CSPI05G00580 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G00580
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 797967 .. 798910 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCTTCCCCACTATTTCCCTCCCTTTCTCCAACACACAGCCACTGCCCTCCGCACGATTTCCCTTCTTTCTCCCACTGCCGCGCACACAGCCCTGCGATTTCCCCCTTTCTCCCACAGCTGCCGCACACTGCCGCCCCTAAGATTTCCCCACCTTTTTCCGGACTCCATTTCTCGCCGCAGTAGCTTCCCTGCTCGTGCCCGACTTCGTCTTCTCGCTACAATCGTATGTTATCCCTTCGCACGCTCACTGAAGTTTGGAAAATCTTTTATTTTCAACAAGTTTGGTAAATCTTCAACTCTCGTTCTATTGAATTTGAAACCAAAATTTAACATATTCTTGTTGTCTAATTCCTTATAAAATAATTTGAAACCAAAGTTTAAATGATGTAGAATATTTATTATCACATTCTCTATATACAAGGACTTGAAATTTCATTAGTTTAATTATCACGTTTATTTATTTATTTTATTAACTTTACTACCATGTTAAACAAAGTATTGTATATGTGAATTGCTATGACTATCTTGCAGTTTCATAGATTTGTATGGAATATGAGTATGGTGATTTTTGTTGAATTTGAATTTCAAGCATGATCTTGGTGCTATAATCAAATTATTAAACATTTGATCAATCTAAGAAGTGATCAAATTATAACATTCTCTTGGTTGATCTAAACTAGTATAGGGGGGTGTTAGTTTCGATCTTTAGATTGAGGATTAGGATTGCCTTATTAGTGTGTAGCTAGTCCAAGAGCATTATGAATTTGTAATGAAAGGTTTATGAATTTGTAATATATGGACTATTTAGTCAAGTATATTAGTTTCCTTTGCATTTTCAGCACATTTTTGCTTGTAATAATTGGACTTCTAAGTTTATGTATGAACATCTGAGTTACTTGGTTGCTAATTTTGCAGGTTTTACTGCTAAACCTTCGCTGA

mRNA sequence

ATGTTCCTTCCCCACTATTTCCCTCCCTTTCTCCAACACACAGCCACTGCCCTCCGCACGATTTCCCTTCTTTCTCCCACTGCCGCGCACACAGCCCTGCGATTTCCCCCTTTCTCCCACAGCTGCCGCACACTGCCGCCCCTAAGATTTCCCCACCTTTTTCCGGACTCCATTTCTCGCCGCAGTAGCTTCCCTGCTCGTGCCCGACTTCGTCTTCTCGCTACAATCGTTTTACTGCTAAACCTTCGCTGA

Coding sequence (CDS)

ATGTTCCTTCCCCACTATTTCCCTCCCTTTCTCCAACACACAGCCACTGCCCTCCGCACGATTTCCCTTCTTTCTCCCACTGCCGCGCACACAGCCCTGCGATTTCCCCCTTTCTCCCACAGCTGCCGCACACTGCCGCCCCTAAGATTTCCCCACCTTTTTCCGGACTCCATTTCTCGCCGCAGTAGCTTCCCTGCTCGTGCCCGACTTCGTCTTCTCGCTACAATCGTTTTACTGCTAAACCTTCGCTGA
Homology
[Close]
BLAST of CSPI05G00580 vs. TrEMBL
Match: A0A0A0KPH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021340 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 

Query: 41 SCRTLPPLRFPHLFPDSISRRSSFPARARLRLLATIV 78
          +CRTLPPLRFPHLFPDSIS RSSFPARARLRLLATIV
Sbjct: 6  TCRTLPPLRFPHLFPDSISLRSSFPARARLRLLATIV 42

[Close]
BLAST of CSPI05G00580 vs. NCBI nr
Match: gi|700194424|gb|KGN49601.1| (hypothetical protein Csa_5G021340 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 

Query: 41 SCRTLPPLRFPHLFPDSISRRSSFPARARLRLLATIV 78
          +CRTLPPLRFPHLFPDSIS RSSFPARARLRLLATIV
Sbjct: 6  TCRTLPPLRFPHLFPDSISLRSSFPARARLRLLATIV 42

The following BLAST results are available for this feature:
BLAST of CSPI05G00580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G00580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPH1_CUCSA3.9e-1094.59Uncharacterized protein OS=Cucumis sativus GN=Csa_5G021340 PE=4 SV=1[more]
BLAST of CSPI05G00580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G00580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194424|gb|KGN49601.1|5.5e-1094.59hypothetical protein Csa_5G021340 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G00580.1CSPI05G00580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G00580Csa5G021340Cucumber (Chinese Long) v2cpicuB240
CSPI05G00580CsGy5G010830Cucumber (Gy14) v2cgybcpiB227
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G00580Silver-seed gourdcarcpiB0704
CSPI05G00580Silver-seed gourdcarcpiB1009
CSPI05G00580Cucumber (Chinese Long) v3cpicucB286
CSPI05G00580Watermelon (97103) v2cpiwmbB417
CSPI05G00580Wax gourdcpiwgoB511
CSPI05G00580Cucumber (Gy14) v1cgycpiB577
CSPI05G00580Cucurbita maxima (Rimu)cmacpiB739
CSPI05G00580Cucurbita maxima (Rimu)cmacpiB740
CSPI05G00580Cucurbita moschata (Rifu)cmocpiB731
CSPI05G00580Cucurbita moschata (Rifu)cmocpiB732
CSPI05G00580Melon (DHL92) v3.5.1cpimeB406
CSPI05G00580Watermelon (Charleston Gray)cpiwcgB426
CSPI05G00580Watermelon (97103) v1cpiwmB396
CSPI05G00580Cucurbita pepo (Zucchini)cpecpiB423
CSPI05G00580Cucurbita pepo (Zucchini)cpecpiB424
CSPI05G00580Bottle gourd (USVL1VR-Ls)cpilsiB371
CSPI05G00580Melon (DHL92) v3.6.1cpimedB404