CSPI05G00050 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G00050
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ulp1 peptidase-like
Location	Chr5 : 71578 .. 72255 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCTCTGATTGACGACTGGGAGGACTTCATCAGGTACGATTGGGGTGAGTTGGTATGGACCAAGACCTTTACTTGCTTGAAAAGGGCACTTCATGGCAAAGTAGTCTTACATAAGAAAAAATTTGTTAATAACAAGTCCCCGAAGTCATATAGCCTCAATGGACTTCCCTTTGCCTTTCAGGTTAGTGATTATATGCTCACTGTATTTTATTGATTTCATTAGCAATGTGTTTTATTGATTTCATTAGTTATACGCTTATGTTAACGATATCATTGTATTTGTAGATTTGGGCCTACTAGATAGTGTTGTCCATCAGTGGTTGGGTTGCTCATAGGGAAACATCATCTGCGATACCATGCATCATGCGGTTGAGCTGCACACACTTACCTGGGTTGAAGGTGATTTAAGTCCTAGGCCTTCGAGTCACAAATGGTATGTTATGATTCATCTTCTTCCTCCACATTCACTATAGTATTCTAGGGTTTAGTCTCTTAATTAGCACCTGTTGATGTTCTATATTTAGGCCCGGATACATTAGTTGAACCTACAAATGATGAGTGTGCTTACCTTGATCAGACTCTCCTCCTCAACACTTCAAAATTCCCCTCCTCCTCCTCATGTCAATCATCCCTCTCCTCCTCCTCTTGCCCAACATCCTTGGGTGACATGTGA

mRNA sequence

ATGTTGGCTCTGATTGACGACTGGGAGGACTTCATCAGGTACGATTGGGGTGAGTTGGTATGGACCAAGACCTTTACTTGCTTGAAAAGGGCACTTCATGGCAAAGTAGTCTTACATAAGAAAAAATTTGTTAATAACAAGTCCCCGAAGTCATATAGCCTCAATGGACTTCCCTTTGCCTTTCAGGGAAACATCATCTGCGATACCATGCATCATGCGGTTGAGCTGCACACACTTACCTGGGTTGAAGGCCCGGATACATTAGTTGAACCTACAAATGATGAGTGTGCTTACCTTGATCAGACTCTCCTCCTCAACACTTCAAAATTCCCCTCCTCCTCCTCATGTCAATCATCCCTCTCCTCCTCCTCTTGCCCAACATCCTTGGGTGACATGTGA

Coding sequence (CDS)

ATGTTGGCTCTGATTGACGACTGGGAGGACTTCATCAGGTACGATTGGGGTGAGTTGGTATGGACCAAGACCTTTACTTGCTTGAAAAGGGCACTTCATGGCAAAGTAGTCTTACATAAGAAAAAATTTGTTAATAACAAGTCCCCGAAGTCATATAGCCTCAATGGACTTCCCTTTGCCTTTCAGGGAAACATCATCTGCGATACCATGCATCATGCGGTTGAGCTGCACACACTTACCTGGGTTGAAGGCCCGGATACATTAGTTGAACCTACAAATGATGAGTGTGCTTACCTTGATCAGACTCTCCTCCTCAACACTTCAAAATTCCCCTCCTCCTCCTCATGTCAATCATCCCTCTCCTCCTCCTCTTGCCCAACATCCTTGGGTGACATGTGA

Homology

[Close]

BLAST of CSPI05G00050 vs. TrEMBL
Match: A0A0A0KIM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G001020 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.7e-29
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 1  MLALIDDWEDFIRYDWGELVWTKTFTCLKRALHGKVVLHKKKFVNNKSPKSYSLNGLPFA 60
          MLALIDDWEDFIRYDWGELVWTKTF CLKRALHGKVVLHKKKFVNNKSPKSYSLNGLPFA
Sbjct: 1  MLALIDDWEDFIRYDWGELVWTKTFACLKRALHGKVVLHKKKFVNNKSPKSYSLNGLPFA 60

Query: 61 FQ 63
          FQ
Sbjct: 61 FQ 62

[Close]

BLAST of CSPI05G00050 vs. TrEMBL
Match: A0A0A0K9T0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G329360 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.6e-10
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1  MLALIDDWEDFIRYDWGELVWTKTFTCLKRALHGKVVLHKKKFVNNKSPKS 52
          ML+L+++WEDFI YD GEL+W KT   LK A +GKV LHKKK VNNKS +S
Sbjct: 13 MLSLVNNWEDFISYDCGELIWVKTLANLKGAFNGKVALHKKKPVNNKSSES 63

[Close]

BLAST of CSPI05G00050 vs. NCBI nr
Match: gi|700194378|gb|KGN49555.1| (hypothetical protein Csa_5G001020 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1


Query: 1  MLALIDDWEDFIRYDWGELVWTKTFTCLKRALHGKVVLHKKKFVNNKSPKSYSLNGLPFA 60
          MLALIDDWEDFIRYDWGELVWTKTF CLKRALHGKVVLHKKKFVNNKSPKSYSLNGLPFA
Sbjct: 1  MLALIDDWEDFIRYDWGELVWTKTFACLKRALHGKVVLHKKKFVNNKSPKSYSLNGLPFA 60

Query: 61 FQ 63
          FQ
Sbjct: 61 FQ 62

[Close]

BLAST of CSPI05G00050 vs. NCBI nr
Match: gi|700189318|gb|KGN44551.1| (hypothetical protein Csa_7G329360 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 5.1e-10
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1  MLALIDDWEDFIRYDWGELVWTKTFTCLKRALHGKVVLHKKKFVNNKSPKS 52
          ML+L+++WEDFI YD GEL+W KT   LK A +GKV LHKKK VNNKS +S
Sbjct: 13 MLSLVNNWEDFISYDCGELIWVKTLANLKGAFNGKVALHKKKPVNNKSSES 63

The following BLAST results are available for this feature:

BLAST of CSPI05G00050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G00050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIM1_CUCSA	7.7e-29	98.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G001020 PE=4 SV=1	[more]
A0A0A0K9T0_CUCSA	3.6e-10	64.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G329360 PE=4 SV=1	[more]

BLAST of CSPI05G00050 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI05G00050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194378\|gb\|KGN49555.1\|	1.1e-28	98.39	hypothetical protein Csa_5G001020 [Cucumis sativus]	[more]
gi\|700189318\|gb\|KGN44551.1\|	5.1e-10	64.71	hypothetical protein Csa_7G329360 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G00050.1	CSPI05G00050.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G00050	Cucumber (Gy14) v1	cgycpiB417
CSPI05G00050	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G00050	Cucumber (Gy14) v2	cgybcpiB227
CSPI05G00050	Cucumber (Chinese Long) v3	cpicucB286