CSPI05G02520 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G02520
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 3155098 .. 3155409 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGTGACACTGAGCGTCTGCCCCAAGTGCACCCTGCAACAGACGCACGCCTGTCTCGCTTCCTGGCTTGCGTCTGCTACATGCTTAGAGCCCAGAGGTTGGCACGGTTGCCTTAGTGTTGTCTGTCGTGCTACATCCCATGCCCTCCTATATAGGTGCTTGTCTTGTTTGACCTTCCTCAAAGCCAAGGCACCTGCCGTCTGTCTCGCCACTGACTTGGTCTATTCCAAGTTCATTGACCAAGTCTTCTGGCAATCAACCATCCGTCGATGGTCATTCTTTCTCCTATGGCTCCTAGCCGTTAGTTAA

mRNA sequence

ATGACCGTGACACTGAGCGTCTGCCCCAAGTGCACCCTGCAACAGACGCACGCCTGTCTCGCTTCCTGGCTTGCGTCTGCTACATGCTTAGAGCCCAGAGGTTGGCACGGTTGCCTTAGTGTTGTCTGTCGTGCTACATCCCATGCCCTCCTATATAGGTGCTTGTCTTGTTTGACCTTCCTCAAAGCCAAGGCACCTGCCGTCTGTCTCGCCACTGACTTGGTCTATTCCAAGTTCATTGACCAAGTCTTCTGGCAATCAACCATCCGTCGATGGTCATTCTTTCTCCTATGGCTCCTAGCCGTTAGTTAA

Coding sequence (CDS)

ATGACCGTGACACTGAGCGTCTGCCCCAAGTGCACCCTGCAACAGACGCACGCCTGTCTCGCTTCCTGGCTTGCGTCTGCTACATGCTTAGAGCCCAGAGGTTGGCACGGTTGCCTTAGTGTTGTCTGTCGTGCTACATCCCATGCCCTCCTATATAGGTGCTTGTCTTGTTTGACCTTCCTCAAAGCCAAGGCACCTGCCGTCTGTCTCGCCACTGACTTGGTCTATTCCAAGTTCATTGACCAAGTCTTCTGGCAATCAACCATCCGTCGATGGTCATTCTTTCTCCTATGGCTCCTAGCCGTTAGTTAA
Homology
[Close]
BLAST of CSPI05G02520 vs. TrEMBL
Match: A0A0A0KJ89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G129310 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MTVTLSVCPKCTLQQTHACLASWLASATCLEPRGWHGCLSVVCRATSHALLYRCLSCLTF 60
           MTVTLSVCPKCTLQQTHACLASWLASATCLEPRGWHGCLSVVCRATSHALLYRCLSCLTF
Sbjct: 1   MTVTLSVCPKCTLQQTHACLASWLASATCLEPRGWHGCLSVVCRATSHALLYRCLSCLTF 60

Query: 61  LKAKAPAVCLATDLVYSKFIDQVFWQSTIRRWSFFLLWLLA 102
           LKAKAPAVCLATDLVYSKFIDQVFWQSTIRRWSFFLLWLLA
Sbjct: 61  LKAKAPAVCLATDLVYSKFIDQVFWQSTIRRWSFFLLWLLA 101

[Close]
BLAST of CSPI05G02520 vs. NCBI nr
Match: gi|700194618|gb|KGN49795.1| (hypothetical protein Csa_5G129310 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.6e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

Query: 1   MTVTLSVCPKCTLQQTHACLASWLASATCLEPRGWHGCLSVVCRATSHALLYRCLSCLTF 60
           MTVTLSVCPKCTLQQTHACLASWLASATCLEPRGWHGCLSVVCRATSHALLYRCLSCLTF
Sbjct: 1   MTVTLSVCPKCTLQQTHACLASWLASATCLEPRGWHGCLSVVCRATSHALLYRCLSCLTF 60

Query: 61  LKAKAPAVCLATDLVYSKFIDQVFWQSTIRRWSFFLLWLLA 102
           LKAKAPAVCLATDLVYSKFIDQVFWQSTIRRWSFFLLWLLA
Sbjct: 61  LKAKAPAVCLATDLVYSKFIDQVFWQSTIRRWSFFLLWLLA 101

The following BLAST results are available for this feature:
BLAST of CSPI05G02520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G02520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ89_CUCSA1.1e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G129310 PE=4 SV=1[more]
BLAST of CSPI05G02520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G02520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194618|gb|KGN49795.1|1.6e-51100.00hypothetical protein Csa_5G129310 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G02520.1CSPI05G02520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G02520Csa5G129310Cucumber (Chinese Long) v2cpicuB240
CSPI05G02520CsaV3_5G018700Cucumber (Chinese Long) v3cpicucB287
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G02520Watermelon (97103) v2cpiwmbB350
CSPI05G02520Wax gourdcpiwgoB441
CSPI05G02520Cucumber (Gy14) v1cgycpiB552
CSPI05G02520Cucurbita maxima (Rimu)cmacpiB307
CSPI05G02520Cucurbita maxima (Rimu)cmacpiB734
CSPI05G02520Cucurbita moschata (Rifu)cmocpiB299
CSPI05G02520Cucurbita moschata (Rifu)cmocpiB727
CSPI05G02520Melon (DHL92) v3.5.1cpimeB352
CSPI05G02520Watermelon (Charleston Gray)cpiwcgB380
CSPI05G02520Watermelon (97103) v1cpiwmB417
CSPI05G02520Cucurbita pepo (Zucchini)cpecpiB180
CSPI05G02520Cucurbita pepo (Zucchini)cpecpiB418
CSPI05G02520Bottle gourd (USVL1VR-Ls)cpilsiB323
CSPI05G02520Melon (DHL92) v3.6.1cpimedB342
CSPI05G02520Cucumber (Gy14) v2cgybcpiB227
CSPI05G02520Silver-seed gourdcarcpiB0516
CSPI05G02520Silver-seed gourdcarcpiB0862