CSPI04G27820 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G27820
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 24549666 .. 24550091 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGACTTTAGAAAAACTCTCCAAGACAGTGGTGAAGGATGTGGGTTGCGTACTGTATCCAATCTTCTTCGTGTAATCAATCTCCACTTAAGCAAAGCGAAAGACAAACGCCTCAAGACCAAGAAAGAGGGAAAAGTAGAGGAAGTTAATGAAGTGGAGTCTAAAGAAAAAGAAGAAGAAGAAGAAGAAATGGAGGATGAAAAGCAAACCCCAGTTAAACGCAAGAGAAAAGGCAAGGACGAGACTTTAGGATCAAGAAAGAAAGTTAGGAAACTTGAAACCAATGACTCTAAGGATCCTTCATATCTTGTGGTCACCATAGTGCCAGATGACCAAATGCCTAAGAAAATCATCTCACCGTCGCCATCCAAAACCCTCAAGCCTAATAAATCCAAAACCACCACTTCACCGTCTAAAGTGTGA

mRNA sequence

ATGCCCGACTTTAGAAAAACTCTCCAAGACAGTGGTGAAGGATGTGGGTTGCGTACTGTATCCAATCTTCTTCGTGTAATCAATCTCCACTTAAGCAAAGCGAAAGACAAACGCCTCAAGACCAAGAAAGAGGGAAAAGTAGAGGAAGTTAATGAAGTGGAGTCTAAAGAAAAAGAAGAAGAAGAAGAAGAAATGGAGGATGAAAAGCAAACCCCAGTTAAACGCAAGAGAAAAGGCAAGGACGAGACTTTAGGATCAAGAAAGAAAGTTAGGAAACTTGAAACCAATGACTCTAAGGATCCTTCATATCTTGTGGTCACCATAGTGCCAGATGACCAAATGCCTAAGAAAATCATCTCACCGTCGCCATCCAAAACCCTCAAGCCTAATAAATCCAAAACCACCACTTCACCGTCTAAAGTGTGA

Coding sequence (CDS)

ATGCCCGACTTTAGAAAAACTCTCCAAGACAGTGGTGAAGGATGTGGGTTGCGTACTGTATCCAATCTTCTTCGTGTAATCAATCTCCACTTAAGCAAAGCGAAAGACAAACGCCTCAAGACCAAGAAAGAGGGAAAAGTAGAGGAAGTTAATGAAGTGGAGTCTAAAGAAAAAGAAGAAGAAGAAGAAGAAATGGAGGATGAAAAGCAAACCCCAGTTAAACGCAAGAGAAAAGGCAAGGACGAGACTTTAGGATCAAGAAAGAAAGTTAGGAAACTTGAAACCAATGACTCTAAGGATCCTTCATATCTTGTGGTCACCATAGTGCCAGATGACCAAATGCCTAAGAAAATCATCTCACCGTCGCCATCCAAAACCCTCAAGCCTAATAAATCCAAAACCACCACTTCACCGTCTAAAGTGTGA
Homology
[Close]
BLAST of CSPI04G27820 vs. TrEMBL
Match: A0A0A0LY93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G676915 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-06
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1 

Query: 26  VINLHLSKAKDKRLKTKKEGKVEEVNEVESKEKEEEEEEMEDEKQTPVKRKRKGKDETLG 85
           +INLH +KAK+K LKTKK  KV E +EVE     E++EEMEDE Q+P+  KRKG +E   
Sbjct: 1   MINLHKNKAKNKHLKTKKTEKVIENHEVEI----EDDEEMEDEMQSPLICKRKGMEEVSR 60

Query: 86  SRKKVRKLETNDSKDPSYLVVTIVPDDQMPKKIISPSPSKTLKPNKSKTTTSP 139
           SRKK +K +  DS++P  LV+   P  Q      SP PSK L         +P
Sbjct: 61  SRKKKKKSKAKDSRNPIPLVIINPPTVQ--TTTTSPFPSKALNVTTFSNNPNP 107

[Close]
BLAST of CSPI04G27820 vs. NCBI nr
Match: gi|700211657|gb|KGN66753.1| (hypothetical protein Csa_1G676915 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 6.3e-06
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1 

Query: 26  VINLHLSKAKDKRLKTKKEGKVEEVNEVESKEKEEEEEEMEDEKQTPVKRKRKGKDETLG 85
           +INLH +KAK+K LKTKK  KV E +EVE     E++EEMEDE Q+P+  KRKG +E   
Sbjct: 1   MINLHKNKAKNKHLKTKKTEKVIENHEVEI----EDDEEMEDEMQSPLICKRKGMEEVSR 60

Query: 86  SRKKVRKLETNDSKDPSYLVVTIVPDDQMPKKIISPSPSKTLKPNKSKTTTSP 139
           SRKK +K +  DS++P  LV+   P  Q      SP PSK L         +P
Sbjct: 61  SRKKKKKSKAKDSRNPIPLVIINPPTVQ--TTTTSPFPSKALNVTTFSNNPNP 107

The following BLAST results are available for this feature:
BLAST of CSPI04G27820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G27820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY93_CUCSA4.4e-0646.02Uncharacterized protein OS=Cucumis sativus GN=Csa_1G676915 PE=4 SV=1[more]
BLAST of CSPI04G27820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G27820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211657|gb|KGN66753.1|6.3e-0646.02hypothetical protein Csa_1G676915 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G27820.1CSPI04G27820.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 43..71
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G27820CsaUNG018650Cucumber (Chinese Long) v2cpicuB180
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G27820Melon (DHL92) v3.6.1cpimedB261
CSPI04G27820Cucumber (Gy14) v2cgybcpiB223
CSPI04G27820Silver-seed gourdcarcpiB0204
CSPI04G27820Silver-seed gourdcarcpiB0701
CSPI04G27820Cucumber (Chinese Long) v3cpicucB235
CSPI04G27820Watermelon (97103) v2cpiwmbB335
CSPI04G27820Wax gourdcpiwgoB417
CSPI04G27820Cucurbita maxima (Rimu)cmacpiB719
CSPI04G27820Cucurbita maxima (Rimu)cmacpiB720
CSPI04G27820Cucurbita pepo (Zucchini)cpecpiB404
CSPI04G27820Cucurbita moschata (Rifu)cmocpiB712
CSPI04G27820Melon (DHL92) v3.5.1cpimeB265
CSPI04G27820Watermelon (Charleston Gray)cpiwcgB345
CSPI04G27820Watermelon (97103) v1cpiwmB321
CSPI04G27820Cucurbita pepo (Zucchini)cpecpiB402
CSPI04G27820Bottle gourd (USVL1VR-Ls)cpilsiB294