CSPI05G09380 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G09380
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	DUF674 family protein
Location	Chr5 : 7912814 .. 7913545 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCGAGAGATTACTTGTGTAAAGCCAATATCTTATTGTGAGGATTTAGGCTATGTGAAGGATTTGGTGACTTACATCGTGATGGATGATTTAAGTATTACGCCCATGTCTAGTATCCCCACCATTACTCTCTTGAAAAAGTTCAATATCAAAGAGATGGCTGCTTTGGAGGAGAAGCTCATCACTTTCAATTTCAATGAGGTAATATATATTATTTGAACAATTCTTAATTATAATATAGGCTGTAGCGTGCAGTTTAGTTCTTCTGTATGCATAAAAAATAATTTTTAAGTACTTTTTTTTAAAAGAAATAAACAAAGTACAACGTTATAGCTTTTAAAGCATGTGTTGAATTTTTGGTATAAAAAATACTTTGGTGCATTTTTGGTATCACATATCGGGCCAAATTGTCCATAAATTATTATGTGACAAGTTCCTTTATAATATGAATTTCCACTAGTATTTACTAAAATAAATTCATTAGGTGAACAAATGAAATGTGGACTAGAAAATTAAATATCCAATGAGGTATATTTTTAATTTGTTATTAAGGTCACAGTTTGTGGTTATCTTTTTATGAAGGGAGTGAAATTGTTAAAGGCTTCTCTCGAGTCCAAGACAGCGCTCACCGATGTCTTTCTTGGAAAAGTTTTAAGTCCTCCAAAAACTGTTTCGAATGGAAAGAAACCCACTCCAAAAGTTACAGTAAAAAGGAAGAGAAGGAAATAA

mRNA sequence

ATGAGTCGAGAGATTACTTGTGTAAAGCCAATATCTTATTGTGAGGATTTAGGCTATGTGAAGGATTTGGTGACTTACATCGTGATGGATGATTTAAGTATTACGCCCATGTCTAGTATCCCCACCATTACTCTCTTGAAAAAGTTCAATATCAAAGAGATGGCTGCTTTGGAGGAGAAGCTCATCACTTTCAATTTCAATGAGGGAGTGAAATTGTTAAAGGCTTCTCTCGAGTCCAAGACAGCGCTCACCGATGTCTTTCTTGGAAAAGTTTTAAGTCCTCCAAAAACTGTTTCGAATGGAAAGAAACCCACTCCAAAAGTTACAGTAAAAAGGAAGAGAAGGAAATAA

Coding sequence (CDS)

ATGAGTCGAGAGATTACTTGTGTAAAGCCAATATCTTATTGTGAGGATTTAGGCTATGTGAAGGATTTGGTGACTTACATCGTGATGGATGATTTAAGTATTACGCCCATGTCTAGTATCCCCACCATTACTCTCTTGAAAAAGTTCAATATCAAAGAGATGGCTGCTTTGGAGGAGAAGCTCATCACTTTCAATTTCAATGAGGGAGTGAAATTGTTAAAGGCTTCTCTCGAGTCCAAGACAGCGCTCACCGATGTCTTTCTTGGAAAAGTTTTAAGTCCTCCAAAAACTGTTTCGAATGGAAAGAAACCCACTCCAAAAGTTACAGTAAAAAGGAAGAGAAGGAAATAA

Homology

[Close]

BLAST of CSPI05G09380 vs. TrEMBL
Match: A0A0A0KLT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180580 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 15  EDLGYVKDLVTYIVMDDLSITPMSSIPTITLLKKFNIKEMAALEEKLITFNFNEGVKLLK 74
           E+ GYVKD+VTY+V DDLS+ PMS+I TITLL  FNIK + ALEEKL+T   N+GVKLLK
Sbjct: 173 EEGGYVKDVVTYMVKDDLSVKPMSTISTITLLNNFNIKNVNALEEKLVTLTANQGVKLLK 232

Query: 75  ASLESKTALTDVFL 89
           ASL+S T LTDVFL
Sbjct: 233 ASLQSNTVLTDVFL 246

[Close]

BLAST of CSPI05G09380 vs. TrEMBL
Match: A0A061FU96_THECC (DNA polymerase zeta catalytic subunit, putative OS=Theobroma cacao GN=TCM_042954 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.1e-18
Identity = 53/94 (56.38%), Postives = 69/94 (73.40%), Query Frame = 1


Query: 1   MSREITCVKP----ISYCEDLGYVKDLVTYIVMDDLSITPMSSIPTITLLKKFNIKEMAA 60
           MS + T V P     S  ++ GYVK +VTY++MDDL + PMS+I  ITLL KF++K++  
Sbjct: 138 MSHKATFVNPPERAASSSDEGGYVKGVVTYMIMDDLVVRPMSTISCITLLNKFSVKDVGV 197

Query: 61  LEEKLITFNFNEGVKLLKASLESKTALTDVFLGK 91
           LEEK I F  +EGVKLLKAS++SK+ LTDVFLGK
Sbjct: 198 LEEKAIDFGMDEGVKLLKASMQSKSVLTDVFLGK 231

[Close]

BLAST of CSPI05G09380 vs. TrEMBL
Match: M5X812_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010643mg PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.4e-18
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 1


Query: 1   MSREITCVKP---ISYCEDLGYVKDLVTYIVMDDLSITPMSSIPTITLLKKFNIKEMAAL 60
           MS E+T V P   ++   + GYVK +VTY+VMDDL + PMS+I +I +L KFN+KE+ AL
Sbjct: 146 MSNEVTYVSPAPTVARPSEGGYVKGVVTYMVMDDLEVKPMSTISSIAMLNKFNVKEVGAL 205

Query: 61  EEKLITFNFNEGVKLLKASLESKTALTDVFLG 90
           EEK++     EG+KLLKASLE+ T LT VFLG
Sbjct: 206 EEKVVNLGMEEGLKLLKASLETSTVLTKVFLG 237

[Close]

BLAST of CSPI05G09380 vs. TrEMBL
Match: A0A0D2UXR9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G247000 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-17
Identity = 53/92 (57.61%), Postives = 65/92 (70.65%), Query Frame = 1


Query: 1   MSREITCVKPI--SYCEDLGYVKDLVTYIVMDDLSITPMSSIPTITLLKKFNIKEMAALE 60
           M++  T V P   S   + GYVK +VTY++MDDL +TPMS+I   TLL KFNIK++  LE
Sbjct: 140 MTQNATIVNPRKGSSTNEGGYVKGVVTYMIMDDLVVTPMSAISCFTLLNKFNIKDVGVLE 199

Query: 61  EKLITFNFNEGVKLLKASLESKTALTDVFLGK 91
           EK I    +EGVKLLKASL+SKT LTD FL K
Sbjct: 200 EKTINIGIDEGVKLLKASLQSKTVLTDAFLKK 231

[Close]

BLAST of CSPI05G09380 vs. TrEMBL
Match: A0A0S3SL65_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G011800 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.9e-17
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 1


Query: 15  EDLGYVKDLVTYIVMDDLSITPMSSIPTITLLKKFNIKEMAALEEKLITFNFNEGVKLLK 74
           E  G+VK++VTY+VMDDL I PMSSI ++TLL KFN+KE+  L+EK++  + N+GV LLK
Sbjct: 158 EKSGFVKEVVTYMVMDDLIIQPMSSISSLTLLNKFNLKEVGVLQEKVVELDMNQGVSLLK 217

Query: 75  ASLESKTALTDVFLGKVLSP 95
           ASL+SKT LTDVFL    +P
Sbjct: 218 ASLQSKTVLTDVFLKNHSAP 237

[Close]

BLAST of CSPI05G09380 vs. TAIR10
Match: AT5G01140.1 (AT5G01140.1 Protein of unknown function (DUF674))

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-06
Identity = 38/111 (34.23%), Postives = 57/111 (51.35%), Query Frame = 1


Query: 2   SREITCVKPISYC-----EDLGYVKDLVTYIVMDDLSITPMSSIPTITLLKKFNIKEMAA 61
           ++ +T V P S C     +  G+VK    +IV DDL +TP  S  T ++LKKF I     
Sbjct: 358 TKRMTFVDPKSDCCGRSKDGKGFVKRGTKFIVSDDLIVTPKISSSTFSVLKKFQIL-TDD 417

Query: 62  LEEKLITFNFNEGVKLLKASLESKTALTDVFLGKVLSPPKTVSNGKKPTPK 108
           LE + IT +  + + LL ASL + +AL+  F   ++  PK  +    P  K
Sbjct: 418 LEVQAITISNADALNLLGASLVTSSALSSAFGNLIVKKPKEENVSWNPVSK 467

[Close]

BLAST of CSPI05G09380 vs. NCBI nr
Match: gi|778708355|ref|XP_004147724.2| (PREDICTED: uncharacterized protein LOC101207769 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 3.9e-54
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 1


Query: 1   MSREITCVKPISYCEDLGYVKDLVTYIVMDDLSITPMSSIPTITLLKKFNIKEMAALEEK 60
           MSREITCVKPISYCEDLGYVKDLVTYIVMDDLSI PMSSIPTITLLKKFNIKEMAALEEK
Sbjct: 241 MSREITCVKPISYCEDLGYVKDLVTYIVMDDLSIMPMSSIPTITLLKKFNIKEMAALEEK 300

Query: 61  LITFNFNEGVKLLKASLESKTALTDVFLGKVLSPPKTVSNGKKPTPKVTVKRKRRK 117
           LITFNFNEGVKLLKASLESKTALTDVFLGKVLSPPKTVSNGKKPTPKVTVKRKRRK
Sbjct: 301 LITFNFNEGVKLLKASLESKTALTDVFLGKVLSPPKTVSNGKKPTPKVTVKRKRRK 356

[Close]

BLAST of CSPI05G09380 vs. NCBI nr
Match: gi|659123589|ref|XP_008461735.1| (PREDICTED: uncharacterized protein LOC103500268 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 4.8e-20
Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = 1


Query: 1   MSREITCVKP----ISYCEDLG----YVKDLVTYIVMDDLSITPMSSIPTITLLKKFNIK 60
           MSRE   V P        +D+G    +VK +VTY+VMDDLS+ PMS+I +ITLL KFNIK
Sbjct: 134 MSRECALVNPPNANTQATQDVGEFGGFVKGVVTYMVMDDLSVKPMSTISSITLLNKFNIK 193

Query: 61  EMAALEEKLITFNFNEGVKLLKASLESKTALTDVFLGK 91
           E+ ALEEK+IT + N+GVKLL+ASL+SKT LTDVFLG+
Sbjct: 194 EVGALEEKVITLDVNQGVKLLRASLQSKTVLTDVFLGR 231

[Close]

BLAST of CSPI05G09380 vs. NCBI nr
Match: gi|449459978|ref|XP_004147723.1| (PREDICTED: uncharacterized protein LOC101207526 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 1


Query: 1   MSREITCVKPISY----CEDLG----YVKDLVTYIVMDDLSITPMSSIPTITLLKKFNIK 60
           MSRE   V P S      +D+G    +VK +VTY+VMDDLS+ PMS+I +ITLL KFNIK
Sbjct: 133 MSRECGFVNPPSANAQATQDVGEFGGFVKGVVTYMVMDDLSVKPMSTISSITLLNKFNIK 192

Query: 61  EMAALEEKLITFNFNEGVKLLKASLESKTALTDVFLGKVL 93
           E+ ALEEK++T + ++G+KLLKASL+SKT LTDVFLG+ L
Sbjct: 193 EVGALEEKVVTLDVSQGLKLLKASLQSKTVLTDVFLGRNL 232

[Close]

BLAST of CSPI05G09380 vs. NCBI nr
Match: gi|449459976|ref|XP_004147722.1| (PREDICTED: uncharacterized protein LOC101207272 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 15  EDLGYVKDLVTYIVMDDLSITPMSSIPTITLLKKFNIKEMAALEEKLITFNFNEGVKLLK 74
           E+ GYVKD+VTY+V DDLS+ PMS+I TITLL  FNIK + ALEEKL+T   N+GVKLLK
Sbjct: 173 EEGGYVKDVVTYMVKDDLSVKPMSTISTITLLNNFNIKNVNALEEKLVTLTANQGVKLLK 232

Query: 75  ASLESKTALTDVFL 89
           ASL+S T LTDVFL
Sbjct: 233 ASLQSNTVLTDVFL 246

[Close]

BLAST of CSPI05G09380 vs. NCBI nr
Match: gi|720055894|ref|XP_010273528.1| (PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera])

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1


Query: 1   MSREITCVKPISYCEDL------GYVKDLVTYIVMDDLSITPMSSIPTITLLKKFNIKEM 60
           MSR++  V+     ED       GYVK +VTY+VMDDL++ PMS+I TITLL KFN+KE+
Sbjct: 149 MSRKMQYVESQRMTEDNTTGEKGGYVKGVVTYMVMDDLAVMPMSTISTITLLNKFNVKEV 208

Query: 61  AALEEKLITFNFNEGVKLLKASLESKTALTDVFLGKV 92
             LEE+++   FNEGV L+KASL+S T LTD+FLGK+
Sbjct: 209 GNLEERVVDVGFNEGVALVKASLQSTTVLTDIFLGKM 245

The following BLAST results are available for this feature:

BLAST of CSPI05G09380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G09380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLT4_CUCSA	1.1e-18	70.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180580 PE=4 SV=1	[more]
A0A061FU96_THECC	3.1e-18	56.38	DNA polymerase zeta catalytic subunit, putative OS=Theobroma cacao GN=TCM_042954...	[more]
M5X812_PRUPE	5.4e-18	55.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010643mg PE=4 SV=1	[more]
A0A0D2UXR9_GOSRA	2.0e-17	57.61	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G247000 PE=4 SV=1	[more]
A0A0S3SL65_PHAAN	5.9e-17	60.00	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G011800 PE=...	[more]

BLAST of CSPI05G09380 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G01140.1	2.5e-06	34.23	Protein of unknown function (DUF674)	[more]

BLAST of CSPI05G09380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708355\|ref\|XP_004147724.2\|	3.9e-54	99.14	PREDICTED: uncharacterized protein LOC101207769 [Cucumis sativus]	[more]
gi\|659123589\|ref\|XP_008461735.1\|	4.8e-20	60.20	PREDICTED: uncharacterized protein LOC103500268 [Cucumis melo]	[more]
gi\|449459978\|ref\|XP_004147723.1\|	2.4e-19	59.00	PREDICTED: uncharacterized protein LOC101207526 [Cucumis sativus]	[more]
gi\|449459976\|ref\|XP_004147722.1\|	1.5e-18	70.27	PREDICTED: uncharacterized protein LOC101207272 [Cucumis sativus]	[more]
gi\|720055894\|ref\|XP_010273528.1\|	2.0e-18	55.67	PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007750	DUF674

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G09380.1	CSPI05G09380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007750	Protein of unknown function DUF674	PFAM	PF05056	DUF674	coord: 16..111 score: 1.2
None	No IPR available	PANTHER	PTHR33103	FAMILY NOT NAMED	coord: 1..90 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G09380	CsaV3_5G006750	Cucumber (Chinese Long) v3	cpicucB285

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G09380	Cucurbita pepo (Zucchini)	cpecpiB437
CSPI05G09380	Cucurbita pepo (Zucchini)	cpecpiB438
CSPI05G09380	Bottle gourd (USVL1VR-Ls)	cpilsiB346
CSPI05G09380	Bottle gourd (USVL1VR-Ls)	cpilsiB356
CSPI05G09380	Bottle gourd (USVL1VR-Ls)	cpilsiB366
CSPI05G09380	Melon (DHL92) v3.6.1	cpimedB347
CSPI05G09380	Melon (DHL92) v3.6.1	cpimedB350
CSPI05G09380	Melon (DHL92) v3.6.1	cpimedB406
CSPI05G09380	Cucumber (Gy14) v2	cgybcpiB182
CSPI05G09380	Cucumber (Gy14) v2	cgybcpiB226
CSPI05G09380	Cucumber (Gy14) v2	cgybcpiB230
CSPI05G09380	Silver-seed gourd	carcpiB0300
CSPI05G09380	Silver-seed gourd	carcpiB0706
CSPI05G09380	Silver-seed gourd	carcpiB0900
CSPI05G09380	Cucumber (Chinese Long) v3	cpicucB278
CSPI05G09380	Cucumber (Chinese Long) v3	cpicucB292
CSPI05G09380	Watermelon (97103) v2	cpiwmbB393
CSPI05G09380	Watermelon (97103) v2	cpiwmbB412
CSPI05G09380	Watermelon (97103) v2	cpiwmbB432
CSPI05G09380	Wax gourd	cpiwgoB498
CSPI05G09380	Wax gourd	cpiwgoB518
CSPI05G09380	Wild cucumber (PI 183967)	cpicpiB153
CSPI05G09380	Wild cucumber (PI 183967)	cpicpiB175
CSPI05G09380	Cucumber (Gy14) v1	cgycpiB057
CSPI05G09380	Cucumber (Gy14) v1	cgycpiB258
CSPI05G09380	Cucurbita maxima (Rimu)	cmacpiB312
CSPI05G09380	Cucurbita maxima (Rimu)	cmacpiB685
CSPI05G09380	Cucurbita maxima (Rimu)	cmacpiB756
CSPI05G09380	Cucurbita maxima (Rimu)	cmacpiB757
CSPI05G09380	Cucurbita moschata (Rifu)	cmocpiB304
CSPI05G09380	Cucurbita moschata (Rifu)	cmocpiB746
CSPI05G09380	Cucurbita moschata (Rifu)	cmocpiB747
CSPI05G09380	Cucurbita moschata (Rifu)	cmocpiB677
CSPI05G09380	Cucumber (Chinese Long) v2	cpicuB245
CSPI05G09380	Cucumber (Chinese Long) v2	cpicuB235
CSPI05G09380	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G09380	Melon (DHL92) v3.5.1	cpimeB357
CSPI05G09380	Melon (DHL92) v3.5.1	cpimeB360
CSPI05G09380	Melon (DHL92) v3.5.1	cpimeB408
CSPI05G09380	Watermelon (Charleston Gray)	cpiwcgB359
CSPI05G09380	Watermelon (Charleston Gray)	cpiwcgB404
CSPI05G09380	Watermelon (Charleston Gray)	cpiwcgB420
CSPI05G09380	Watermelon (97103) v1	cpiwmB373
CSPI05G09380	Watermelon (97103) v1	cpiwmB399
CSPI05G09380	Watermelon (97103) v1	cpiwmB435