CSPI05G00490 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G00490
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Self-incompatibility protein
Location	Chr5 : 690375 .. 690680 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGTCATTGTTGGTCCAAAGATAACGATTTAGGGTTACAAATACTTCTTCCAGATGAAAGGCAAAGTTGGCCCTTCAGAAGGAACTTTATGGGAACAACATTATTCCATTGTAGATTGGAATGGGAAAGAGGGTTTAGGGAATTTGATGCATTTTTTGTTGACGAAGATTTCGTTTATCAATTTTGTCCCAACTTTCTATGCGTTTGGATAGCCAAACAAGATGGGCTTTACATGCTGAATGAAGCTGGTCAACTTGTTTTTCATCATCATTGGAAATTGCTCCGAATGCCCTCCTTGTAA

mRNA sequence

ATGGATTGTCATTGTTGGTCCAAAGATAACGATTTAGGGTTACAAATACTTCTTCCAGATGAAAGGCAAAGTTGGCCCTTCAGAAGGAACTTTATGGGAACAACATTATTCCATTGTAGATTGGAATGGGAAAGAGGGTTTAGGGAATTTGATGCATTTTTTGTTGACGAAGATTTCGTTTATCAATTTTGTCCCAACTTTCTATGCGTTTGGATAGCCAAACAAGATGGGCTTTACATGCTGAATGAAGCTGGTCAACTTGTTTTTCATCATCATTGGAAATTGCTCCGAATGCCCTCCTTGTAA

Coding sequence (CDS)

ATGGATTGTCATTGTTGGTCCAAAGATAACGATTTAGGGTTACAAATACTTCTTCCAGATGAAAGGCAAAGTTGGCCCTTCAGAAGGAACTTTATGGGAACAACATTATTCCATTGTAGATTGGAATGGGAAAGAGGGTTTAGGGAATTTGATGCATTTTTTGTTGACGAAGATTTCGTTTATCAATTTTGTCCCAACTTTCTATGCGTTTGGATAGCCAAACAAGATGGGCTTTACATGCTGAATGAAGCTGGTCAACTTGTTTTTCATCATCATTGGAAATTGCTCCGAATGCCCTCCTTGTAA

Homology

[Close]

BLAST of CSPI05G00490 vs. TrEMBL
Match: A0A0A0KL79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G016040 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-28
Identity = 53/97 (54.64%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1   MDCHCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFV 60
           +D HC+SKD+DLGL IL PDE+Q W F+ N++ TT FHCRLEWE G+ EFD+F    DFV
Sbjct: 41  LDSHCYSKDDDLGLHILFPDEKQDWSFKGNWIATTSFHCRLEWEVGYLEFDSFKSAPDFV 100

Query: 61  YQFCPNFLCVWIAKQDGLYMLNEAGQLVFHHHWKLLR 98
             +C N  C+W A+QDG+Y+ N AG+ VF+++W+++R
Sbjct: 101 TNYCGNQTCIWSARQDGVYLNNAAGEQVFYNYWEMIR 137

[Close]

BLAST of CSPI05G00490 vs. TrEMBL
Match: A0A0A0KSN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G538550 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-23
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 1   MDCHCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFV 60
           +D HC+SKDNDLGL IL P E Q W F+ N   TT F C LEWE G  EFD+F  + +F+
Sbjct: 53  LDSHCFSKDNDLGLHILFPGELQDWSFQDNDFETTKFRCILEWENGLLEFDSFKTNHNFL 112

Query: 61  YQFCPNFLCVWIAKQDGLYMLNEAGQLVFHHHWKLL 97
             FC N  C W A+QDG+Y+ N  G+ VF  +W +L
Sbjct: 113 NNFCGNLTCSWSARQDGVYLTNVKGEYVFQDYWDML 148

[Close]

BLAST of CSPI05G00490 vs. TrEMBL
Match: A0A0A0KIQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G017790 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1


Query: 1   MDCHCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFV 60
           +D  C+SKD++ GL +L PDE+Q+W F+ N+  TT FHCRLEWE G+ EFD+F  D  FV
Sbjct: 64  LDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEIGYLEFDSFKSDPAFV 123

Query: 61  YQFCPN 67
             FC N
Sbjct: 124 TDFCCN 129

[Close]

BLAST of CSPI05G00490 vs. TrEMBL
Match: M5VMC1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024473mg PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-14
Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 1   MDCHCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFV 60
           +  HC SKD+DLG+  L  D+  SW FR NF   TL+ C L W  G + FDAF VDE  +
Sbjct: 45  LTAHCKSKDDDLGVHELAVDQEFSWEFRINFFDRTLYFCNLVWNGGHKTFDAFLVDEKAL 104

Query: 61  YQFCPNFLCVWIAKQDGLYMLN 83
              C +  C+W A+ DG+Y+ N
Sbjct: 105 LNSCSSSDCMWRARDDGVYLFN 126

[Close]

BLAST of CSPI05G00490 vs. TrEMBL
Match: V4TYS4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023991mg PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.0e-14
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 1


Query: 1   MDCHCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFV 60
           ++ HC SKD+DLGL+ L      +W FR NF  TTLF C L W  G + FD +  D+ F+
Sbjct: 38  LEAHCKSKDDDLGLRRLAAGTEFNWTFRVNFWSTTLFFCDLRWANGHKAFDVYCPDDQFL 97

Query: 61  YQFCPNFLCVWIAKQDGLYMLNE-AGQLVFHHHW 94
            + C    C W A+ DG+Y  +E     V  H W
Sbjct: 98  AKKCAYNFCRWSARDDGIYAFSEKKNHYVLAHKW 131

[Close]

BLAST of CSPI05G00490 vs. TAIR10
Match: AT4G29035.1 (AT4G29035.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-11
Identity = 37/92 (40.22%), Postives = 49/92 (53.26%), Query Frame = 1


Query: 4   HCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFVYQF 63
           HC SK+NDLG   L   +R SW F  N + +TLF C +  + G      F+ D+  ++  
Sbjct: 58  HCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMSKDDGHMNVKVFW-DDVILFHR 117

Query: 64  CPNFLCVWIAKQDGLYMLNEA-GQLVFHHHWK 95
           C    CVW AK DGLY+ N A G+ V    WK
Sbjct: 118 CDWKNCVWTAKNDGLYLWNSAIGEDVLSEKWK 148

[Close]

BLAST of CSPI05G00490 vs. TAIR10
Match: AT5G12060.1 (AT5G12060.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 1


Query: 1   MDCHCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFV 60
           ++ HC S D+DLGL+IL P+   S+ FR + +GTTLF+C   W    + FD +  D D V
Sbjct: 51  LNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSKRFDIYDDDRDGV 110

Query: 61  YQFCPNFLCVWIAKQDGLYMLNEA 85
                   C+W     G  M +E+
Sbjct: 111 RSHISCINCIWDISIQGPCMFSES 134

[Close]

BLAST of CSPI05G00490 vs. TAIR10
Match: AT4G16295.1 (AT4G16295.1 S-protein homologue 1)

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-10
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1


Query: 4   HCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFVYQF 63
           HC SK++DLG   L    R SW F  N + +T F C +  + G    + F+ D+  ++  
Sbjct: 58  HCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNKDNGHMNVNVFW-DDVILFHR 117

Query: 64  CPNFLCVWIAKQDGLYMLNEA-GQLVFHHHWKL 96
           C    C+W AK DGLY+ N A G+ V    W++
Sbjct: 118 CGWKNCIWTAKTDGLYLWNSASGEDVLSRKWEV 149

[Close]

BLAST of CSPI05G00490 vs. TAIR10
Match: AT4G24975.1 (AT4G24975.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-09
Identity = 32/76 (42.11%), Postives = 37/76 (48.68%), Query Frame = 1


Query: 4   HCWSKDNDLGLQILLPDERQSWPFRR--NFMGTTLFHCRLEWERGFREFDAFFVDEDFVY 63
           HC SKD DLG Q L P  +Q W FR+  +F G TLF C  EWE   + FD      D   
Sbjct: 47  HCKSKDKDLGPQSLAP--QQHWGFRKTLDFWGVTLFFCHFEWENQSKWFDILVAGRD--R 106

Query: 64  QFCPNFLCVWIAKQDG 78
             C    CVW  +  G
Sbjct: 107 NTCAEHPCVWSIRPSG 118

[Close]

BLAST of CSPI05G00490 vs. TAIR10
Match: AT5G12070.1 (AT5G12070.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-08
Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 1


Query: 4   HCWSKDNDLGLQILLPDERQSWPFRRNFM-GTTLFHCRLEWERGFREFDAFFVDEDFVYQ 63
           HC S D+DLGL+IL P+   S+ FR + + G TLF C   W    + F+ +  D D V  
Sbjct: 55  HCKSADDDLGLKILAPNGSWSFKFRPSIVPGVTLFFCHFTWPGQSKWFNIYDDDRDGVRM 114

Query: 64  FCPNFLCVW 72
             P   C+W
Sbjct: 115 GIPCIYCIW 123

[Close]

BLAST of CSPI05G00490 vs. NCBI nr
Match: gi|700194417|gb|KGN49594.1| (hypothetical protein Csa_5G016040 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 2.5e-28
Identity = 53/97 (54.64%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1   MDCHCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFV 60
           +D HC+SKD+DLGL IL PDE+Q W F+ N++ TT FHCRLEWE G+ EFD+F    DFV
Sbjct: 41  LDSHCYSKDDDLGLHILFPDEKQDWSFKGNWIATTSFHCRLEWEVGYLEFDSFKSAPDFV 100

Query: 61  YQFCPNFLCVWIAKQDGLYMLNEAGQLVFHHHWKLLR 98
             +C N  C+W A+QDG+Y+ N AG+ VF+++W+++R
Sbjct: 101 TNYCGNQTCIWSARQDGVYLNNAAGEQVFYNYWEMIR 137

[Close]

BLAST of CSPI05G00490 vs. NCBI nr
Match: gi|659105271|ref|XP_008453055.1| (PREDICTED: uncharacterized protein LOC103493877 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-27
Identity = 51/97 (52.58%), Postives = 73/97 (75.26%), Query Frame = 1


Query: 1   MDCHCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFV 60
           +D HC+SKD+DLG ++L P++ QSW FR N++GTT FHC+LEWE G+ EFDAF  D  F+
Sbjct: 43  LDSHCYSKDDDLGTKVLYPNDEQSWSFRGNWLGTTNFHCKLEWENGYLEFDAFSNDVKFL 102

Query: 61  YQFCPNFLCVWIAKQDGLYMLNEAGQLVFHHHWKLLR 98
             FC    C W A+QDG+Y+ N+ GQ+VF+ +W+++R
Sbjct: 103 TNFCAKSSCCWSARQDGVYLTNQNGQVVFNQNWEMIR 139

[Close]

BLAST of CSPI05G00490 vs. NCBI nr
Match: gi|659134192|ref|XP_008467075.1| (PREDICTED: uncharacterized protein LOC103504513, partial [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 5.7e-25
Identity = 49/97 (50.52%), Postives = 71/97 (73.20%), Query Frame = 1


Query: 1   MDCHCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFV 60
           +D  C+SKD+DLGL  L P+E+Q+W F+ N++ TT FHC+LEWE  + EFD+F  D DFV
Sbjct: 52  LDSSCYSKDDDLGLHRLYPNEQQNWSFKGNWIATTDFHCKLEWEIAYLEFDSFKSDPDFV 111

Query: 61  YQFCPNFLCVWIAKQDGLYMLNEAGQLVFHHHWKLLR 98
             +C N  C+W A+QDG+Y+ N  GQ VF+ +W++L+
Sbjct: 112 TNYCGNRTCIWSARQDGVYLNNAVGQQVFYDYWEMLK 148

[Close]

BLAST of CSPI05G00490 vs. NCBI nr
Match: gi|700196255|gb|KGN51432.1| (hypothetical protein Csa_5G538550 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 4.1e-23
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 1


Query: 1   MDCHCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFV 60
           +D HC+SKDNDLGL IL P E Q W F+ N   TT F C LEWE G  EFD+F  + +F+
Sbjct: 53  LDSHCFSKDNDLGLHILFPGELQDWSFQDNDFETTKFRCILEWENGLLEFDSFKTNHNFL 112

Query: 61  YQFCPNFLCVWIAKQDGLYMLNEAGQLVFHHHWKLL 97
             FC N  C W A+QDG+Y+ N  G+ VF  +W +L
Sbjct: 113 NNFCGNLTCSWSARQDGVYLTNVKGEYVFQDYWDML 148

[Close]

BLAST of CSPI05G00490 vs. NCBI nr
Match: gi|659105279|ref|XP_008453057.1| (PREDICTED: uncharacterized protein LOC103493879, partial [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-22
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 1


Query: 1   MDCHCWSKDNDLGLQILLPDERQSWPFRRNFMGTTLFHCRLEWERGFREFDAFFVDEDFV 60
           +D HC+SKDNDLGL IL P E+Q W F  N   TT F CRLEWE G  EFD+F  D DF+
Sbjct: 34  LDSHCFSKDNDLGLHILFPGEQQDWSFEDNIFETTKFRCRLEWENGLLEFDSFKSDLDFL 93

Query: 61  YQFCPNFLCVWIAKQDGLYMLN 83
             FC N  C W AKQDG+Y+ N
Sbjct: 94  NNFCGNLTCSWSAKQDGVYLTN 115

The following BLAST results are available for this feature:

BLAST of CSPI05G00490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G00490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL79_CUCSA	1.7e-28	54.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G016040 PE=4 SV=1	[more]
A0A0A0KSN2_CUCSA	2.8e-23	51.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G538550 PE=4 SV=1	[more]
A0A0A0KIQ4_CUCSA	1.4e-14	54.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G017790 PE=4 SV=1	[more]
M5VMC1_PRUPE	3.1e-14	45.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024473mg PE=4 SV=1	[more]
V4TYS4_9ROSI	7.0e-14	40.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023991mg PE=4 SV=1	[more]

BLAST of CSPI05G00490 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29035.1	1.3e-11	40.22	Plant self-incompatibility protein S1 family	[more]
AT5G12060.1	1.7e-11	36.90	Plant self-incompatibility protein S1 family	[more]
AT4G16295.1	2.5e-10	35.48	S-protein homologue 1	[more]
AT4G24975.1	1.6e-09	42.11	Plant self-incompatibility protein S1 family	[more]
AT5G12070.1	8.7e-08	39.13	Plant self-incompatibility protein S1 family	[more]

BLAST of CSPI05G00490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194417\|gb\|KGN49594.1\|	2.5e-28	54.64	hypothetical protein Csa_5G016040 [Cucumis sativus]	[more]
gi\|659105271\|ref\|XP_008453055.1\|	1.6e-27	52.58	PREDICTED: uncharacterized protein LOC103493877 [Cucumis melo]	[more]
gi\|659134192\|ref\|XP_008467075.1\|	5.7e-25	50.52	PREDICTED: uncharacterized protein LOC103504513, partial [Cucumis melo]	[more]
gi\|700196255\|gb\|KGN51432.1\|	4.1e-23	51.04	hypothetical protein Csa_5G538550 [Cucumis sativus]	[more]
gi\|659105279\|ref\|XP_008453057.1\|	7.6e-22	58.54	PREDICTED: uncharacterized protein LOC103493879, partial [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G00490.1	CSPI05G00490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 2..93 score: 2.1
None	No IPR available	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 4..99 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G00490	Cucurbita pepo (Zucchini)	cpecpiB423
CSPI05G00490	Cucurbita pepo (Zucchini)	cpecpiB424
CSPI05G00490	Melon (DHL92) v3.6.1	cpimedB404
CSPI05G00490	Cucumber (Gy14) v2	cgybcpiB227
CSPI05G00490	Silver-seed gourd	carcpiB0704
CSPI05G00490	Cucumber (Chinese Long) v3	cpicucB286
CSPI05G00490	Watermelon (97103) v2	cpiwmbB417
CSPI05G00490	Cucurbita maxima (Rimu)	cmacpiB739
CSPI05G00490	Cucurbita maxima (Rimu)	cmacpiB740
CSPI05G00490	Cucurbita moschata (Rifu)	cmocpiB731
CSPI05G00490	Cucurbita moschata (Rifu)	cmocpiB732
CSPI05G00490	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G00490	Watermelon (Charleston Gray)	cpiwcgB426