CSPI04G27610 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G27610
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	At4g19430
Location	Chr4 : 24213680 .. 24214399 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAATAAAACTTCACCTTCTTAAGTAGACTTCATAAAGAAAAAGGGAAAAAAATCTTCTTCTTCTCAAAGCCTTCTCTTCCTATCATCCATTAATGTCCGTTTCCACCCAACTTCTAGAGCTCGGAAGGCTTGAGAAGAAGGGAAAAAAGAGGATCAAAAGAGAGAGTTTAAAGAGAGAAAACAATGGCTATTATTCATACAAGGATGTGAGTGACAATGAAGAGCATGGAGAGAGTAAGGGAAGAAGAAGAAGAAAAAGAAGAAAGAAGGGTCAATTTGGGACTACAAGAGATGTTCTTCACATGAATTTTTGGTATTTTACTTCAACAATCAGTCATATACTAAGGAAGGCAAAAGCCTTTTATAATGAGTGTTGCTGTGATGCCTTTGAAGATGAGAGGATGAAGAAGAATGAAGTGATTTCTATTGATCCTTATTTCTCAATGCCTGTTTTGCCTTATACTACTATGGCTAATTGTATGTAAAATGATATAAAGGCATAAGAATGAGTGATTTAACTACTAGTAAGTAGTAAGTGTGTTTGTAATTGAACCAACTTATTTGCGTGTCTATGCTTAGAACAATATTTGGGGTCCATTTTGGAACTCTTTTGAAACAAAAGGAAGAGCCTTTTTCCTTTTGTTTTCAACATTGTTTGTAAGAATTATGATTTGGTGGCTAGTAATAAGTTAATAAGTTCTAAAAATTATTATGTGC

mRNA sequence

ATGTCCGTTTCCACCCAACTTCTAGAGCTCGGAAGGCTTGAGAAGAAGGGAAAAAAGAGGATCAAAAGAGAGAGTTTAAAGAGAGAAAACAATGGCTATTATTCATACAAGGATGTGAGTGACAATGAAGAGCATGGAGAGAGTAAGGGAAGAAGAAGAAGAAAAAGAAGAAAGAAGGGTCAATTTGGGACTACAAGAGATGTTCTTCACATGAATTTTTGGTATTTTACTTCAACAATCAGTCATATACTAAGGAAGGCAAAAGCCTTTTATAATGAGTGTTGCTGTGATGCCTTTGAAGATGAGAGGATGAAGAAGAATGAAGTGATTTCTATTGATCCTTATTTCTCAATGCCTGTTTTGCCTTATACTACTATGGCTAATTGTATGTAA

Coding sequence (CDS)

ATGTCCGTTTCCACCCAACTTCTAGAGCTCGGAAGGCTTGAGAAGAAGGGAAAAAAGAGGATCAAAAGAGAGAGTTTAAAGAGAGAAAACAATGGCTATTATTCATACAAGGATGTGAGTGACAATGAAGAGCATGGAGAGAGTAAGGGAAGAAGAAGAAGAAAAAGAAGAAAGAAGGGTCAATTTGGGACTACAAGAGATGTTCTTCACATGAATTTTTGGTATTTTACTTCAACAATCAGTCATATACTAAGGAAGGCAAAAGCCTTTTATAATGAGTGTTGCTGTGATGCCTTTGAAGATGAGAGGATGAAGAAGAATGAAGTGATTTCTATTGATCCTTATTTCTCAATGCCTGTTTTGCCTTATACTACTATGGCTAATTGTATGTAA

Homology

[Close]

BLAST of CSPI04G27610 vs. TrEMBL
Match: A0A0A0L609_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G669230 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.1e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG 60
           MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG
Sbjct: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG 60

Query: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV 120
           QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV
Sbjct: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV 120

Query: 121 LPYTTMANCM 131
           LPYTTMANCM
Sbjct: 121 LPYTTMANCM 130

[Close]

BLAST of CSPI04G27610 vs. TrEMBL
Match: B9H054_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s10510g PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 50/146 (34.25%), Postives = 81/146 (55.48%), Query Frame = 1


Query: 3   VSTQLLELGRLE-KKGKKRIKRESL------------KRENNGYYSYKDVSDNEEHGESK 62
           ++TQ   L  L+ +KGKK+  R +             +R ++ Y  YK      E+G   
Sbjct: 1   MATQSDSLASLQLRKGKKQFTRSASHGERVTKSLPADRRSSSYYRQYKANDVRLENGSRA 60

Query: 63  G------RRRRKRRKKGQFGTTRDV-LHMNFWYFTSTISHILRKAKAFYNECCCD-AFED 122
           G      RR + +++K   G  R++  +++ WY +S+IS+ILRKA++FYNE CCD  F+D
Sbjct: 61  GDGKEMTRRNKLQKRKRDRGWARELPRYLDLWYMSSSISYILRKARSFYNEFCCDNYFDD 120

Query: 123 ERMKKNEVISIDPYFSMPVLPYTTMA 128
             +  +E++   PYFS PV+P  T+A
Sbjct: 121 SSIMGHELVLAGPYFSFPVIPPPTIA 146

[Close]

BLAST of CSPI04G27610 vs. TrEMBL
Match: V4T963_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002850mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 36/107 (33.64%), Postives = 61/107 (57.01%), Query Frame = 1


Query: 16  KGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKGQFGTTRDVLHMNFWY 75
           KG K+I   +  + +  +  +     N++H   KG++ + +RK   +   R    + FWY
Sbjct: 19  KGSKKIWPTTSHQHSERWTHHNSDQINDDH--VKGKKMKMKRKPKHWAQERS--RLGFWY 78

Query: 76  FTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPVLP 123
            T++I + LRKA+AFYNE C + ++D      +V+  DPYFS+PV+P
Sbjct: 79  VTTSIRYTLRKARAFYNEFCSEKYDDNPKVFKQVMIADPYFSIPVIP 121

[Close]

BLAST of CSPI04G27610 vs. TrEMBL
Match: A0A059CJL2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02579 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-07
Identity = 50/135 (37.04%), Postives = 73/135 (54.07%), Query Frame = 1


Query: 3   VSTQLLELGRL----------EKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRR 62
           ++TQL  L +L          + K  KR K      ++ G+  Y+ +   E HG++    
Sbjct: 1   MATQLSTLAKLHGPKSLSSCGQNKPIKRSKVRHCSEKDAGHDHYR-IECTELHGDTAFGE 60

Query: 63  RRKR--RKKGQFGTTRDVLHM-NFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNE- 122
           ++ +  R++G     RD   +   WY  S+I +IL KAKAFYNE CCDAFED  + KN+ 
Sbjct: 61  KKCQSWRRRG-----RDPPRLLGLWYLGSSIRYILMKAKAFYNEFCCDAFEDSLVVKNDG 120

[Close]

BLAST of CSPI04G27610 vs. TrEMBL
Match: V4MJ57_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026404mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.1e-07
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 1


Query: 25  SLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKGQFGT----TRDVLHMNF-WYFTST 84
           SL    N     ++    +EHG+      RK  K    G      R+V  ++  WY  S+
Sbjct: 67  SLLNLENQSVKEEERRSQQEHGKVSSYSSRKDGKSISTGKYEDMRREVARLSLLWYMKSS 126

Query: 85  ISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPVLPYTTM 127
           IS ILR+A+AFYNE CCD +    +  + ++ +DPYFS+PVLP+ ++
Sbjct: 127 ISFILRRARAFYNEFCCDTY----VASSTMVVVDPYFSVPVLPFNSL 169

[Close]

BLAST of CSPI04G27610 vs. TAIR10
Match: AT4G19430.1 (AT4G19430.1 unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-09
Identity = 31/86 (36.05%), Postives = 50/86 (58.14%), Query Frame = 1


Query: 37  KDVSDNEEHGESKGRRRRKRRKKGQFGTTRDVLHMNF-WYFTSTISHILRKAKAFYNECC 96
           ++ ++ +EHG+   +  +           RDV  ++  WY   +ISHILRKA+AFYNE C
Sbjct: 78  EEETNQQEHGKVSNKDGKSITATKYGDLRRDVARLSLLWYMKCSISHILRKARAFYNEFC 137

Query: 97  CDAFEDERMKKNEVISIDPYFSMPVL 122
           CD + +     N +  ++PYFS+PV+
Sbjct: 138 CDTYAE----SNTMAVVEPYFSIPVI 159

[Close]

BLAST of CSPI04G27610 vs. NCBI nr
Match: gi|700200413|gb|KGN55571.1| (hypothetical protein Csa_4G669230 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 1.5e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG 60
           MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG
Sbjct: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG 60

Query: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV 120
           QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV
Sbjct: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV 120

Query: 121 LPYTTMANCM 131
           LPYTTMANCM
Sbjct: 121 LPYTTMANCM 130

[Close]

BLAST of CSPI04G27610 vs. NCBI nr
Match: gi|224071483|ref|XP_002303482.1| (hypothetical protein POPTR_0003s10510g [Populus trichocarpa])

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 50/146 (34.25%), Postives = 81/146 (55.48%), Query Frame = 1


Query: 3   VSTQLLELGRLE-KKGKKRIKRESL------------KRENNGYYSYKDVSDNEEHGESK 62
           ++TQ   L  L+ +KGKK+  R +             +R ++ Y  YK      E+G   
Sbjct: 1   MATQSDSLASLQLRKGKKQFTRSASHGERVTKSLPADRRSSSYYRQYKANDVRLENGSRA 60

Query: 63  G------RRRRKRRKKGQFGTTRDV-LHMNFWYFTSTISHILRKAKAFYNECCCD-AFED 122
           G      RR + +++K   G  R++  +++ WY +S+IS+ILRKA++FYNE CCD  F+D
Sbjct: 61  GDGKEMTRRNKLQKRKRDRGWARELPRYLDLWYMSSSISYILRKARSFYNEFCCDNYFDD 120

Query: 123 ERMKKNEVISIDPYFSMPVLPYTTMA 128
             +  +E++   PYFS PV+P  T+A
Sbjct: 121 SSIMGHELVLAGPYFSFPVIPPPTIA 146

[Close]

BLAST of CSPI04G27610 vs. NCBI nr
Match: gi|567880625|ref|XP_006432871.1| (hypothetical protein CICLE_v10002850mg [Citrus clementina])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 36/107 (33.64%), Postives = 61/107 (57.01%), Query Frame = 1


Query: 16  KGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKGQFGTTRDVLHMNFWY 75
           KG K+I   +  + +  +  +     N++H   KG++ + +RK   +   R    + FWY
Sbjct: 19  KGSKKIWPTTSHQHSERWTHHNSDQINDDH--VKGKKMKMKRKPKHWAQERS--RLGFWY 78

Query: 76  FTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPVLP 123
            T++I + LRKA+AFYNE C + ++D      +V+  DPYFS+PV+P
Sbjct: 79  VTTSIRYTLRKARAFYNEFCSEKYDDNPKVFKQVMIADPYFSIPVIP 121

[Close]

BLAST of CSPI04G27610 vs. NCBI nr
Match: gi|702333160|ref|XP_010054918.1| (PREDICTED: uncharacterized protein LOC104443287 [Eucalyptus grandis])

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 50/135 (37.04%), Postives = 73/135 (54.07%), Query Frame = 1


Query: 3   VSTQLLELGRL----------EKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRR 62
           ++TQL  L +L          + K  KR K      ++ G+  Y+ +   E HG++    
Sbjct: 1   MATQLSTLAKLHGPKSLSSCGQNKPIKRSKVRHCSEKDAGHDHYR-IECTELHGDTAFGE 60

Query: 63  RRKR--RKKGQFGTTRDVLHM-NFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNE- 122
           ++ +  R++G     RD   +   WY  S+I +IL KAKAFYNE CCDAFED  + KN+ 
Sbjct: 61  KKCQSWRRRG-----RDPPRLLGLWYLGSSIRYILMKAKAFYNEFCCDAFEDSLVVKNDG 120

[Close]

BLAST of CSPI04G27610 vs. NCBI nr
Match: gi|567220700|ref|XP_006413979.1| (hypothetical protein EUTSA_v10026404mg [Eutrema salsugineum])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 1


Query: 25  SLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKGQFGT----TRDVLHMNF-WYFTST 84
           SL    N     ++    +EHG+      RK  K    G      R+V  ++  WY  S+
Sbjct: 67  SLLNLENQSVKEEERRSQQEHGKVSSYSSRKDGKSISTGKYEDMRREVARLSLLWYMKSS 126

Query: 85  ISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPVLPYTTM 127
           IS ILR+A+AFYNE CCD +    +  + ++ +DPYFS+PVLP+ ++
Sbjct: 127 ISFILRRARAFYNEFCCDTY----VASSTMVVVDPYFSVPVLPFNSL 169

The following BLAST results are available for this feature:

BLAST of CSPI04G27610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G27610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L609_CUCSA	1.1e-67	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G669230 PE=4 SV=1	[more]
B9H054_POPTR	1.7e-09	34.25	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s10510g PE=4 SV=1	[more]
V4T963_9ROSI	1.3e-07	33.64	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002850mg PE=4 SV=1	[more]
A0A059CJL2_EUCGR	2.1e-07	37.04	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02579 PE=4 SV=1	[more]
V4MJ57_EUTSA	8.1e-07	35.51	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026404mg PE=4 SV=1	[more]

BLAST of CSPI04G27610 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19430.1	2.0e-09	36.05	unknown protein	[more]

BLAST of CSPI04G27610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200413\|gb\|KGN55571.1\|	1.5e-67	100.00	hypothetical protein Csa_4G669230 [Cucumis sativus]	[more]
gi\|224071483\|ref\|XP_002303482.1\|	2.5e-09	34.25	hypothetical protein POPTR_0003s10510g [Populus trichocarpa]	[more]
gi\|567880625\|ref\|XP_006432871.1\|	1.8e-07	33.64	hypothetical protein CICLE_v10002850mg [Citrus clementina]	[more]
gi\|702333160\|ref\|XP_010054918.1\|	3.1e-07	37.04	PREDICTED: uncharacterized protein LOC104443287 [Eucalyptus grandis]	[more]
gi\|567220700\|ref\|XP_006413979.1\|	1.2e-06	35.51	hypothetical protein EUTSA_v10026404mg [Eutrema salsugineum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G27610.1	CSPI04G27610.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G27610	Cla023211	Watermelon (97103) v1	cpiwmB359
CSPI04G27610	Csa4G669230	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G27610	MELO3C010540	Melon (DHL92) v3.5.1	cpimeB319
CSPI04G27610	ClCG11G016220	Watermelon (Charleston Gray)	cpiwcgB292
CSPI04G27610	Lsi04G018590	Bottle gourd (USVL1VR-Ls)	cpilsiB289
CSPI04G27610	MELO3C010540.2	Melon (DHL92) v3.6.1	cpimedB311
CSPI04G27610	CsaV3_4G037920	Cucumber (Chinese Long) v3	cpicucB212
CSPI04G27610	Cla97C11G222170	Watermelon (97103) v2	cpiwmbB288
CSPI04G27610	Bhi09G002350	Wax gourd	cpiwgoB427
CSPI04G27610	Cucsa.191620	Cucumber (Gy14) v1	cgycpiB302
CSPI04G27610	CmaCh01G013450	Cucurbita maxima (Rimu)	cmacpiB482

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G27610	Cucumber (Gy14) v2	cgybcpiB169
CSPI04G27610	Wax gourd	cpiwgoB418