CSPI05G02390 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G02390
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RRNA intron-encoded homing endonuclease
Location	Chr5 : 3051794 .. 3051994 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAATAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

mRNA sequence

ATGAACAATAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

Coding sequence (CDS)

ATGAACAATAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

Homology

[Close]

BLAST of CSPI05G02390 vs. TrEMBL
Match: A0A0A0LDF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G512980 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.3e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 4   RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
           RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 50  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 109

Query: 64  PAA 67
           PAA
Sbjct: 110 PAA 112

[Close]

BLAST of CSPI05G02390 vs. TrEMBL
Match: R7VFH5_CAPTE (Uncharacterized protein (Fragment) OS=Capitella teleta GN=CAPTEDRAFT_143211 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 4  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
          RRSDTVLVSTINDADQG ADVA RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 1  RRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 60

Query: 64 PAA 67
          PAA
Sbjct: 61 PAA 63

[Close]

BLAST of CSPI05G02390 vs. TrEMBL
Match: A0A0J5QQS8_9BACI (Uncharacterized protein OS=Bacillus pseudalcaliphilus GN=AB990_21245 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 4  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
          RRSDTVLVSTINDADQG ADVA RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 5  RRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 64

Query: 64 PAA 67
          PAA
Sbjct: 65 PAA 67

[Close]

BLAST of CSPI05G02390 vs. TrEMBL
Match: A0A0M3DL41_9FIRM (Uncharacterized protein OS=Paraclostridium benzoelyticum GN=VN21_05015 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 4  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
          RRSDTVLVSTINDADQG ADVA RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 5  RRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 64

Query: 64 PAA 67
          PAA
Sbjct: 65 PAA 67

[Close]

BLAST of CSPI05G02390 vs. TrEMBL
Match: Q9AY32_ORYSA (RRNA intron-encoded homing endonuclease (Fragment) OS=Oryza sativa PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 4  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
          RRSDTVLVSTINDADQG ADVA RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 4  RRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63

Query: 64 PAA 67
          PAA
Sbjct: 64 PAA 66

[Close]

BLAST of CSPI05G02390 vs. NCBI nr
Match: gi|972464968|ref|WP_059051718.1| (MULTISPECIES: hypothetical protein [Bacteria])

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 4  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
          RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 5  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 64

Query: 64 PAA 67
          PAA
Sbjct: 65 PAA 67

[Close]

BLAST of CSPI05G02390 vs. NCBI nr
Match: gi|700202973|gb|KGN58106.1| (hypothetical protein Csa_3G512980 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 4   RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
           RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 50  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 109

Query: 64  PAA 67
           PAA
Sbjct: 110 PAA 112

[Close]

BLAST of CSPI05G02390 vs. NCBI nr
Match: gi|443727870|gb|ELU14430.1| (hypothetical protein CAPTEDRAFT_143211, partial [Capitella teleta])

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 4  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
          RRSDTVLVSTINDADQG ADVA RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 1  RRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 60

Query: 64 PAA 67
          PAA
Sbjct: 61 PAA 63

[Close]

BLAST of CSPI05G02390 vs. NCBI nr
Match: gi|757608686|ref|WP_042854723.1| (hypothetical protein [Staphylococcus aureus])

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 4  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
          RRSDTVLVSTINDADQG ADVA RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 5  RRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 64

Query: 64 PAA 67
          PAA
Sbjct: 65 PAA 67

[Close]

BLAST of CSPI05G02390 vs. NCBI nr
Match: gi|821175286|ref|WP_046822334.1| (MULTISPECIES: hypothetical protein [Firmicutes])

HSP 1 Score: 121.3 bits (303), Expect = 6.3e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 1


Query: 4  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
          RRSDTVLVSTINDADQG ADVA RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 5  RRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 64

Query: 64 PAA 67
          PAA
Sbjct: 65 PAA 67

The following BLAST results are available for this feature:

BLAST of CSPI05G02390 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G02390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDF7_CUCSA	2.3e-26	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G512980 PE=4 SV=1	[more]
R7VFH5_CAPTE	3.4e-25	96.83	Uncharacterized protein (Fragment) OS=Capitella teleta GN=CAPTEDRAFT_143211 PE=4...	[more]
A0A0J5QQS8_9BACI	4.4e-25	96.83	Uncharacterized protein OS=Bacillus pseudalcaliphilus GN=AB990_21245 PE=4 SV=1	[more]
A0A0M3DL41_9FIRM	4.4e-25	96.83	Uncharacterized protein OS=Paraclostridium benzoelyticum GN=VN21_05015 PE=4 SV=1	[more]
Q9AY32_ORYSA	4.4e-25	96.83	RRNA intron-encoded homing endonuclease (Fragment) OS=Oryza sativa PE=2 SV=1	[more]

BLAST of CSPI05G02390 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G02390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|972464968\|ref\|WP_059051718.1\|	3.4e-26	100.00	MULTISPECIES: hypothetical protein [Bacteria]	[more]
gi\|700202973\|gb\|KGN58106.1\|	3.4e-26	100.00	hypothetical protein Csa_3G512980 [Cucumis sativus]	[more]
gi\|443727870\|gb\|ELU14430.1\|	4.9e-25	96.83	hypothetical protein CAPTEDRAFT_143211, partial [Capitella teleta]	[more]
gi\|757608686\|ref\|WP_042854723.1\|	4.9e-25	96.83	hypothetical protein [Staphylococcus aureus]	[more]
gi\|821175286\|ref\|WP_046822334.1\|	6.3e-25	96.83	MULTISPECIES: hypothetical protein [Firmicutes]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004519	endonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G02390.1	CSPI05G02390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34410	FAMILY NOT NAMED	coord: 4..66 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G02390	Cucurbita moschata (Rifu)	cmocpiB299
CSPI05G02390	Cucurbita moschata (Rifu)	cmocpiB727
CSPI05G02390	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G02390	Melon (DHL92) v3.5.1	cpimeB352
CSPI05G02390	Watermelon (Charleston Gray)	cpiwcgB380
CSPI05G02390	Watermelon (97103) v1	cpiwmB417
CSPI05G02390	Cucurbita pepo (Zucchini)	cpecpiB180
CSPI05G02390	Cucurbita pepo (Zucchini)	cpecpiB418
CSPI05G02390	Bottle gourd (USVL1VR-Ls)	cpilsiB323
CSPI05G02390	Melon (DHL92) v3.6.1	cpimedB342
CSPI05G02390	Cucumber (Gy14) v2	cgybcpiB227
CSPI05G02390	Silver-seed gourd	carcpiB0516
CSPI05G02390	Silver-seed gourd	carcpiB0862
CSPI05G02390	Cucumber (Chinese Long) v3	cpicucB287
CSPI05G02390	Watermelon (97103) v2	cpiwmbB350
CSPI05G02390	Wax gourd	cpiwgoB441
CSPI05G02390	Cucumber (Gy14) v1	cgycpiB552
CSPI05G02390	Cucurbita maxima (Rimu)	cmacpiB307
CSPI05G02390	Cucurbita maxima (Rimu)	cmacpiB734