CSPI05G02140 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G02140
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr5 : 2884984 .. 2885311 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAATCTAAATTCAAAACACATGATGTTAGAATATTGATATAATACCAAAGTATATGCCACACATGTCCTCAATCAACTTAAAACGTTTGAAGAGTTTGGATCAATGGTTCGACTATGTTGTGTGGTTCAGGGATGGCGCCAATGGTGGCGGAGGCGAGGGTATGCGAATCTCCGAGCCACAATTTCAAGGGTCTGTGCTTTAGTGACACAAATTGTGGGAATATCTGCAAGACAGAGGGGTTTAGCGGTGGCGTTTGCAGGGGATTTCGCCGTCGCTGCTTTTGCACAAAGCACTGTGTTTGAAATATCTCCAATAACCAACTAA

mRNA sequence

ATGGTTCGACTATGTTGTGTGGTTCAGGGATGGCGCCAATGGTGGCGGAGGCGAGGGTATGCGAATCTCCGAGCCACAATTTCAAGGGTCTGTGCTTTAGTGACACAAATTGTGGGAATATCTGCAAGACAGAGGGGTTTAGCGGTGGCGTTTGCAGGGGATTTCGCCGTCGCTGCTTTTGCACAAAGCACTGTGTTTGAAATATCTCCAATAACCAACTAA

Coding sequence (CDS)

ATGGTTCGACTATGTTGTGTGGTTCAGGGATGGCGCCAATGGTGGCGGAGGCGAGGGTATGCGAATCTCCGAGCCACAATTTCAAGGGTCTGTGCTTTAGTGACACAAATTGTGGGAATATCTGCAAGACAGAGGGGTTTAGCGGTGGCGTTTGCAGGGGATTTCGCCGTCGCTGCTTTTGCACAAAGCACTGTGTTTGAAATATCTCCAATAACCAACTAA

Homology

[Close]

BLAST of CSPI05G02140 vs. TrEMBL
Match: A0A0A0KLL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G114560 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MVRLCCVVQGWRQWWRRRGYANLRATISRVCALVTQIVGISARQRGLAVAFAGDFAVAAF 60
          MVRLCCVVQGWRQWWRRRGYANLRATISRVCALVTQIVGISARQRGLAVAFAGDFAVAAF
Sbjct: 1  MVRLCCVVQGWRQWWRRRGYANLRATISRVCALVTQIVGISARQRGLAVAFAGDFAVAAF 60

Query: 61 AQSTVFEISPITN 74
          AQSTVFEISPITN
Sbjct: 61 AQSTVFEISPITN 73

[Close]

BLAST of CSPI05G02140 vs. NCBI nr
Match: gi|700194582|gb|KGN49759.1| (hypothetical protein Csa_5G114560 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 7.0e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MVRLCCVVQGWRQWWRRRGYANLRATISRVCALVTQIVGISARQRGLAVAFAGDFAVAAF 60
          MVRLCCVVQGWRQWWRRRGYANLRATISRVCALVTQIVGISARQRGLAVAFAGDFAVAAF
Sbjct: 1  MVRLCCVVQGWRQWWRRRGYANLRATISRVCALVTQIVGISARQRGLAVAFAGDFAVAAF 60

Query: 61 AQSTVFEISPITN 74
          AQSTVFEISPITN
Sbjct: 61 AQSTVFEISPITN 73

The following BLAST results are available for this feature:

BLAST of CSPI05G02140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G02140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLL1_CUCSA	4.9e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G114560 PE=4 SV=1	[more]

BLAST of CSPI05G02140 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G02140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194582\|gb\|KGN49759.1\|	7.0e-33	100.00	hypothetical protein Csa_5G114560 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G02140.1	CSPI05G02140.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G02140	Csa5G114560	Cucumber (Chinese Long) v2	cpicuB240

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G02140	Cucumber (Chinese Long) v3	cpicucB287
CSPI05G02140	Watermelon (97103) v2	cpiwmbB350
CSPI05G02140	Wax gourd	cpiwgoB441
CSPI05G02140	Cucumber (Gy14) v1	cgycpiB555
CSPI05G02140	Cucurbita maxima (Rimu)	cmacpiB307
CSPI05G02140	Cucurbita maxima (Rimu)	cmacpiB734
CSPI05G02140	Cucurbita moschata (Rifu)	cmocpiB299
CSPI05G02140	Cucurbita moschata (Rifu)	cmocpiB727
CSPI05G02140	Melon (DHL92) v3.5.1	cpimeB352
CSPI05G02140	Watermelon (Charleston Gray)	cpiwcgB380
CSPI05G02140	Watermelon (97103) v1	cpiwmB417
CSPI05G02140	Cucurbita pepo (Zucchini)	cpecpiB180
CSPI05G02140	Cucurbita pepo (Zucchini)	cpecpiB418
CSPI05G02140	Bottle gourd (USVL1VR-Ls)	cpilsiB323
CSPI05G02140	Melon (DHL92) v3.6.1	cpimedB342
CSPI05G02140	Cucumber (Gy14) v2	cgybcpiB227
CSPI05G02140	Silver-seed gourd	carcpiB0516
CSPI05G02140	Silver-seed gourd	carcpiB0862