CSPI05G06520 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G06520
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 5841155 .. 5841530 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGGGAGGTTGCAGAAACCACAATGTGGCAGAGGAGATGGTGGAGCCGTGCGGTGCCCGGTCGACGAGGAGATCAGAGTGGCAATGGGAATAATCAATAAAATGAATGGTGGTTGGGGTTTGGTTGTGAAAGGGGAAAAATAAGAGGGAGTAAATTTTGATGATAACAATATGTTTGTTAAGTAGTAGTAATATTGAGAATGTTGGGTATCCAAATATATGTTGATTACTTGAGTTGAAGGTGAAGCATGAAAAGCTTTATAAGTCCCTTTTAAGCAATGAGATCAATCTTGCTCCACCAGACACAATAATTGGGCGTGCTCTCCATGGACTTCCAAATGCATCGTTCTCTCACTTTCACACTAAGAGATAA

mRNA sequence

ATGCATGGGAGGTTGCAGAAACCACAATGTGGCAGAGGAGATGGTGGAGCCGTGCGGTGCCCGGTCGACGAGGAGATCAGAGTGGCAATGGGAATAATCAATAAAATGAATGGTGGTTGGGGTTTGGTGAAGCATGAAAAGCTTTATAAGTCCCTTTTAAGCAATGAGATCAATCTTGCTCCACCAGACACAATAATTGGGCGTGCTCTCCATGGACTTCCAAATGCATCGTTCTCTCACTTTCACACTAAGAGATAA

Coding sequence (CDS)

ATGCATGGGAGGTTGCAGAAACCACAATGTGGCAGAGGAGATGGTGGAGCCGTGCGGTGCCCGGTCGACGAGGAGATCAGAGTGGCAATGGGAATAATCAATAAAATGAATGGTGGTTGGGGTTTGGTGAAGCATGAAAAGCTTTATAAGTCCCTTTTAAGCAATGAGATCAATCTTGCTCCACCAGACACAATAATTGGGCGTGCTCTCCATGGACTTCCAAATGCATCGTTCTCTCACTTTCACACTAAGAGATAA
Homology
[Close]
BLAST of CSPI05G06520 vs. TrEMBL
Match: A0A0A0KR65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G160190 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.2e-44
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MHGRLQKPQCGRGDGGAVRCPVDEEIRVAMGIINKMNGGWGLVKHEKLYKSLLSNEINLA 60
          MHGRL+KPQCGRGDGGAVRCPVDEEIRVAMGIINKMNGGWGLVKHEKLYKSLLSNEINLA
Sbjct: 1  MHGRLEKPQCGRGDGGAVRCPVDEEIRVAMGIINKMNGGWGLVKHEKLYKSLLSNEINLA 60

Query: 61 PPDTIIGRALHGLPNASFSHFHTKR 86
          PPDTIIGRALHGLPNASFSHFHTKR
Sbjct: 61 PPDTIIGRALHGLPNASFSHFHTKR 85

[Close]
BLAST of CSPI05G06520 vs. NCBI nr
Match: gi|700195039|gb|KGN50216.1| (hypothetical protein Csa_5G160190 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 4.6e-44
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MHGRLQKPQCGRGDGGAVRCPVDEEIRVAMGIINKMNGGWGLVKHEKLYKSLLSNEINLA 60
          MHGRL+KPQCGRGDGGAVRCPVDEEIRVAMGIINKMNGGWGLVKHEKLYKSLLSNEINLA
Sbjct: 1  MHGRLEKPQCGRGDGGAVRCPVDEEIRVAMGIINKMNGGWGLVKHEKLYKSLLSNEINLA 60

Query: 61 PPDTIIGRALHGLPNASFSHFHTKR 86
          PPDTIIGRALHGLPNASFSHFHTKR
Sbjct: 61 PPDTIIGRALHGLPNASFSHFHTKR 85

The following BLAST results are available for this feature:
BLAST of CSPI05G06520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G06520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR65_CUCSA3.2e-4498.82Uncharacterized protein OS=Cucumis sativus GN=Csa_5G160190 PE=4 SV=1[more]
BLAST of CSPI05G06520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G06520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195039|gb|KGN50216.1|4.6e-4498.82hypothetical protein Csa_5G160190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G06520.1CSPI05G06520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G06520Csa5G160190Cucumber (Chinese Long) v2cpicuB240
CSPI05G06520CsaV3_5G003930Cucumber (Chinese Long) v3cpicucB285
CSPI05G06520CsGy5G003830Cucumber (Gy14) v2cgybcpiB226
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G06520Melon (DHL92) v3.6.1cpimedB338
CSPI05G06520Melon (DHL92) v3.6.1cpimedB398
CSPI05G06520Melon (DHL92) v3.6.1cpimedB399
CSPI05G06520Cucumber (Gy14) v2cgybcpiB130
CSPI05G06520Cucumber (Gy14) v2cgybcpiB131
CSPI05G06520Silver-seed gourdcarcpiB0208
CSPI05G06520Silver-seed gourdcarcpiB0902
CSPI05G06520Cucumber (Chinese Long) v3cpicucB269
CSPI05G06520Cucumber (Chinese Long) v3cpicucB268
CSPI05G06520Watermelon (97103) v2cpiwmbB349
CSPI05G06520Watermelon (97103) v2cpiwmbB372
CSPI05G06520Watermelon (97103) v2cpiwmbB404
CSPI05G06520Wax gourdcpiwgoB440
CSPI05G06520Wax gourdcpiwgoB481
CSPI05G06520Wild cucumber (PI 183967)cpicpiB115
CSPI05G06520Wild cucumber (PI 183967)cpicpiB116
CSPI05G06520Cucumber (Gy14) v1cgycpiB386
CSPI05G06520Cucumber (Gy14) v1cgycpiB457
CSPI05G06520Cucumber (Gy14) v1cgycpiB487
CSPI05G06520Cucurbita maxima (Rimu)cmacpiB303
CSPI05G06520Cucurbita maxima (Rimu)cmacpiB614
CSPI05G06520Cucurbita maxima (Rimu)cmacpiB853
CSPI05G06520Cucurbita moschata (Rifu)cmocpiB295
CSPI05G06520Cucurbita moschata (Rifu)cmocpiB339
CSPI05G06520Cucurbita moschata (Rifu)cmocpiB606
CSPI05G06520Cucurbita moschata (Rifu)cmocpiB836
CSPI05G06520Cucumber (Chinese Long) v2cpicuB225
CSPI05G06520Cucumber (Chinese Long) v2cpicuB226
CSPI05G06520Melon (DHL92) v3.5.1cpimeB348
CSPI05G06520Melon (DHL92) v3.5.1cpimeB398
CSPI05G06520Melon (DHL92) v3.5.1cpimeB403
CSPI05G06520Watermelon (Charleston Gray)cpiwcgB368
CSPI05G06520Watermelon (Charleston Gray)cpiwcgB379
CSPI05G06520Watermelon (Charleston Gray)cpiwcgB414
CSPI05G06520Watermelon (97103) v1cpiwmB381
CSPI05G06520Watermelon (97103) v1cpiwmB416
CSPI05G06520Watermelon (97103) v1cpiwmB412
CSPI05G06520Cucurbita pepo (Zucchini)cpecpiB176
CSPI05G06520Cucurbita pepo (Zucchini)cpecpiB874
CSPI05G06520Bottle gourd (USVL1VR-Ls)cpilsiB322
CSPI05G06520Bottle gourd (USVL1VR-Ls)cpilsiB379
CSPI05G06520Bottle gourd (USVL1VR-Ls)cpilsiB390