CSPI05G02280 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G02280
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Squalene epoxidase
Location	Chr5 : 2983485 .. 2984151 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATTCAAGAACCTAGCAACACTTACGCCGTCTACCGTCAACTAAGTACCAAATCCTTCACTTTCGATCGTTCGTCGCCTGCTGTCCACTGAGTACCAGAACCTAGCAACACTTCCACCATTCGACCGTTTTTTTGGTGCCTTTATGTTATCGTTGCTCAATGGTATGCTTTTCTTTGATCTGGGCTAAAATCTCATGGCAACAACAAGCAAGATGACCCCAACAAGAAGGACAAGAAACAACACCCTTCATCGTCGTATTGGCGATCTCTTTGAGGTTGTTGCATCTGTACTCAGAAAAAATGGTGGATCAATGCGCGTTAGGATGGATCTTGGCCTCTGTTCTCAAAGCTTTGGCTTTATATTTATTGTTCGGCAAGAAAAACCATGGAGTTTCGAATGAATGGAGGTGTGAAAGCCTAAAGAATATCGCCACCACGGATGGGGAATGCAAATCGAGTAATAGCGACAGCGACATTATCATTGTCGAAGTCGGTGTCGCCAATCCTGTCTTGCCTATACTCTCGCCAAGGTAATCTTATCCTTCTGTTCTCCAACATTTTTCTCTAACTAAGTGCTCTCGCTTAGTTTCGTGTTAAACATCAGAGGATTTCTGAAAGTTTCACTTGAGAAATGCTACTGTGGAGAATCAGATTCGAGTGATTAA

mRNA sequence

ATGGCAACAACAAGCAAGATGACCCCAACAAGAAGGACAAGAAACAACACCCTTCATCGTCGTATTGGCGATCTCTTTGAGGTTGTTGCATCTAAAAACCATGGAGTTTCGAATGAATGGAGGTGTGAAAGCCTAAAGAATATCGCCACCACGGATGGGGAATGCAAATCGAGTAATAGCGACAGCGACATTATCATTGTCGAAGTCGGTGTCGCCAATCCTGTCTTGCCTATACTCTCGCCAAGAGGATTTCTGAAAGTTTCACTTGAGAAATGCTACTGTGGAGAATCAGATTCGAGTGATTAA

Coding sequence (CDS)

ATGGCAACAACAAGCAAGATGACCCCAACAAGAAGGACAAGAAACAACACCCTTCATCGTCGTATTGGCGATCTCTTTGAGGTTGTTGCATCTAAAAACCATGGAGTTTCGAATGAATGGAGGTGTGAAAGCCTAAAGAATATCGCCACCACGGATGGGGAATGCAAATCGAGTAATAGCGACAGCGACATTATCATTGTCGAAGTCGGTGTCGCCAATCCTGTCTTGCCTATACTCTCGCCAAGAGGATTTCTGAAAGTTTCACTTGAGAAATGCTACTGTGGAGAATCAGATTCGAGTGATTAA

Homology

[Close]

BLAST of CSPI05G02280 vs. TrEMBL
Match: A0A0A0KJL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G116170 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.0e-36
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1


Query: 1  MATTSKMTPTRRTRNNTLHRRIGDLFEVVASKNHGVSNEWRCESLKNIATTDGECKSSNS 60
          MATTSKMTPTRRTRNNTLHRRIGDLFEVVASKN GVSNEWRCESLKNIATTDGECKSSNS
Sbjct: 1  MATTSKMTPTRRTRNNTLHRRIGDLFEVVASKNCGVSNEWRCESLKNIATTDGECKSSNS 60

Query: 61 DSDIIIVEVGVANPVLPILSPR 83
          DSDIIIVEVGVANPVLPILSPR
Sbjct: 61 DSDIIIVEVGVANPVLPILSPR 82

[Close]

BLAST of CSPI05G02280 vs. TrEMBL
Match: A0A0A0L0L0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645290 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.8e-09
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 25 LFEVVASKNHGVSNEWRCESLKNIATTDGECKSSNSDSDIIIVEVGVANPVL 77
          L+ +   KN GVSNE R ESLKNIATT+GECKSSNSD DIIIV  GVA   L
Sbjct: 20 LYLLFGKKNCGVSNERRRESLKNIATTNGECKSSNSDGDIIIVGAGVAGSAL 71

[Close]

BLAST of CSPI05G02280 vs. NCBI nr
Match: gi|700194596|gb|KGN49773.1| (hypothetical protein Csa_5G116170 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1


Query: 1  MATTSKMTPTRRTRNNTLHRRIGDLFEVVASKNHGVSNEWRCESLKNIATTDGECKSSNS 60
          MATTSKMTPTRRTRNNTLHRRIGDLFEVVASKN GVSNEWRCESLKNIATTDGECKSSNS
Sbjct: 1  MATTSKMTPTRRTRNNTLHRRIGDLFEVVASKNCGVSNEWRCESLKNIATTDGECKSSNS 60

Query: 61 DSDIIIVEVGVANPVLPILSPR 83
          DSDIIIVEVGVANPVLPILSPR
Sbjct: 61 DSDIIIVEVGVANPVLPILSPR 82

[Close]

BLAST of CSPI05G02280 vs. NCBI nr
Match: gi|449447091|ref|XP_004141303.1| (PREDICTED: squalene monooxygenase-like [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 25 LFEVVASKNHGVSNEWRCESLKNIATTDGECKSSNSDSDIIIVEVGVANPVL 77
          L+ +   KN GVSNE R ESLKNIATT+GECKSSNSD DIIIV  GVA   L
Sbjct: 20 LYLLFGKKNCGVSNERRRESLKNIATTNGECKSSNSDGDIIIVGAGVAGSAL 71

[Close]

BLAST of CSPI05G02280 vs. NCBI nr
Match: gi|659103686|ref|XP_008452686.1| (PREDICTED: squalene monooxygenase-like [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-08
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 25 LFEVVASKNHGVSNEWRCESLKNIATTDGECKSSNSDSDIIIVEVGVANPVL 77
          L+ +   KN GV NE R ESLKNIATT+GECKSSNSD DIIIV  GVA   L
Sbjct: 20 LYLLFGKKNCGVLNERRRESLKNIATTNGECKSSNSDGDIIIVGAGVAGSAL 71

The following BLAST results are available for this feature:

BLAST of CSPI05G02280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G02280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJL3_CUCSA	1.0e-36	98.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G116170 PE=4 SV=1	[more]
A0A0A0L0L0_CUCSA	8.8e-09	69.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645290 PE=4 SV=1	[more]

BLAST of CSPI05G02280 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G02280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194596\|gb\|KGN49773.1\|	1.4e-36	98.78	hypothetical protein Csa_5G116170 [Cucumis sativus]	[more]
gi\|449447091\|ref\|XP_004141303.1\|	1.3e-08	69.23	PREDICTED: squalene monooxygenase-like [Cucumis sativus]	[more]
gi\|659103686\|ref\|XP_008452686.1\|	6.3e-08	67.31	PREDICTED: squalene monooxygenase-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G02280.1	CSPI05G02280.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G02280	Csa5G116170	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G02280	CsaV3_5G017540	Cucumber (Chinese Long) v3	cpicucB287
CSPI05G02280	CsGy5G012380	Cucumber (Gy14) v2	cgybcpiB227

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G02280	Wax gourd	cpiwgoB441
CSPI05G02280	Cucurbita maxima (Rimu)	cmacpiB307
CSPI05G02280	Cucurbita maxima (Rimu)	cmacpiB734
CSPI05G02280	Cucurbita moschata (Rifu)	cmocpiB299
CSPI05G02280	Cucurbita moschata (Rifu)	cmocpiB727
CSPI05G02280	Melon (DHL92) v3.5.1	cpimeB352
CSPI05G02280	Watermelon (Charleston Gray)	cpiwcgB380
CSPI05G02280	Watermelon (97103) v1	cpiwmB417
CSPI05G02280	Cucurbita pepo (Zucchini)	cpecpiB180
CSPI05G02280	Cucurbita pepo (Zucchini)	cpecpiB418
CSPI05G02280	Bottle gourd (USVL1VR-Ls)	cpilsiB323
CSPI05G02280	Melon (DHL92) v3.6.1	cpimedB342
CSPI05G02280	Silver-seed gourd	carcpiB0516
CSPI05G02280	Silver-seed gourd	carcpiB0862
CSPI05G02280	Watermelon (97103) v2	cpiwmbB350