CSPI04G27820 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G27820
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 24549666 .. 24550091 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCGACTTTAGAAAAACTCTCCAAGACAGTGGTGAAGGATGTGGGTTGCGTACTGTATCCAATCTTCTTCGTGTAATCAATCTCCACTTAAGCAAAGCGAAAGACAAACGCCTCAAGACCAAGAAAGAGGGAAAAGTAGAGGAAGTTAATGAAGTGGAGTCTAAAGAAAAAGAAGAAGAAGAAGAAGAAATGGAGGATGAAAAGCAAACCCCAGTTAAACGCAAGAGAAAAGGCAAGGACGAGACTTTAGGATCAAGAAAGAAAGTTAGGAAACTTGAAACCAATGACTCTAAGGATCCTTCATATCTTGTGGTCACCATAGTGCCAGATGACCAAATGCCTAAGAAAATCATCTCACCGTCGCCATCCAAAACCCTCAAGCCTAATAAATCCAAAACCACCACTTCACCGTCTAAAGTGTGA

mRNA sequence

ATGCCCGACTTTAGAAAAACTCTCCAAGACAGTGGTGAAGGATGTGGGTTGCGTACTGTATCCAATCTTCTTCGTGTAATCAATCTCCACTTAAGCAAAGCGAAAGACAAACGCCTCAAGACCAAGAAAGAGGGAAAAGTAGAGGAAGTTAATGAAGTGGAGTCTAAAGAAAAAGAAGAAGAAGAAGAAGAAATGGAGGATGAAAAGCAAACCCCAGTTAAACGCAAGAGAAAAGGCAAGGACGAGACTTTAGGATCAAGAAAGAAAGTTAGGAAACTTGAAACCAATGACTCTAAGGATCCTTCATATCTTGTGGTCACCATAGTGCCAGATGACCAAATGCCTAAGAAAATCATCTCACCGTCGCCATCCAAAACCCTCAAGCCTAATAAATCCAAAACCACCACTTCACCGTCTAAAGTGTGA

Coding sequence (CDS)

ATGCCCGACTTTAGAAAAACTCTCCAAGACAGTGGTGAAGGATGTGGGTTGCGTACTGTATCCAATCTTCTTCGTGTAATCAATCTCCACTTAAGCAAAGCGAAAGACAAACGCCTCAAGACCAAGAAAGAGGGAAAAGTAGAGGAAGTTAATGAAGTGGAGTCTAAAGAAAAAGAAGAAGAAGAAGAAGAAATGGAGGATGAAAAGCAAACCCCAGTTAAACGCAAGAGAAAAGGCAAGGACGAGACTTTAGGATCAAGAAAGAAAGTTAGGAAACTTGAAACCAATGACTCTAAGGATCCTTCATATCTTGTGGTCACCATAGTGCCAGATGACCAAATGCCTAAGAAAATCATCTCACCGTCGCCATCCAAAACCCTCAAGCCTAATAAATCCAAAACCACCACTTCACCGTCTAAAGTGTGA

Homology

[Close]

BLAST of CSPI04G27820 vs. TrEMBL
Match: A0A0A0LY93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G676915 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-06
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1


Query: 26  VINLHLSKAKDKRLKTKKEGKVEEVNEVESKEKEEEEEEMEDEKQTPVKRKRKGKDETLG 85
           +INLH +KAK+K LKTKK  KV E +EVE     E++EEMEDE Q+P+  KRKG +E   
Sbjct: 1   MINLHKNKAKNKHLKTKKTEKVIENHEVEI----EDDEEMEDEMQSPLICKRKGMEEVSR 60

Query: 86  SRKKVRKLETNDSKDPSYLVVTIVPDDQMPKKIISPSPSKTLKPNKSKTTTSP 139
           SRKK +K +  DS++P  LV+   P  Q      SP PSK L         +P
Sbjct: 61  SRKKKKKSKAKDSRNPIPLVIINPPTVQ--TTTTSPFPSKALNVTTFSNNPNP 107

[Close]

BLAST of CSPI04G27820 vs. NCBI nr
Match: gi|700211657|gb|KGN66753.1| (hypothetical protein Csa_1G676915 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 6.3e-06
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1


Query: 26  VINLHLSKAKDKRLKTKKEGKVEEVNEVESKEKEEEEEEMEDEKQTPVKRKRKGKDETLG 85
           +INLH +KAK+K LKTKK  KV E +EVE     E++EEMEDE Q+P+  KRKG +E   
Sbjct: 1   MINLHKNKAKNKHLKTKKTEKVIENHEVEI----EDDEEMEDEMQSPLICKRKGMEEVSR 60

Query: 86  SRKKVRKLETNDSKDPSYLVVTIVPDDQMPKKIISPSPSKTLKPNKSKTTTSP 139
           SRKK +K +  DS++P  LV+   P  Q      SP PSK L         +P
Sbjct: 61  SRKKKKKSKAKDSRNPIPLVIINPPTVQ--TTTTSPFPSKALNVTTFSNNPNP 107

The following BLAST results are available for this feature:

BLAST of CSPI04G27820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G27820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY93_CUCSA	4.4e-06	46.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G676915 PE=4 SV=1	[more]

BLAST of CSPI04G27820 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G27820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211657\|gb\|KGN66753.1\|	6.3e-06	46.02	hypothetical protein Csa_1G676915 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G27820.1	CSPI04G27820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 43..71 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G27820	CsaUNG018650	Cucumber (Chinese Long) v2	cpicuB180

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G27820	Cucurbita maxima (Rimu)	cmacpiB719
CSPI04G27820	Cucurbita maxima (Rimu)	cmacpiB720
CSPI04G27820	Cucurbita pepo (Zucchini)	cpecpiB404
CSPI04G27820	Cucurbita moschata (Rifu)	cmocpiB712
CSPI04G27820	Melon (DHL92) v3.5.1	cpimeB265
CSPI04G27820	Watermelon (Charleston Gray)	cpiwcgB345
CSPI04G27820	Watermelon (97103) v1	cpiwmB321
CSPI04G27820	Cucurbita pepo (Zucchini)	cpecpiB402
CSPI04G27820	Bottle gourd (USVL1VR-Ls)	cpilsiB294
CSPI04G27820	Melon (DHL92) v3.6.1	cpimedB261
CSPI04G27820	Cucumber (Gy14) v2	cgybcpiB223
CSPI04G27820	Silver-seed gourd	carcpiB0204
CSPI04G27820	Silver-seed gourd	carcpiB0701
CSPI04G27820	Cucumber (Chinese Long) v3	cpicucB235
CSPI04G27820	Watermelon (97103) v2	cpiwmbB335
CSPI04G27820	Wax gourd	cpiwgoB417