CSPI05G00350 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G00350
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Leucine-rich repeat receptor-like protein kinase family protein
Location	Chr5 : 498562 .. 499237 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATCAGAGTAATGTGAGTCAGAAGGGCCAAAGTGAGCTTAGCTCAGGGTTATTGGCATGATATTCATTCCTTGAGGTTGAAGGTTCAATCCTCTAGTTGTTGTACTTAGTAACCTAGGTCACAAGAATCTGCTACCATGAAATAATATTTCATAAAGATTTGTAAAAGAGCTCTTTTATTCAATAATCTGAAAGCTTTATAGAAAGATAAATATGTTTGGCAAAAGTATAACAAGAAAACTGAAATAAACAATATACTAACTGATTATAACAGGCTTTAACAAAATAATAACCATCTCAGTTGCAAGTTTAATTAAACGTGACAATTTCCTAGGTTGTTGAGCATAATAGTTGGTGATCATGTTCTTTCCTTGACATTCATGTTCAATTGTTGATTATGTTTGCCTGGAAGGTACTTAGATAGTTCTGGAGTTCAGGGTGACATTCCCACAACATTTTCAAATCTTACAAATTTGCAGACAGTGTAAGGGAATTGTCCATCTTTGTTTTCTTCTAATTGTTCAAGAAATTTCTTAAGAACTAGAACCCATGTATGTGTTGTTGAGATACATTATTTCTTTTTTATTCTGGACAGATTGGCATCAGACAACAAACTCACCGGAGAAATACCTGGATTCATTGGGAGTTGGCTAAAACTCAGAACGTTGTAA

mRNA sequence

ATGAAGAATCAGAGTAATGTGAGTCAGAAGGGCCAAAGTGAGCTTAGCTCAGGGTACTTAGATAGTTCTGGAGTTCAGGGTGACATTCCCACAACATTTTCAAATCTTACAAATTTGCAGACAGTATTGGCATCAGACAACAAACTCACCGGAGAAATACCTGGATTCATTGGGAGTTGGCTAAAACTCAGAACGTTGTAA

Coding sequence (CDS)

ATGAAGAATCAGAGTAATGTGAGTCAGAAGGGCCAAAGTGAGCTTAGCTCAGGGTACTTAGATAGTTCTGGAGTTCAGGGTGACATTCCCACAACATTTTCAAATCTTACAAATTTGCAGACAGTATTGGCATCAGACAACAAACTCACCGGAGAAATACCTGGATTCATTGGGAGTTGGCTAAAACTCAGAACGTTGTAA

Homology

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BLAST of CSPI05G00350 vs. Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-08
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1


Query: 13  SELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           ++L   Y+DSSG+ G +P +F+NL  L+    +D +LTG+IP FIG W KL TL
Sbjct: 194 TKLQQIYIDSSGLSGGLPVSFANLVELEQAWIADMELTGQIPDFIGDWTKLTTL 247

[Close]

BLAST of CSPI05G00350 vs. Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-07
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1


Query: 13  SELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           ++L   Y+DSSG+ G IP +F+NL  L+    +D ++T +IP FIG W KL TL
Sbjct: 195 TKLQQMYIDSSGLSGRIPLSFANLVQLEQAWIADLEVTDQIPDFIGDWTKLTTL 248

[Close]

BLAST of CSPI05G00350 vs. Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 8.6e-06
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1


Query: 20  LDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           L S+   G+IP+TF+ LT L+    SDN+L+G IP FI  W KL  L
Sbjct: 165 LSSNNFNGEIPSTFAKLTTLRDFRVSDNQLSGTIPDFIQKWTKLERL 211

[Close]

BLAST of CSPI05G00350 vs. TrEMBL
Match: A0A0A0KIP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G011750 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MKNQSNVSQKGQSELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSW 60
          MKNQSNVSQKGQSELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSW
Sbjct: 1  MKNQSNVSQKGQSELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSW 60

Query: 61 LKLRTL 67
          LKLRTL
Sbjct: 61 LKLRTL 66

[Close]

BLAST of CSPI05G00350 vs. TrEMBL
Match: B9HGV2_POPTR (Leucine-rich repeat family protein OS=Populus trichocarpa GN=POPTR_0007s08160g PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1


Query: 14  ELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           +L   Y DSSGV G+IPTTF+NL NL TV ASDN+LTG IP FIG+W KL +L
Sbjct: 195 KLEQIYFDSSGVSGEIPTTFANLQNLATVWASDNELTGRIPDFIGNWSKLTSL 247

[Close]

BLAST of CSPI05G00350 vs. TrEMBL
Match: A0A061FAZ5_THECC (Leucine-rich repeat transmembrane protein kinase OS=Theobroma cacao GN=TCM_032666 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 13  SELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           S L   Y DSSGV G+IP+TF+NL NLQTV ASD +LTG IP FIG+W KLR L
Sbjct: 201 SMLEQLYFDSSGVTGEIPSTFTNLQNLQTVWASDTELTGRIPDFIGNWSKLRDL 254

[Close]

BLAST of CSPI05G00350 vs. TrEMBL
Match: A5C3M3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034202 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-10
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 13  SELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           SE+ + Y DSSG+ G+IP+TF+NL +L TV ASDN+LTG IP FIG+W KL  L
Sbjct: 217 SEIKTSYFDSSGLSGEIPSTFANLQSLTTVWASDNELTGNIPDFIGNWSKLTVL 270

[Close]

BLAST of CSPI05G00350 vs. TrEMBL
Match: B9RI14_RICCO (ATP binding protein, putative OS=Ricinus communis GN=RCOM_1575290 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.0e-10
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 13  SELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           + L   Y DSSGV G+IP TF+NL N+ TV ASDN+LTG IP FIG+W KL TL
Sbjct: 179 TRLDQIYFDSSGVSGEIPPTFANLRNMVTVWASDNELTGRIPDFIGNWSKLATL 232

[Close]

BLAST of CSPI05G00350 vs. TAIR10
Match: AT1G56145.2 (AT1G56145.2 Leucine-rich repeat transmembrane protein kinase)

HSP 1 Score: 60.5 bits (145), Expect = 4.7e-10
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1


Query: 19  YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           Y+ SSG+ G+IP++F+N  NL+    +D +LTG+IP FIG+W KL TL
Sbjct: 196 YIGSSGLSGEIPSSFANFVNLEEAWINDIRLTGQIPDFIGNWTKLTTL 243

[Close]

BLAST of CSPI05G00350 vs. TAIR10
Match: AT1G56140.1 (AT1G56140.1 Leucine-rich repeat transmembrane protein kinase)

HSP 1 Score: 59.7 bits (143), Expect = 8.0e-10
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1


Query: 13  SELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           ++L   Y+DSSG+ G +P +F+NL  L+    +D +LTG+IP FIG W KL TL
Sbjct: 194 TKLQQIYIDSSGLSGGLPVSFANLVELEQAWIADMELTGQIPDFIGDWTKLTTL 247

[Close]

BLAST of CSPI05G00350 vs. TAIR10
Match: AT1G56120.1 (AT1G56120.1 Leucine-rich repeat transmembrane protein kinase)

HSP 1 Score: 56.6 bits (135), Expect = 6.8e-09
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1


Query: 13  SELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           ++L   Y+DSSG+ G IP +F+N   L+     D +LTG IP FIG W KL TL
Sbjct: 170 TKLQQMYIDSSGLSGGIPLSFANFVELEVAWIMDVELTGRIPDFIGFWTKLTTL 223

[Close]

BLAST of CSPI05G00350 vs. TAIR10
Match: AT1G56130.1 (AT1G56130.1 Leucine-rich repeat transmembrane protein kinase)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-08
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1


Query: 13  SELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           ++L   Y+DSSG+ G IP +F+NL  L+    +D ++T +IP FIG W KL TL
Sbjct: 195 TKLQQMYIDSSGLSGRIPLSFANLVQLEQAWIADLEVTDQIPDFIGDWTKLTTL 248

[Close]

BLAST of CSPI05G00350 vs. TAIR10
Match: AT1G53420.1 (AT1G53420.1 Leucine-rich repeat transmembrane protein kinase)

HSP 1 Score: 50.4 bits (119), Expect = 4.8e-07
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1


Query: 20  LDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           L S+   G+IP+TF+ LT L+    SDN+L+G IP FI  W KL  L
Sbjct: 165 LSSNNFNGEIPSTFAKLTTLRDFRVSDNQLSGTIPDFIQKWTKLERL 211

[Close]

BLAST of CSPI05G00350 vs. NCBI nr
Match: gi|700194408|gb|KGN49585.1| (hypothetical protein Csa_5G011750 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 6.1e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 1  MKNQSNVSQKGQSELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSW 60
          MKNQSNVSQKGQSELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSW
Sbjct: 1  MKNQSNVSQKGQSELSSGYLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSW 60

Query: 61 LKLRTL 67
          LKLRTL
Sbjct: 61 LKLRTL 66

[Close]

BLAST of CSPI05G00350 vs. NCBI nr
Match: gi|778698014|ref|XP_011654462.1| (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X6 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 19  YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL
Sbjct: 98  YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 145

[Close]

BLAST of CSPI05G00350 vs. NCBI nr
Match: gi|778698011|ref|XP_011654461.1| (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X5 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 19  YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL
Sbjct: 127 YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 174

[Close]

BLAST of CSPI05G00350 vs. NCBI nr
Match: gi|778698005|ref|XP_011654459.1| (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130 isoform X3 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 19  YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL
Sbjct: 175 YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 222

[Close]

BLAST of CSPI05G00350 vs. NCBI nr
Match: gi|778698002|ref|XP_011654458.1| (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130 isoform X2 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1


Query: 19  YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 67
           YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL
Sbjct: 199 YLDSSGVQGDIPTTFSNLTNLQTVLASDNKLTGEIPGFIGSWLKLRTL 246

The following BLAST results are available for this feature:

BLAST of CSPI05G00350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5614_ARATH	1.4e-08	48.15	Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidop...	[more]
Y1561_ARATH	2.0e-07	46.30	Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidop...	[more]
Y1534_ARATH	8.6e-06	48.94	Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidop...	[more]

BLAST of CSPI05G00350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIP6_CUCSA	4.3e-28	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G011750 PE=4 SV=1	[more]
B9HGV2_POPTR	1.1e-10	66.04	Leucine-rich repeat family protein OS=Populus trichocarpa GN=POPTR_0007s08160g P...	[more]
A0A061FAZ5_THECC	1.1e-10	66.67	Leucine-rich repeat transmembrane protein kinase OS=Theobroma cacao GN=TCM_03266...	[more]
A5C3M3_VITVI	1.8e-10	61.11	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034202 PE=4 SV=1	[more]
B9RI14_RICCO	4.0e-10	62.96	ATP binding protein, putative OS=Ricinus communis GN=RCOM_1575290 PE=4 SV=1	[more]

BLAST of CSPI05G00350 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56145.2	4.7e-10	52.08	Leucine-rich repeat transmembrane protein kinase	[more]
AT1G56140.1	8.0e-10	48.15	Leucine-rich repeat transmembrane protein kinase	[more]
AT1G56120.1	6.8e-09	48.15	Leucine-rich repeat transmembrane protein kinase	[more]
AT1G56130.1	1.2e-08	46.30	Leucine-rich repeat transmembrane protein kinase	[more]
AT1G53420.1	4.8e-07	48.94	Leucine-rich repeat transmembrane protein kinase	[more]

BLAST of CSPI05G00350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194408\|gb\|KGN49585.1\|	6.1e-28	100.00	hypothetical protein Csa_5G011750 [Cucumis sativus]	[more]
gi\|778698014\|ref\|XP_011654462.1\|	1.2e-18	100.00	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 ...	[more]
gi\|778698011\|ref\|XP_011654461.1\|	1.2e-18	100.00	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 ...	[more]
gi\|778698005\|ref\|XP_011654459.1\|	1.2e-18	100.00	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130 ...	[more]
gi\|778698002\|ref\|XP_011654458.1\|	1.2e-18	100.00	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000165	MAPK cascade
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G00350.1	CSPI05G00350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR27006	FAMILY NOT NAMED	coord: 19..66 score: 2.1
None	No IPR available	PANTHER	PTHR27006:SF44	LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE	coord: 19..66 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G00350	Csa5G011750	Cucumber (Chinese Long) v2	cpicuB240

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G00350	Cucumber (Chinese Long) v3	cpicucB286
CSPI05G00350	Watermelon (97103) v2	cpiwmbB376
CSPI05G00350	Cucumber (Gy14) v1	cgycpiB494
CSPI05G00350	Melon (DHL92) v3.5.1	cpimeB378
CSPI05G00350	Watermelon (Charleston Gray)	cpiwcgB371
CSPI05G00350	Watermelon (97103) v1	cpiwmB451
CSPI05G00350	Bottle gourd (USVL1VR-Ls)	cpilsiB343
CSPI05G00350	Melon (DHL92) v3.6.1	cpimedB358
CSPI05G00350	Cucumber (Gy14) v2	cgybcpiB227
CSPI05G00350	Silver-seed gourd	carcpiB0704