CSPI05G02890 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G02890
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUbiquitin, putative
LocationChr5 : 3366124 .. 3367968 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACGTAAAACCCTCAAACTCATCAAGGAGGCGCCGAGGAAAACTAGAGGATCAAGAAAATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATTACGCTGGAAGTTGAGTCCAGCGACACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTACGTCTTTTTTTTTCCTTCATATTTTTCATTTCTTACTCTATCTATTGTTTATCTTGATTTATGCTGCAAACTCTTCAGGTATTCCCCCCGATCAGCAACGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACTCTGGCCGACTACAACATCCAGAAAGGTATATTTTACTTACATTTTAGGTAGCCTACGAAGTAGACGAGATGAATTTAGCTGAAATCAATACTGTAGACTCGCCTGGTTTTGTTGTTCGTTTTCCTATTCCCTTAGTCTTTGAACGATACTGGAATAGGACTCCGGACCATGAGTTTTGATGAGTTAGTCGTCAATTTTAGAGACGTCAAAGACCGTACTGGTCTTCATCTTAAAATTTTAGAGGCGTTAGTGTTGAATGAATGACATTCTTTGAGATTGGGTGGTTGCTTAGAAATTTCTGTTGGTGTCTGATTGATTTCAATTGCTGTCTTTTATACGAAATTTGTAGTGTCAAGTGGAATGTCATAGAAACATGTGGCTTTTAGAGTTGGCTGATTAGTAATTCAAGGACATTCTTGCACTTTTGCCTATAAATACATGAACTACTTTTTGAATGAACTATAGTTTTCTTTGCGTTCTCATTATTAGATTAAATGTACGATATCGTTTATGTTTGTTCAGAGTCAACACTGCATTTGGTTCTAAGGCTTCGTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATATAACCAGGACAAGATGATCTGCCGCAAGTGAGTTATTTTTTGTTCTTGGTATTTTCTCATTCTAGGACTGCTGATATATCTTATCTTACATGAACTGATACAACTAAGATTTCAACCTGACTGGTCTGTTCAGTTTTTTAATTTCCTTTTTTCTGTTTTCTGGTTTGAACTTTGGTTTGGTTTGATTTGAATAACTGAACGAATAATTTCATTTCAGTTGGGAAAATTTTAATAGTAAACTGAAAATCCAATGTGTTTAATTTTTTTCTTATTATCAGTTTGATTTTGTTGTAACATGAAGATTTTCACGCCGGACAGAAATTGGCCAAGCCGTATCAGAATGAGCTTACTCCCAATTGAAACTCTTGAACTTTGATACTTTTTATAAAAAGTTTGAACAATAACTTATTTTTCATTTTGGAAATTGATTTTTTTGGGTGTGATATGGTTTGACCTCCCGTCCAGAACAGAGAATGTTTTTCTAAAGTTTTTTCTTCTTTCTTTGGCACACAGATGTTATGCACGCCTGCATCCCCGTGCTGTCAACTGCCGTAAGAAGAAATGTGGTCACAGCAATCAGGTAAAAGGATATCAACACTGATAACTCGGTTGATTTCATTCTTTTCTAAAATCGTGTGCATGATGTGCCTGCCAGTTTTGGAATTTTATTTTGGTTTACCGTTGGATTGAATGTGATTCGTTGAATTGCAGCTGAGGCCAAAGAAGAAAATCAAGTAGACGGCTGATCTTAAGGATGAAATGTTGTGGTTCCTTATATATCACTTCAATGCGCTCTGTAGAGTCTTAGATTATGTGCCCGTTTGTTAAGGATTCAATTTTGTAGTTCGGACTTCAGAACTTTTGTTGCATTACATTGATTATGAGATGGTGTTGTTTTCTTTTTGAATCTATTTTATTGATGAAACGTGTTAATTTGTTTTT

mRNA sequence

ATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATTACGCTGGAAGTTGAGTCCAGCGACACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCCGATCAGCAACGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACTCTGGCCGACTACAACATCCAGAAAGAGTCAACACTGCATTTGGTTCTAAGGCTTCGTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATATAACCAGGACAAGATGATCTGCCGCAAATGTTATGCACGCCTGCATCCCCGTGCTGTCAACTGCCGTAAGAAGAAATGTGGTCACAGCAATCAGCTGAGGCCAAAGAAGAAAATCAAGTAG

Coding sequence (CDS)

ATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATTACGCTGGAAGTTGAGTCCAGCGACACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCCGATCAGCAACGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACTCTGGCCGACTACAACATCCAGAAAGAGTCAACACTGCATTTGGTTCTAAGGCTTCGTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATATAACCAGGACAAGATGATCTGCCGCAAATGTTATGCACGCCTGCATCCCCGTGCTGTCAACTGCCGTAAGAAGAAATGTGGTCACAGCAATCAGCTGAGGCCAAAGAAGAAAATCAAGTAG
Homology
[Close]
BLAST of CSPI05G02890 vs. Swiss-Prot
Match: RL40_NICSY (Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=2 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 9.9e-67
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. Swiss-Prot
Match: RL40A_ARATH (Ubiquitin-60S ribosomal protein L40-1 OS=Arabidopsis thaliana GN=RPL40A PE=1 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-66
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. Swiss-Prot
Match: RL40A_ORYSJ (Ubiquitin-60S ribosomal protein L40-1 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-66
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. Swiss-Prot
Match: RL40B_ARATH (Ubiquitin-60S ribosomal protein L40-2 OS=Arabidopsis thaliana GN=RPL40B PE=1 SV=2)

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-66
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. Swiss-Prot
Match: RL40B_ORYSJ (Ubiquitin-60S ribosomal protein L40-2 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-2 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-66
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. TrEMBL
Match: A0A078D9Z2_BRANA (BnaA03g16540D protein OS=Brassica napus GN=BnaC04g09150D PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. TrEMBL
Match: A0A0D2PK61_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G153300 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. TrEMBL
Match: V4S7D9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013083mg PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. TrEMBL
Match: A0A0B0P7T3_GOSAR (Ubiquitin-60S ribosomal L40 OS=Gossypium arboreum GN=F383_00747 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. TrEMBL
Match: F4YF91_CAMSI (Ubiquitin fusion protein OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. TAIR10
Match: AT3G52590.1 (AT3G52590.1 ubiquitin extension protein 1)

HSP 1 Score: 253.1 bits (645), Expect = 9.5e-68
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. TAIR10
Match: AT2G36170.1 (AT2G36170.1 Ubiquitin supergroup;Ribosomal protein L40e)

HSP 1 Score: 253.1 bits (645), Expect = 9.5e-68
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. TAIR10
Match: AT5G20620.1 (AT5G20620.1 ubiquitin 4)

HSP 1 Score: 150.2 bits (378), Expect = 8.7e-37
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61 IQKESTLHLVLRLRGGI 78
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77

[Close]
BLAST of CSPI05G02890 vs. TAIR10
Match: AT1G65350.1 (AT1G65350.1 ubiquitin 13)

HSP 1 Score: 150.2 bits (378), Expect = 8.7e-37
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61 IQKESTLHLVLRLRGGI 78
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77

[Close]
BLAST of CSPI05G02890 vs. TAIR10
Match: AT4G05320.2 (AT4G05320.2 polyubiquitin 10)

HSP 1 Score: 150.2 bits (378), Expect = 8.7e-37
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61 IQKESTLHLVLRLRGGI 78
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77

[Close]
BLAST of CSPI05G02890 vs. NCBI nr
Match: gi|821324966|ref|NP_001295699.1| (ubiquitin-60S ribosomal protein L40-like [Jatropha curcas])

HSP 1 Score: 255.0 bits (650), Expect = 7.1e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

[Close]
BLAST of CSPI05G02890 vs. NCBI nr
Match: gi|720049975|ref|XP_010271616.1| (PREDICTED: ubiquitin-60S ribosomal protein L40-like [Nelumbo nucifera])

HSP 1 Score: 255.0 bits (650), Expect = 7.1e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 24  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 83

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 84  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 143

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 144 LRPKKKIK 151

[Close]
BLAST of CSPI05G02890 vs. NCBI nr
Match: gi|590674407|ref|XP_007039159.1| (Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao])

HSP 1 Score: 255.0 bits (650), Expect = 7.1e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 24  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 83

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 84  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 143

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 144 LRPKKKIK 151

[Close]
BLAST of CSPI05G02890 vs. NCBI nr
Match: gi|595808385|ref|XP_007202754.1| (hypothetical protein PRUPE_ppa013349mg [Prunus persica])

HSP 1 Score: 254.6 bits (649), Expect = 9.2e-65
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKK+K
Sbjct: 121 LRPKKKVK 128

[Close]
BLAST of CSPI05G02890 vs. NCBI nr
Match: gi|302393724|sp|P49636.2|RL40_NICSY (RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains: RecName: Full=Ubiquitin; Contains: RecName: Full=60S ribosomal protein L40; AltName: Full=CEP52; Flags: Precursor)

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-64
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQ 120

Query: 121 LRPKKKIK 129
           LRPKKKIK
Sbjct: 121 LRPKKKIK 128

The following BLAST results are available for this feature:
BLAST of CSPI05G02890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL40_NICSY9.9e-6799.22Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=2 S... [more]
RL40A_ARATH1.7e-6699.22Ubiquitin-60S ribosomal protein L40-1 OS=Arabidopsis thaliana GN=RPL40A PE=1 SV=... [more]
RL40A_ORYSJ1.7e-6699.22Ubiquitin-60S ribosomal protein L40-1 OS=Oryza sativa subsp. japonica GN=Ub-CEP5... [more]
RL40B_ARATH1.7e-6699.22Ubiquitin-60S ribosomal protein L40-2 OS=Arabidopsis thaliana GN=RPL40B PE=1 SV=... [more]
RL40B_ORYSJ1.7e-6699.22Ubiquitin-60S ribosomal protein L40-2 OS=Oryza sativa subsp. japonica GN=Ub-CEP5... [more]
BLAST of CSPI05G02890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A078D9Z2_BRANA4.9e-65100.00BnaA03g16540D protein OS=Brassica napus GN=BnaC04g09150D PE=4 SV=1[more]
A0A0D2PK61_GOSRA4.9e-65100.00Uncharacterized protein OS=Gossypium raimondii GN=B456_006G153300 PE=4 SV=1[more]
V4S7D9_9ROSI4.9e-65100.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013083mg PE=4 SV=1[more]
A0A0B0P7T3_GOSAR4.9e-65100.00Ubiquitin-60S ribosomal L40 OS=Gossypium arboreum GN=F383_00747 PE=4 SV=1[more]
F4YF91_CAMSI4.9e-65100.00Ubiquitin fusion protein OS=Camellia sinensis PE=2 SV=1[more]
BLAST of CSPI05G02890 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52590.19.5e-6899.22 ubiquitin extension protein 1[more]
AT2G36170.19.5e-6899.22 Ubiquitin supergroup;Ribosomal protein L40e[more]
AT5G20620.18.7e-3798.70 ubiquitin 4[more]
AT1G65350.18.7e-3798.70 ubiquitin 13[more]
AT4G05320.28.7e-3798.70 polyubiquitin 10[more]
BLAST of CSPI05G02890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|821324966|ref|NP_001295699.1|7.1e-65100.00ubiquitin-60S ribosomal protein L40-like [Jatropha curcas][more]
gi|720049975|ref|XP_010271616.1|7.1e-65100.00PREDICTED: ubiquitin-60S ribosomal protein L40-like [Nelumbo nucifera][more]
gi|590674407|ref|XP_007039159.1|7.1e-65100.00Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao][more]
gi|595808385|ref|XP_007202754.1|9.2e-6599.22hypothetical protein PRUPE_ppa013349mg [Prunus persica][more]
gi|302393724|sp|P49636.2|RL40_NICSY1.6e-6499.22RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains: RecName: Full=Ubiqu... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G02890.1CSPI05G02890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G02890Cla004868Watermelon (97103) v1cpiwmB416
CSPI05G02890Csa5G139110Cucumber (Chinese Long) v2cpicuB240
CSPI05G02890MELO3C005912Melon (DHL92) v3.5.1cpimeB348
CSPI05G02890ClCG01G000160Watermelon (Charleston Gray)cpiwcgB379
CSPI05G02890MELO3C005912.2Melon (DHL92) v3.6.1cpimedB338
CSPI05G02890CsaV3_5G000200Cucumber (Chinese Long) v3cpicucB285
CSPI05G02890Cla97C01G000170Watermelon (97103) v2cpiwmbB349
CSPI05G02890Bhi12G000593Wax gourdcpiwgoB456
CSPI05G02890Cucsa.202380Cucumber (Gy14) v1cgycpiB322
CSPI05G02890CmaCh02G011430Cucurbita maxima (Rimu)cmacpiB618
CSPI05G02890CmaCh18G013370Cucurbita maxima (Rimu)cmacpiB425
CSPI05G02890CmaCh16G000250Cucurbita maxima (Rimu)cmacpiB346
CSPI05G02890CmoCh18G013700Cucurbita moschata (Rifu)cmocpiB414
CSPI05G02890CmoCh16G000290Cucurbita moschata (Rifu)cmocpiB337
CSPI05G02890CmoCh02G011740Cucurbita moschata (Rifu)cmocpiB611
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G02890Cucurbita pepo (Zucchini)cpecpiB189
CSPI05G02890Cucurbita pepo (Zucchini)cpecpiB624
CSPI05G02890Cucurbita pepo (Zucchini)cpecpiB733
CSPI05G02890Bottle gourd (USVL1VR-Ls)cpilsiB382
CSPI05G02890Melon (DHL92) v3.6.1cpimedB394
CSPI05G02890Cucumber (Gy14) v2cgybcpiB126
CSPI05G02890Cucumber (Gy14) v2cgybcpiB226
CSPI05G02890Silver-seed gourdcarcpiB0543
CSPI05G02890Silver-seed gourdcarcpiB0610
CSPI05G02890Cucumber (Chinese Long) v3cpicucB263
CSPI05G02890Watermelon (97103) v2cpiwmbB399
CSPI05G02890Wild cucumber (PI 183967)cpicpiB110
CSPI05G02890Cucumber (Gy14) v1cgycpiB387
CSPI05G02890Cucurbita maxima (Rimu)cmacpiB298
CSPI05G02890Cucurbita moschata (Rifu)cmocpiB257
CSPI05G02890Cucurbita moschata (Rifu)cmocpiB288
CSPI05G02890Cucumber (Chinese Long) v2cpicuB221
CSPI05G02890Melon (DHL92) v3.5.1cpimeB399
CSPI05G02890Watermelon (97103) v1cpiwmB406