CSPI05G02380 (gene) Wild cucumber (PI 183967)

NameCSPI05G02380
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnplaced genomic scaffold PAXINscaffold_121, whole genome shotgun sequence
LocationChr5 : 3050618 .. 3051717 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAACTCGCGTTGACTACGTCCCTGCCCTCTGTACACACTGCCCATCACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTTCGCTGCCTGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAAACATCAAACGACCCGCGAACGCGTTTACAAAACAAACCGACCGCGTCGGGGGCGACTGGGAGGCGAGCATGCTGTTTTCTTGCCTTCCTCCTCTCCCTCCCAGCGCGTCTAAAACAAAACCCCGGCGTAGGTCGGGCCAAGGAACTTGAAATGAATTCGCCCGCCCCTCGTTCTGGCCTCGGTGGTGCAGGGGGCGGAGCATTCTGGTCGTATTACTCACAACGACTCTCGGCAACGGATATCTTGGGTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGGATCCCGTGAACCACCGAGTATTTGAACACAAGTTGCGCTCGGAGCCTTCTGGCCGAGGGCATGTCTGCCTGGGCGTCACGCATCGTTGTCCTCACCCACACAACTTCCCCGCCCACCGTGTCGGCTCGTTGTGCGGGCGAGGGCACACACTGGCCTACCGTGCGCATCGTCGTGCGGATGGCTTAAATTTGAGTCCTCGACGCTCGTTGTCGCGACACTACGGTGGTTGA

mRNA sequence

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAACTCGCGTTGACTACGTCCCTGCCCTCTGTACACACTGCCCATCACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAAACATCAAACGACCCGCGAACGCGTTTACAAAACAAACCGACCGCGTCGGGGGCGACTGGGAGGCGAGCATGCTGTTTTCTTGCCTTCCTCCTCTCCCTCCCAGCGCGTCTAAAACAAAACCCCGGCGTAGGTCGGGCCAAGGAACTTGAAATGAATTCGCCCGCCCCTCGTTCTGGCCTCGGTGGTGCAGGGGGCGGAGCATTCTGGTCGTATTACTCACAACGACTCTCGGCAACGGATATCTTGGGTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGGATCCCGTGAACCACCGAGTATTTGAACACAAGTTGCGCTCGGAGCCTTCTGGCCGAGGGCATGTCTGCCTGGGCGTCACGCATCGTTGTCCTCACCCACACAACTTCCCCGCCCACCGTGTCGGCTCGTTGTGCGGGCGAGGGCACACACTGGCCTACCGTGCGCATCGTCGTGCGGATGGCTTAAATTTGAGTCCTCGACGCTCGTTGTCGCGACACTACGGTGGTTGA

Coding sequence (CDS)

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAACTCGCGTTGACTACGTCCCTGCCCTCTGTACACACTGCCCATCACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTGAACCTGCGGAAGGATCATTGTCGATGCCTAAAACATCAAACGACCCGCGAACGCGTTTACAAAACAAACCGACCGCGTCGGGGGCGACTGGGAGGCGAGCATGCTGTTTTCTTGCCTTCCTCCTCTCCCTCCCAGCGCGTCTAAAACAAAACCCCGGCGTAGGTCGGGCCAAGGAACTTGAAATGAATTCGCCCGCCCCTCGTTCTGGCCTCGGTGGTGCAGGGGGCGGAGCATTCTGGTCGTATTACTCACAACGACTCTCGGCAACGGATATCTTGGGTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGGATCCCGTGAACCACCGAGTATTTGAACACAAGTTGCGCTCGGAGCCTTCTGGCCGAGGGCATGTCTGCCTGGGCGTCACGCATCGTTGTCCTCACCCACACAACTTCCCCGCCCACCGTGTCGGCTCGTTGTGCGGGCGAGGGCACACACTGGCCTACCGTGCGCATCGTCGTGCGGATGGCTTAAATTTGAGTCCTCGACGCTCGTTGTCGCGACACTACGGTGGTTGA
BLAST of CSPI05G02380 vs. TrEMBL
Match: A0A0A0LPG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252100 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 111/193 (57.51%), Postives = 120/193 (62.18%), Query Frame = 1

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVCDALRCSGPHARYTDVFNESIALADR 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE+                    IA+   
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEI--------------------IAIV-- 60

Query: 61  PGSLQLLVFNEEFLVSASHQLALTTSLPSVHTAHHTARR-SYRLNGPVKCSDRGDVGGEP 120
            G  + +    E      +  AL T  PS+     +      R  G  + S      GEP
Sbjct: 61  -GLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEP 120

Query: 121 AEGSLSMPKTSNDPRTRLQNKPTASGATGRRACCFLAFLLSLPARLKQNPGVGRAKELEM 180
           AEGSLSMPKTSNDPRTRLQNKPTASGA GRRA   LAFLL LPARLKQN GVGRAKELEM
Sbjct: 121 AEGSLSMPKTSNDPRTRLQNKPTASGAMGRRARSLLAFLLPLPARLKQNTGVGRAKELEM 170

Query: 181 NSPAPRS-GLGGA 192
           NSPAP S G+ GA
Sbjct: 181 NSPAPPSLGVRGA 170

BLAST of CSPI05G02380 vs. TrEMBL
Match: A0A0D2ZQ56_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.9e-37
Identity = 99/166 (59.64%), Postives = 103/166 (62.05%), Query Frame = 1

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVCDALRCSGPHARYTDVFNESIALADR 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSY  VCDALRCSGPHARYTDVFNE       
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSY--VCDALRCSGPHARYTDVFNEFTPWPTG 60

Query: 61  PGSLQLLVFNEEFLVSASHQLALTTSLPSVHTAHHTARRSYRLNGPVKCSDRGDVG---- 120
           P             VSASHQLALTTSLP V    HTARR YRLN PVKCSDRGD+G    
Sbjct: 61  P-------------VSASHQLALTTSLPFV----HTARRPYRLNDPVKCSDRGDMGSSPS 120

Query: 121 -----------------------GEPAEGSLSMP--KTSNDPRTRL 138
                                  GEPAEGSLS P  +T+ +  T L
Sbjct: 121 ATSREVHYTLSFRGRRSRNKVSVGEPAEGSLSYPINRTTENDETSL 147

BLAST of CSPI05G02380 vs. TrEMBL
Match: A0A0L9UDJ6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g102600 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.3e-26
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 1

Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVCDALRCSGPHARYTDVFNESIALADR 60
          MGGGAWPFLVGGAICLVNSVNERDLSLL SY EVCDALRCSGPHARYT VFNESIALADR
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEVCDALRCSGPHARYTYVFNESIALADR 60

Query: 61 PG 63
          PG
Sbjct: 61 PG 62

BLAST of CSPI05G02380 vs. TrEMBL
Match: L1IHC2_GUITH (Uncharacterized protein OS=Guillardia theta CCMP2712 GN=GUITHDRAFT_77544 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.1e-25
Identity = 74/116 (63.79%), Postives = 78/116 (67.24%), Query Frame = 1

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEV-----CDALRCSGPHARYTDVFNESI 60
           MGGGAWPFLVGG ICLVNSVNERDLSLLTS A +          C  P  +      +  
Sbjct: 1   MGGGAWPFLVGGVICLVNSVNERDLSLLTSIANIDWRGLLRGTICLDPEPKGLGKLVKVH 60

Query: 61  ALADRPGSLQLLVFNEEFLVSASHQLALTTSLPSVHTAHHTARRSYRLNGPVKCSD 112
              DR   LQLL+FNEEFLVSASHQLAL TSLP V    HTARRSYRLNGPVK SD
Sbjct: 61  RDGDR--LLQLLIFNEEFLVSASHQLALITSLPFV----HTARRSYRLNGPVKSSD 110

BLAST of CSPI05G02380 vs. TrEMBL
Match: M1BN45_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019038 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.1e-25
Identity = 108/295 (36.61%), Postives = 129/295 (43.73%), Query Frame = 1

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVC-DALRCSGPHARYTDVFNESIALAD 60
           MGGGAWPFLVGG ICL+ ++    + L       C  + R     A  +   N+ I  +D
Sbjct: 61  MGGGAWPFLVGGMICLIIAI----VGLQRGIPSNCGSSARVDYVPALCSYRLNDPIRCSD 120

Query: 61  RPGSLQLLVFNEEFLVSASHQLALTTSLPSVHTAHHTARRSYRLNGPVKCSDRGDVGGEP 120
                           S    L  TTS     T     RRS       K S      GEP
Sbjct: 121 H---------------SDVGGLLPTTSREVHRTLSFRGRRSRN-----KIS-----VGEP 180

Query: 121 AEGSLSMPKTSNDPRTRLQNKPTASGATGRRACCFLAFLLSLPARLKQNPGVGRAKELEM 180
           AEG LS P   NDPRTR ++        G             P+R +Q     RA+    
Sbjct: 181 AEGILSKPAKQNDPRTRFKHLGETRSRRG-------------PSRPEQ-----RAE---- 240

Query: 181 NSPAPRSGLGGAGGGAFWSYYSQRLSATDILGLASMKNVAKCDTWCELQDPVNHRVFEHK 240
                         G    +  + +SA DIL L SMKN+  CDTWCEL +PVNHRVFE K
Sbjct: 241 --------------GRVLLFKHKPVSAMDILALTSMKNILICDTWCELYNPVNHRVFERK 283

Query: 241 LRSEPSGRGHVCLGVTHRCPHPHNFPAHRVGSLCGRGHTLAYRAHRRADGLNLSP 295
           LR +P GRG+VCLGVTHR          RVGS C  G         RA GLN+SP
Sbjct: 301 LRPKPLGRGYVCLGVTHRVTSRTPQGMARVGS-CPPG------LPERAAGLNVSP 283

BLAST of CSPI05G02380 vs. NCBI nr
Match: gi|700206742|gb|KGN61861.1| (hypothetical protein Csa_2G252100 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 5.4e-39
Identity = 111/193 (57.51%), Postives = 120/193 (62.18%), Query Frame = 1

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVCDALRCSGPHARYTDVFNESIALADR 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE+                    IA+   
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEI--------------------IAIV-- 60

Query: 61  PGSLQLLVFNEEFLVSASHQLALTTSLPSVHTAHHTARR-SYRLNGPVKCSDRGDVGGEP 120
            G  + +    E      +  AL T  PS+     +      R  G  + S      GEP
Sbjct: 61  -GLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRGRRSRNKVSVGEP 120

Query: 121 AEGSLSMPKTSNDPRTRLQNKPTASGATGRRACCFLAFLLSLPARLKQNPGVGRAKELEM 180
           AEGSLSMPKTSNDPRTRLQNKPTASGA GRRA   LAFLL LPARLKQN GVGRAKELEM
Sbjct: 121 AEGSLSMPKTSNDPRTRLQNKPTASGAMGRRARSLLAFLLPLPARLKQNTGVGRAKELEM 170

Query: 181 NSPAPRS-GLGGA 192
           NSPAP S G+ GA
Sbjct: 181 NSPAPPSLGVRGA 170

BLAST of CSPI05G02380 vs. NCBI nr
Match: gi|920697603|gb|KOM40828.1| (hypothetical protein LR48_Vigan04g102600 [Vigna angularis])

HSP 1 Score: 126.3 bits (316), Expect = 9.0e-26
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 1

Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVCDALRCSGPHARYTDVFNESIALADR 60
          MGGGAWPFLVGGAICLVNSVNERDLSLL SY EVCDALRCSGPHARYT VFNESIALADR
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEVCDALRCSGPHARYTYVFNESIALADR 60

Query: 61 PG 63
          PG
Sbjct: 61 PG 62

BLAST of CSPI05G02380 vs. NCBI nr
Match: gi|1004041341|ref|WP_061496620.1| (hypothetical protein [Legionella pneumophila])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 1

Query: 126 MPKTSNDPRTRLQNKPTASGATGRRACCFLAFLLSLPARLKQNPGVGRAKELEMNSPAPR 185
           MPKTSNDPRTRLQNKPTASGA GRRA   LAFLL LPARLKQN GVGRAKELEMNSPAPR
Sbjct: 1   MPKTSNDPRTRLQNKPTASGAMGRRARSLLAFLLPLPARLKQNTGVGRAKELEMNSPAPR 60

Query: 186 SGLGGAGGGAF 197
           +GLGGAGGGAF
Sbjct: 61  TGLGGAGGGAF 71

BLAST of CSPI05G02380 vs. NCBI nr
Match: gi|551639629|ref|XP_005822623.1| (hypothetical protein GUITHDRAFT_79647 [Guillardia theta CCMP2712])

HSP 1 Score: 124.0 bits (310), Expect = 4.5e-25
Identity = 74/116 (63.79%), Postives = 78/116 (67.24%), Query Frame = 1

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEV-----CDALRCSGPHARYTDVFNESI 60
           MGGGAWPFLVGG ICLVNSVNERDLSLLTS A +          C  P  +      +  
Sbjct: 1   MGGGAWPFLVGGVICLVNSVNERDLSLLTSIANIDWRGLLRGTICLDPEPKGLGKLVKVH 60

Query: 61  ALADRPGSLQLLVFNEEFLVSASHQLALTTSLPSVHTAHHTARRSYRLNGPVKCSD 112
              DR   LQLL+FNEEFLVSASHQLAL TSLP V    HTARRSYRLNGPVK SD
Sbjct: 61  RDGDR--LLQLLIFNEEFLVSASHQLALITSLPFV----HTARRSYRLNGPVKSSD 110

BLAST of CSPI05G02380 vs. NCBI nr
Match: gi|567862244|ref|XP_006423776.1| (hypothetical protein CICLE_v10029531mg [Citrus clementina])

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 59/84 (70.24%), Postives = 62/84 (73.81%), Query Frame = 1

Query: 200 YSQRLSATDILGLASMKNVAKCDTWCELQDPVNHRVFEHKLRSEPSGRGHVCLGVTHRCP 259
           Y +RLSATDI  LASMKNVAKCDTWCELQ+PVNHRVFE KLR +P GRGHVCLGVTHRCP
Sbjct: 2   YPKRLSATDISALASMKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHVCLGVTHRCP 61

Query: 260 HPHNFPAHRVGSLCGRGHTLAYRA 284
            P   P        G G  LA RA
Sbjct: 62  TP---PPQTKAGAPGCGRRLASRA 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LPG1_CUCSA3.8e-3957.51Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252100 PE=4 SV=1[more]
A0A0D2ZQ56_BRAOL7.9e-3759.64Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A0L9UDJ6_PHAAN6.3e-2695.16Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g102600 PE=4 SV=1[more]
L1IHC2_GUITH3.1e-2563.79Uncharacterized protein OS=Guillardia theta CCMP2712 GN=GUITHDRAFT_77544 PE=4 SV... [more]
M1BN45_SOLTU3.1e-2536.61Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019038 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700206742|gb|KGN61861.1|5.4e-3957.51hypothetical protein Csa_2G252100 [Cucumis sativus][more]
gi|920697603|gb|KOM40828.1|9.0e-2695.16hypothetical protein LR48_Vigan04g102600 [Vigna angularis][more]
gi|1004041341|ref|WP_061496620.1|1.2e-2590.14hypothetical protein [Legionella pneumophila][more]
gi|551639629|ref|XP_005822623.1|4.5e-2563.79hypothetical protein GUITHDRAFT_79647 [Guillardia theta CCMP2712][more]
gi|567862244|ref|XP_006423776.1|2.9e-2470.24hypothetical protein CICLE_v10029531mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G02380.1CSPI05G02380.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33220FAMILY NOT NAMEDcoord: 216..260
score: 9.8
NoneNo IPR availablePANTHERPTHR33220:SF1SUBFAMILY NOT NAMEDcoord: 216..260
score: 9.8

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None