CSPI05G00470 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G00470
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 666020 .. 666678 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATGAGATAAAAATTAATTAATATTTTCAAGTGTAAATTAACACTCGTTAAAAAAATACAAAATTATTTCAAGATTTTTTGAATTGTTTCCAAACTTTCTCAAACCAAACAATTATGGTGTTTGGAATAATATGAGAATACAATAAGGCCATATGGGCAATCGAAGTCTAAACCTTCTACCTAATCATTTCCCAGTAATTATAAAAAACTTGTTCGCCAGCAGCATTATTCAAATAAACTCCATCTTGTCTTGCACTCCAAATACAAGTTTGGTTTCCACAATAATTGGTCACAAAATCAGGAGCACTTTTAAAACTATCAAATTCCAAATACCCTACTTCCCATTCCAATCTACAATGAAAATTGGTCGTGGCAATCCAATTCCCTTTAAACGACCAATCTTGTTGTTCGTCTGGAAACAATATATGCAATCCCAAATCGTCATCTTTCGAGTAGCAATGGCTGTCTAAAATGAACATACGCAAGTCGTTGTGAATCTCGACAGTAAAACGTTCAAACATGACGACAGGATTGTTTGGAACCGATAACTTTGGTGTCGGAGATTTGTTTTTTGCCTTTTTTTTGGCCATGGACGTTCTTAAGGGGGCTAGGAGCAAGATAACTAACAATAAGGTAAGTCGCAGTGCCATTGTTAAAT

mRNA sequence

ATGGGCAATCGAAGTCTAAACCTTCTACCTAATCATTTCCCAGTAATTATAAAAAACTTGTTCGCCAGCAGCATTATTCAAATAAACTCCATCTTGTCTTGCACTCCAAATACAAGTTTGGTTTCCACAATAATTGGTCACAAAATCAGGAGCACTTTTAAAACTATCAAATTCCAAATACCCTACTTCCCATTCCAATCTACAATGAAAATTGGTCGTGGCAATCCAATTCCCTTTAAACGACCAATCTTGTTGTTCGTCTGGAAACAATATATGCAATCCCAAATCGTCATCTTTCGAGTAGCAATGGCTGTCTAA

Coding sequence (CDS)

ATGGGCAATCGAAGTCTAAACCTTCTACCTAATCATTTCCCAGTAATTATAAAAAACTTGTTCGCCAGCAGCATTATTCAAATAAACTCCATCTTGTCTTGCACTCCAAATACAAGTTTGGTTTCCACAATAATTGGTCACAAAATCAGGAGCACTTTTAAAACTATCAAATTCCAAATACCCTACTTCCCATTCCAATCTACAATGAAAATTGGTCGTGGCAATCCAATTCCCTTTAAACGACCAATCTTGTTGTTCGTCTGGAAACAATATATGCAATCCCAAATCGTCATCTTTCGAGTAGCAATGGCTGTCTAA
Homology
[Close]
BLAST of CSPI05G00470 vs. TrEMBL
Match: A0A0A0KJ79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G016915 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.8e-50
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1 

Query: 1   MGNRSLNLLPNHFPVIIKNLFASSIIQINSILSCTPNTSLVSTIIGHKIRSTFKTIKFQI 60
           MGNRSLNLLPNHFPVIIKNLFASSIIQINSILSCTPNTSLVSTIIGHKIRSTFKTIKFQI
Sbjct: 1   MGNRSLNLLPNHFPVIIKNLFASSIIQINSILSCTPNTSLVSTIIGHKIRSTFKTIKFQI 60

Query: 61  PYFPFQSTMKIGRGNPIPFKRPILLFVWKQYMQSQIVIFRVAMAV 106
           PYFPFQSTMK GRGNPIPFKRPIL FVWKQYMQSQIVIFRVAMAV
Sbjct: 61  PYFPFQSTMKTGRGNPIPFKRPILFFVWKQYMQSQIVIFRVAMAV 105

[Close]
BLAST of CSPI05G00470 vs. NCBI nr
Match: gi|700194416|gb|KGN49593.1| (hypothetical protein Csa_5G016915 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 6.9e-50
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1 

Query: 1   MGNRSLNLLPNHFPVIIKNLFASSIIQINSILSCTPNTSLVSTIIGHKIRSTFKTIKFQI 60
           MGNRSLNLLPNHFPVIIKNLFASSIIQINSILSCTPNTSLVSTIIGHKIRSTFKTIKFQI
Sbjct: 1   MGNRSLNLLPNHFPVIIKNLFASSIIQINSILSCTPNTSLVSTIIGHKIRSTFKTIKFQI 60

Query: 61  PYFPFQSTMKIGRGNPIPFKRPILLFVWKQYMQSQIVIFRVAMAV 106
           PYFPFQSTMK GRGNPIPFKRPIL FVWKQYMQSQIVIFRVAMAV
Sbjct: 61  PYFPFQSTMKTGRGNPIPFKRPILFFVWKQYMQSQIVIFRVAMAV 105

The following BLAST results are available for this feature:
BLAST of CSPI05G00470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G00470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ79_CUCSA4.8e-5098.10Uncharacterized protein OS=Cucumis sativus GN=Csa_5G016915 PE=4 SV=1[more]
BLAST of CSPI05G00470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G00470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194416|gb|KGN49593.1|6.9e-5098.10hypothetical protein Csa_5G016915 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G00470.1CSPI05G00470.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..34
score:

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G00470Silver-seed gourdcarcpiB0704
CSPI05G00470Cucumber (Chinese Long) v3cpicucB286
CSPI05G00470Watermelon (97103) v2cpiwmbB417
CSPI05G00470Cucurbita maxima (Rimu)cmacpiB739
CSPI05G00470Cucurbita maxima (Rimu)cmacpiB740
CSPI05G00470Cucurbita moschata (Rifu)cmocpiB731
CSPI05G00470Cucurbita moschata (Rifu)cmocpiB732
CSPI05G00470Cucumber (Chinese Long) v2cpicuB240
CSPI05G00470Watermelon (Charleston Gray)cpiwcgB426
CSPI05G00470Cucurbita pepo (Zucchini)cpecpiB423
CSPI05G00470Cucumber (Gy14) v2cgybcpiB227