTATTAGATACTTGGAGCTAAGGATTCGAGCTCTGCTGATTGAAAATGGGAAGTTTCTTCTTTCAGCAAAGCCTACACGAAGAACTACTAGCACGGAGTATATTATCTCAATGGGTGCCGAAAACATTTTGAGATCAAGTAGCTCTTACATTGGAAAACTGAGGTGGGTGATTGAAGTCAACGGTGCCCTGGGAACTCTCTGTGCTAATGAAACCTATCAGCTTCAGGTCGACTTTCCTGAGCATTACCCAATGGAAACCCCACAGGTTATATATTTCTGCATCCAGCTCCTCTGCATCATCATATCTATAGCAATGGTCACATTTGTCTAG

Homology

[Close]

BLAST of CSPI05G10130 vs. Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-12
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 70  ALLIENGKFLLSAKPTRRTTSTEYIISMGAENILRSSSSYIGKLR 115
           ALL+ENGKFLLSAK TRRTT TEYIISM A+NI RSS+SY+GKLR
Sbjct: 152 ALLVENGKFLLSAKRTRRTTRTEYIISMDADNISRSSNSYLGKLR 196

[Close]

BLAST of CSPI05G10130 vs. Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.2e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 114 RWVIEVNGALGTLCANETYQLQVDFPEHYPMETPQVIY 152
           RW+IEV GA GTL AN+TYQLQVDFPEHYPME+PQVI+
Sbjct: 45  RWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIF 82

[Close]

BLAST of CSPI05G10130 vs. Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin-conjugating enzyme E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 114 RWVIEVNGALGTLCANETYQLQVDFPEHYPMETPQVIY 152
           RW+IEV+G  GTL ANETYQLQV+FPEHYPME PQVI+
Sbjct: 45  RWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIF 82

[Close]

BLAST of CSPI05G10130 vs. Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-10
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1


Query: 114 RWVIEVNGALGTLCANETYQLQVDFPEHYPMETPQVIY 152
           +WVIEV GA GTL ANETY LQV+FP+HYPME PQVI+
Sbjct: 45  KWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIF 82

[Close]

BLAST of CSPI05G10130 vs. Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-10
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1


Query: 114 RWVIEVNGALGTLCANETYQLQVDFPEHYPMETPQVIY 152
           +W I+V GA GTL ANETYQLQV+FPEHYPME PQV++
Sbjct: 45  KWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVF 82

[Close]

BLAST of CSPI05G10130 vs. TrEMBL
Match: A0A0A0KLZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190470 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-55
Identity = 118/124 (95.16%), Postives = 118/124 (95.16%), Query Frame = 1


Query: 46  LKRVLRLSAPPLFTAIRYLELRIRALLIENGKFLLSAKPTRRTTSTEYIISMGAENILRS 105
           L  VLRLSAPPLFTAIR LELRIRALLIENGKFLLS KPTRRTTSTEYIISMGAENILRS
Sbjct: 171 LSLVLRLSAPPLFTAIRNLELRIRALLIENGKFLLSPKPTRRTTSTEYIISMGAENILRS 230

Query: 106 SSSYIGKLRWVIEVNGALGTLCANETYQLQVDFPEHYPMETPQVIYFCIQLLCIIISIAM 165
           SSSYIGKLRWVIEVNGA GTL ANETYQLQVDFPEHYPMETPQVIYFCIQLLCIIISIAM
Sbjct: 231 SSSYIGKLRWVIEVNGAPGTLYANETYQLQVDFPEHYPMETPQVIYFCIQLLCIIISIAM 290

Query: 166 VTFV 170
           VTFV
Sbjct: 291 VTFV 294

[Close]

BLAST of CSPI05G10130 vs. TrEMBL
Match: A0A0A0L6H9_CUCSA (Tubby-like F-box protein OS=Cucumis sativus GN=Csa_3G209470 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.4e-12
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1


Query: 70  ALLIENGKFLLSAKPTRRTTSTEYIISMGAENILRSSSSYIGKLR 115
           ALL+ENGKFLLSAK TRRTTSTEYIISM AENI RSSSSYIGKLR
Sbjct: 147 ALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLR 191

[Close]

BLAST of CSPI05G10130 vs. TrEMBL
Match: A0A061DYB5_THECC (Tubby-like F-box protein OS=Theobroma cacao GN=TCM_006433 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1


Query: 70  ALLIENGKFLLSAKPTRRTTSTEYIISMGAENILRSSSSYIGKLR 115
           ALL+ENGKFLLSAK TRRTTSTEYIISM A+NI RSSSSYIGKLR
Sbjct: 146 ALLVENGKFLLSAKRTRRTTSTEYIISMNADNISRSSSSYIGKLR 190

[Close]

BLAST of CSPI05G10130 vs. TrEMBL
Match: A0A0D2RLI1_GOSRA (Tubby-like F-box protein OS=Gossypium raimondii GN=B456_005G259600 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1


Query: 70  ALLIENGKFLLSAKPTRRTTSTEYIISMGAENILRSSSSYIGKLR 115
           ALL+ENGKFLLSAK TRRTTSTEYIISM A+NI RSSSSYIGKLR
Sbjct: 146 ALLVENGKFLLSAKRTRRTTSTEYIISMNADNISRSSSSYIGKLR 190

[Close]

BLAST of CSPI05G10130 vs. TrEMBL
Match: B9H4G0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25360g PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 114 RWVIEVNGALGTLCANETYQLQVDFPEHYPMETPQVIY 152
           RWVIEVNGA GTL ANETYQLQVDFPEHYPME PQVI+
Sbjct: 156 RWVIEVNGAAGTLYANETYQLQVDFPEHYPMEAPQVIF 193

[Close]

BLAST of CSPI05G10130 vs. TAIR10
Match: AT1G25280.1 (AT1G25280.1 tubby like protein 10)

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-13
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1


Query: 70  ALLIENGKFLLSAKPTRRTTSTEYIISMGAENILRSSSSYIGKLR 115
           ALL+ENGKFLLSAK TRRTT TEYIISM A+NI RSS+SY+GKLR
Sbjct: 152 ALLVENGKFLLSAKRTRRTTRTEYIISMDADNISRSSNSYLGKLR 196

[Close]

BLAST of CSPI05G10130 vs. TAIR10
Match: AT1G75440.1 (AT1G75440.1 ubiquitin-conjugating enzyme 16)

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-13
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1


Query: 114 RWVIEVNGALGTLCANETYQLQVDFPEHYPMETPQVIY 152
           RW+IEV GA GTL AN+TYQLQVDFPEHYPME+PQVI+
Sbjct: 45  RWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIF 82

[Close]

BLAST of CSPI05G10130 vs. TAIR10
Match: AT4G36410.1 (AT4G36410.1 ubiquitin-conjugating enzyme 17)

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-13
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1


Query: 114 RWVIEVNGALGTLCANETYQLQVDFPEHYPMETPQVIY 152
           RW+IEV+G  GTL ANETYQLQV+FPEHYPME PQVI+
Sbjct: 45  RWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIF 82

[Close]

BLAST of CSPI05G10130 vs. TAIR10
Match: AT1G45050.1 (AT1G45050.1 Ubiquitin-conjugating enzyme family protein)

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-12
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 1


Query: 114 RWVIEVNGALGTLCANETYQLQVDFPEHYPMETPQVIY 152
           +W I+V GA GTL ANETYQLQV+FPEHYPME PQV++
Sbjct: 45  KWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVF 82

[Close]

BLAST of CSPI05G10130 vs. TAIR10
Match: AT5G42990.1 (AT5G42990.1 ubiquitin-conjugating enzyme 18)

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-12
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1


Query: 114 RWVIEVNGALGTLCANETYQLQVDFPEHYPMETPQVIY 152
           +WVIEV GA GTL ANETY LQV+FP+HYPME PQVI+
Sbjct: 45  KWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIF 82

[Close]

BLAST of CSPI05G10130 vs. NCBI nr
Match: gi|700195426|gb|KGN50603.1| (hypothetical protein Csa_5G190470 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 2.3e-55
Identity = 118/124 (95.16%), Postives = 118/124 (95.16%), Query Frame = 1


Query: 46  LKRVLRLSAPPLFTAIRYLELRIRALLIENGKFLLSAKPTRRTTSTEYIISMGAENILRS 105
           L  VLRLSAPPLFTAIR LELRIRALLIENGKFLLS KPTRRTTSTEYIISMGAENILRS
Sbjct: 171 LSLVLRLSAPPLFTAIRNLELRIRALLIENGKFLLSPKPTRRTTSTEYIISMGAENILRS 230

Query: 106 SSSYIGKLRWVIEVNGALGTLCANETYQLQVDFPEHYPMETPQVIYFCIQLLCIIISIAM 165
           SSSYIGKLRWVIEVNGA GTL ANETYQLQVDFPEHYPMETPQVIYFCIQLLCIIISIAM
Sbjct: 231 SSSYIGKLRWVIEVNGAPGTLYANETYQLQVDFPEHYPMETPQVIYFCIQLLCIIISIAM 290

Query: 166 VTFV 170
           VTFV
Sbjct: 291 VTFV 294

[Close]

BLAST of CSPI05G10130 vs. NCBI nr
Match: gi|778680121|ref|XP_004140690.2| (PREDICTED: tubby-like F-box protein 8 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-12
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1


Query: 70  ALLIENGKFLLSAKPTRRTTSTEYIISMGAENILRSSSSYIGKLR 115
           ALL+ENGKFLLSAK TRRTTSTEYIISM AENI RSSSSYIGKLR
Sbjct: 147 ALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLR 191

[Close]

BLAST of CSPI05G10130 vs. NCBI nr
Match: gi|659112194|ref|XP_008456108.1| (PREDICTED: tubby-like F-box protein 8 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-12
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1


Query: 70  ALLIENGKFLLSAKPTRRTTSTEYIISMGAENILRSSSSYIGKLR 115
           ALL+ENGKFLLSAK TRRTTSTEYIISM AENI RSSSSYIGKLR
Sbjct: 147 ALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLR 191

[Close]

BLAST of CSPI05G10130 vs. NCBI nr
Match: gi|823161347|ref|XP_012480545.1| (PREDICTED: tubby-like F-box protein 8 [Gossypium raimondii])

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1


Query: 70  ALLIENGKFLLSAKPTRRTTSTEYIISMGAENILRSSSSYIGKLR 115
           ALL+ENGKFLLSAK TRRTTSTEYIISM A+NI RSSSSYIGKLR
Sbjct: 146 ALLVENGKFLLSAKRTRRTTSTEYIISMNADNISRSSSSYIGKLR 190

[Close]

BLAST of CSPI05G10130 vs. NCBI nr
Match: gi|590683382|ref|XP_007041585.1| (Tubby like protein 10 isoform 1 [Theobroma cacao])

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1


Query: 70  ALLIENGKFLLSAKPTRRTTSTEYIISMGAENILRSSSSYIGKLR 115
           ALL+ENGKFLLSAK TRRTTSTEYIISM A+NI RSSSSYIGKLR
Sbjct: 146 ALLVENGKFLLSAKRTRRTTSTEYIISMNADNISRSSSSYIGKLR 190

The following BLAST results are available for this feature:

BLAST of CSPI05G10130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TLP10_ARATH	1.8e-12	82.22	Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1	[more]
UBC16_ARATH	9.2e-12	81.58	Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=...	[more]
UBC17_ARATH	1.6e-11	78.95	Probable ubiquitin-conjugating enzyme E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=...	[more]
UBC18_ARATH	1.0e-10	76.32	Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=...	[more]
UBC15_ARATH	1.0e-10	73.68	Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2	[more]

BLAST of CSPI05G10130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLZ5_CUCSA	1.6e-55	95.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190470 PE=3 SV=1	[more]
A0A0A0L6H9_CUCSA	6.4e-12	91.11	Tubby-like F-box protein OS=Cucumis sativus GN=Csa_3G209470 PE=3 SV=1	[more]
A0A061DYB5_THECC	1.1e-11	88.89	Tubby-like F-box protein OS=Theobroma cacao GN=TCM_006433 PE=3 SV=1	[more]
A0A0D2RLI1_GOSRA	1.1e-11	88.89	Tubby-like F-box protein OS=Gossypium raimondii GN=B456_005G259600 PE=3 SV=1	[more]
B9H4G0_POPTR	2.4e-11	89.47	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25360g PE=3 SV=1	[more]

BLAST of CSPI05G10130 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G25280.1	1.0e-13	82.22	tubby like protein 10	[more]
AT1G75440.1	5.2e-13	81.58	ubiquitin-conjugating enzyme 16	[more]
AT4G36410.1	8.8e-13	78.95	ubiquitin-conjugating enzyme 17	[more]
AT1G45050.1	5.7e-12	73.68	Ubiquitin-conjugating enzyme family protein	[more]
AT5G42990.1	5.7e-12	76.32	ubiquitin-conjugating enzyme 18	[more]

BLAST of CSPI05G10130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195426\|gb\|KGN50603.1\|	2.3e-55	95.16	hypothetical protein Csa_5G190470 [Cucumis sativus]	[more]
gi\|778680121\|ref\|XP_004140690.2\|	9.2e-12	91.11	PREDICTED: tubby-like F-box protein 8 [Cucumis sativus]	[more]
gi\|659112194\|ref\|XP_008456108.1\|	9.2e-12	91.11	PREDICTED: tubby-like F-box protein 8 [Cucumis melo]	[more]
gi\|823161347\|ref\|XP_012480545.1\|	1.6e-11	88.89	PREDICTED: tubby-like F-box protein 8 [Gossypium raimondii]	[more]
gi\|590683382\|ref\|XP_007041585.1\|	1.6e-11	88.89	Tubby like protein 10 isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000007	Tubby_C
IPR000608	UBQ-conjugat_E2
IPR016135	UBQ-conjugating_enzyme/RWD
IPR025659	Tubby-like_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0009620	response to fungus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G10130.1	CSPI05G10130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000007	Tubby, C-terminal	GENE3D	G3DSA:3.20.90.10		coord: 71..114 score: 5.
IPR000007	Tubby, C-terminal	PFAM	PF01167	Tub	coord: 73..114 score: 2.
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 112..151 score: 6.
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	G3DSA:3.10.110.10		coord: 115..150 score: 4.
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	unknown	SSF54495	UBC-like	coord: 115..153 score: 3.2
IPR025659	Tubby C-terminal-like domain	unknown	SSF54518	Tubby C-terminal domain-like	coord: 74..115 score: 7.3
None	No IPR available	PANTHER	PTHR16517	TUBBY-RELATED	coord: 70..114 score: 6.3
None	No IPR available	PANTHER	PTHR16517:SF31	TUBBY-LIKE F-BOX PROTEIN 1-RELATED	coord: 70..114 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G10130	Csa5G190470	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G10130	CsaV3_5G008620	Cucumber (Chinese Long) v3	cpicucB285
CSPI05G10130	Cucsa.164840	Cucumber (Gy14) v1	cgycpiB258

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G10130	Watermelon (97103) v2	cpiwmbB381
CSPI05G10130	Watermelon (97103) v2	cpiwmbB394
CSPI05G10130	Watermelon (97103) v2	cpiwmbB412
CSPI05G10130	Wax gourd	cpiwgoB494
CSPI05G10130	Wax gourd	cpiwgoB515
CSPI05G10130	Wax gourd	cpiwgoB517
CSPI05G10130	Wild cucumber (PI 183967)	cpicpiB154
CSPI05G10130	Wild cucumber (PI 183967)	cpicpiB179
CSPI05G10130	Cucumber (Gy14) v1	cgycpiB057
CSPI05G10130	Cucumber (Gy14) v1	cgycpiB196
CSPI05G10130	Cucurbita maxima (Rimu)	cmacpiB229
CSPI05G10130	Cucurbita maxima (Rimu)	cmacpiB302
CSPI05G10130	Cucurbita maxima (Rimu)	cmacpiB685
CSPI05G10130	Cucurbita maxima (Rimu)	cmacpiB756
CSPI05G10130	Cucurbita maxima (Rimu)	cmacpiB757
CSPI05G10130	Cucurbita maxima (Rimu)	cmacpiB774
CSPI05G10130	Cucurbita moschata (Rifu)	cmocpiB294
CSPI05G10130	Cucurbita moschata (Rifu)	cmocpiB746
CSPI05G10130	Cucurbita moschata (Rifu)	cmocpiB747
CSPI05G10130	Cucurbita moschata (Rifu)	cmocpiB677
CSPI05G10130	Cucurbita moschata (Rifu)	cmocpiB763
CSPI05G10130	Cucumber (Chinese Long) v2	cpicuB215
CSPI05G10130	Cucumber (Chinese Long) v2	cpicuB256
CSPI05G10130	Melon (DHL92) v3.5.1	cpimeB360
CSPI05G10130	Melon (DHL92) v3.5.1	cpimeB391
CSPI05G10130	Melon (DHL92) v3.5.1	cpimeB408
CSPI05G10130	Watermelon (Charleston Gray)	cpiwcgB361
CSPI05G10130	Watermelon (Charleston Gray)	cpiwcgB404
CSPI05G10130	Watermelon (Charleston Gray)	cpiwcgB420
CSPI05G10130	Watermelon (97103) v1	cpiwmB448
CSPI05G10130	Watermelon (97103) v1	cpiwmB374
CSPI05G10130	Watermelon (97103) v1	cpiwmB399
CSPI05G10130	Watermelon (97103) v1	cpiwmB435
CSPI05G10130	Cucurbita pepo (Zucchini)	cpecpiB079
CSPI05G10130	Cucurbita pepo (Zucchini)	cpecpiB194
CSPI05G10130	Cucurbita pepo (Zucchini)	cpecpiB437
CSPI05G10130	Cucurbita pepo (Zucchini)	cpecpiB438
CSPI05G10130	Cucurbita pepo (Zucchini)	cpecpiB457
CSPI05G10130	Bottle gourd (USVL1VR-Ls)	cpilsiB345
CSPI05G10130	Bottle gourd (USVL1VR-Ls)	cpilsiB365
CSPI05G10130	Bottle gourd (USVL1VR-Ls)	cpilsiB366
CSPI05G10130	Melon (DHL92) v3.6.1	cpimedB352
CSPI05G10130	Melon (DHL92) v3.6.1	cpimedB385
CSPI05G10130	Melon (DHL92) v3.6.1	cpimedB406
CSPI05G10130	Cucumber (Gy14) v2	cgybcpiB181
CSPI05G10130	Cucumber (Gy14) v2	cgybcpiB226
CSPI05G10130	Cucumber (Gy14) v2	cgybcpiB283
CSPI05G10130	Silver-seed gourd	carcpiB0102
CSPI05G10130	Silver-seed gourd	carcpiB0296
CSPI05G10130	Silver-seed gourd	carcpiB0706
CSPI05G10130	Silver-seed gourd	carcpiB1038
CSPI05G10130	Cucumber (Chinese Long) v3	cpicucB305