CSPI04G26800 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G26800
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPentatricopeptide repeat-containing protein
LocationChr4 : 23767496 .. 23768093 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGAAAATTGCACACATTTTATGGTATTTAATAGTTTTAAATTAGATTTTCTCTTTTATTTATCAAATTTATATTTTTATTAAATAAATTATAATTCAACTGACGTAAGACTTTTATTTTAATCTAGGGATCATAAGTTTGATTCTCCTTCTCATCGTAGTTTTCATTATTCTCATTGTCAAATTCCATTTATTTTGCCATACGCCTCTTCATTCTCTGTTCCTCAAGAAAAATTGTTGATTGTTTCAACTTTAAGAACGATTGATTTCAGAAATCCCCCCTTCCCTAGTCTTGATTTATTAGCTAGAGGCTTTTGCGATTTGAGTAATCCTGATTCTGATTCTGAAATTGAATGTGAGAAGAGTGAGGAGGATGATAATCGTGAGTGTGATTCGACTGAAGTCAATCGCGTATGCAAGGTGATCGACGAATTGTTTGCATTAGATAGGAACATGGAGGCAGTTCTTGATGAGTGTGGGGTAAAATTGTCTCATGATCTGGTTTTGGAGGTCTTAGCAAGGTTCAAACAAGCTCGAAAACCGGCATTTCGATTCTTCTGTTGGGCTGCTCAGAAGCCAGGATTTGCCCATTAA

mRNA sequence

ATGAATCGAAAATTGCACACATTTTATGCTAGAGGCTTTTGCGATTTGAGTAATCCTGATTCTGATTCTGAAATTGAATGTGAGAAGAGTGAGGAGGATGATAATCGTGAGTGTGATTCGACTGAAGTCAATCGCGTATGCAAGGTGATCGACGAATTGTTTGCATTAGATAGGAACATGGAGGCAGTTCTTGATGAGTGTGGGGTAAAATTGTCTCATGATCTGGTTTTGGAGGTCTTAGCAAGGTTCAAACAAGCTCGAAAACCGGCATTTCGATTCTTCTGTTGGGCTGCTCAGAAGCCAGGATTTGCCCATTAA

Coding sequence (CDS)

ATGAATCGAAAATTGCACACATTTTATGCTAGAGGCTTTTGCGATTTGAGTAATCCTGATTCTGATTCTGAAATTGAATGTGAGAAGAGTGAGGAGGATGATAATCGTGAGTGTGATTCGACTGAAGTCAATCGCGTATGCAAGGTGATCGACGAATTGTTTGCATTAGATAGGAACATGGAGGCAGTTCTTGATGAGTGTGGGGTAAAATTGTCTCATGATCTGGTTTTGGAGGTCTTAGCAAGGTTCAAACAAGCTCGAAAACCGGCATTTCGATTCTTCTGTTGGGCTGCTCAGAAGCCAGGATTTGCCCATTAA
Homology
[Close]
BLAST of CSPI04G26800 vs. Swiss-Prot
Match: PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-24
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1 

Query: 20  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDL 79
           D + E EC+  EE      +S+    EV RVCKVIDELFALDRNMEAVLDE  + LSHDL
Sbjct: 104 DEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDL 163

Query: 80  VLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           ++EVL RF+ ARKPAFRFFCWAA++ GFAH
Sbjct: 164 IVEVLERFRHARKPAFRFFCWAAERQGFAH 193

[Close]
BLAST of CSPI04G26800 vs. Swiss-Prot
Match: PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-24
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1 

Query: 20  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDL 79
           D + E EC+  EE      +S+    EV RVCKVIDELFALDRNMEAVLDE  + LSHDL
Sbjct: 104 DEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDL 163

Query: 80  VLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           ++EVL RF+ ARKPAFRFFCWAA++ GFAH
Sbjct: 164 IVEVLERFRHARKPAFRFFCWAAERQGFAH 193

[Close]
BLAST of CSPI04G26800 vs. Swiss-Prot
Match: PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-24
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1 

Query: 20  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDL 79
           D + E EC+  EE      +S+    EV RVCKVIDELFALDRNMEAVLDE  + LSHDL
Sbjct: 103 DEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDL 162

Query: 80  VLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           ++EVL RF+ ARKPAFRFFCWAA++ GFAH
Sbjct: 163 IVEVLERFRHARKPAFRFFCWAAERQGFAH 192

[Close]
BLAST of CSPI04G26800 vs. TrEMBL
Match: A0A0A0LK05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034550 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.0e-47
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 10  ARGFCDLSNPDSDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGV 69
           ARGFCDLSNPDSDSEIECEKSEE+DNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGV
Sbjct: 112 ARGFCDLSNPDSDSEIECEKSEEEDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGV 171

Query: 70  KLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           KLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
Sbjct: 172 KLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 207

[Close]
BLAST of CSPI04G26800 vs. TrEMBL
Match: B9I9J7_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0014s11650g PE=4 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 6.8e-28
Identity = 66/106 (62.26%), Postives = 78/106 (73.58%), Query Frame = 1 

Query: 11  RGFCDLSNPDSDSEIECEKSEEDDNRE-----------CDSTEVNRVCKVIDELFALDRN 70
           R F   SN D+DS+ E ++++E DN E            D  EV++VCKVIDELFALD N
Sbjct: 105 RWFSSSSNDDTDSDAENDENDESDNCERENKGAIVKSTADPAEVHKVCKVIDELFALDHN 164

Query: 71  MEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           MEAVLDECG+ LSHDLV+EVL RF+ ARKPAFRFFCWAA+KPGF H
Sbjct: 165 MEAVLDECGINLSHDLVIEVLERFRHARKPAFRFFCWAAEKPGFVH 210

[Close]
BLAST of CSPI04G26800 vs. TrEMBL
Match: M1CMN6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027516 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.4e-27
Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 11  RGFCDLSNPD----SDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDE 70
           RG C   + D    SD+++E E  E     + D  EV+RVCKVIDELF+LDRNMEAVLDE
Sbjct: 184 RGICSCVDNDGELESDNDVENESDERVAVSKADPKEVDRVCKVIDELFSLDRNMEAVLDE 243

Query: 71  CGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           CG+ LSHDLV++VL RFK ARKPAFRFFCWAAQ+PG+AH
Sbjct: 244 CGINLSHDLVVDVLERFKHARKPAFRFFCWAAQRPGYAH 282

[Close]
BLAST of CSPI04G26800 vs. TrEMBL
Match: A0A164VTZ2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021784 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.7e-27
Identity = 68/105 (64.76%), Postives = 77/105 (73.33%), Query Frame = 1 

Query: 3   RKLHTFYARGFCDLSNPD--SDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNM 62
           RK   F  RGFC L   +  SDSE ECE SE+ +  E D  EV RVCKVI+ELFALDRNM
Sbjct: 118 RKDLIFRPRGFCSLEGYEDPSDSEEECE-SEKVEKSEADLREVERVCKVIEELFALDRNM 177

Query: 63  EAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           EAVLDECG+ LSH LV++VL RFK ARKPAFRFFCWA  + G+ H
Sbjct: 178 EAVLDECGITLSHGLVVDVLERFKHARKPAFRFFCWAGNQEGYVH 221

[Close]
BLAST of CSPI04G26800 vs. TrEMBL
Match: A0A0V0IMI9_SOLCH (Putative pentatricopeptide repeat-containing protein, mitochondrial-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-26
Identity = 63/99 (63.64%), Postives = 75/99 (75.76%), Query Frame = 1 

Query: 11  RGFCDLSNPD----SDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDE 70
           RG C   + D    SD+++E E  E     + D  EV+ VCKVIDELF+LDRNMEAVLDE
Sbjct: 188 RGICSCVDNDGELESDNDVESESDERVAVSKADPKEVDTVCKVIDELFSLDRNMEAVLDE 247

Query: 71  CGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           CG+ LSHDLV++VL RFK ARKPAFRFFCWAAQ+PG+AH
Sbjct: 248 CGINLSHDLVVDVLERFKHARKPAFRFFCWAAQRPGYAH 286

[Close]
BLAST of CSPI04G26800 vs. TAIR10
Match: AT3G62470.1 (AT3G62470.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-25
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1 

Query: 20  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDL 79
           D + E EC+  EE      +S+    EV RVCKVIDELFALDRNMEAVLDE  + LSHDL
Sbjct: 104 DEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDL 163

Query: 80  VLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           ++EVL RF+ ARKPAFRFFCWAA++ GFAH
Sbjct: 164 IVEVLERFRHARKPAFRFFCWAAERQGFAH 193

[Close]
BLAST of CSPI04G26800 vs. TAIR10
Match: AT3G62540.1 (AT3G62540.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-25
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1 

Query: 20  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDL 79
           D + E EC+  EE      +S+    EV RVCKVIDELFALDRNMEAVLDE  + LSHDL
Sbjct: 104 DEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDL 163

Query: 80  VLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           ++EVL RF+ ARKPAFRFFCWAA++ GFAH
Sbjct: 164 IVEVLERFRHARKPAFRFFCWAAERQGFAH 193

[Close]
BLAST of CSPI04G26800 vs. TAIR10
Match: AT5G14820.1 (AT5G14820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-25
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1 

Query: 20  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDL 79
           D + E EC+  EE      +S+    EV RVCKVIDELFALDRNMEAVLDE  + LSHDL
Sbjct: 103 DEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDL 162

Query: 80  VLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           ++EVL RF+ ARKPAFRFFCWAA++ GFAH
Sbjct: 163 IVEVLERFRHARKPAFRFFCWAAERQGFAH 192

[Close]
BLAST of CSPI04G26800 vs. TAIR10
Match: AT5G15010.1 (AT5G15010.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-06
Identity = 26/84 (30.95%), Postives = 50/84 (59.52%), Query Frame = 1 

Query: 20  DSDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEV 79
           +SD ++ C  S+E       S +V ++ K++ +  +  + +   L+EC VK S++LV+E+
Sbjct: 79  ESDIDLGCSISDE-----LVSEDVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEI 138

Query: 80  LARFKQARKPAFRFFCWAAQKPGF 104
           L+R +   + AF FF WA ++ G+
Sbjct: 139 LSRVRNDWETAFTFFVWAGKQQGY 157

[Close]
BLAST of CSPI04G26800 vs. TAIR10
Match: AT1G73400.1 (AT1G73400.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.9e-06
Identity = 34/116 (29.31%), Postives = 56/116 (48.28%), Query Frame = 1 

Query: 1   MNRKLHTFYARGFCDLSNPDSDSEI-ECEKSEEDDNRE-CDSTEV-----NRVCKVIDEL 60
           +N+K+ +F    FC  +  + + EI   EK  ED +   C+  ++     N    ++ E 
Sbjct: 42  INKKISSFSVHRFCSTTLLNPELEITRIEKVSEDQSLVYCNENDIRTKGSNHAVGILHEA 101

Query: 61  FALDRN----MEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
              + N    ME  LDE  V L+  +V ++L R +   K AFRFF WA  +  ++H
Sbjct: 102 IMANLNAYDDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSH 157

[Close]
BLAST of CSPI04G26800 vs. NCBI nr
Match: gi|449454008|ref|XP_004144748.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-47
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 10  ARGFCDLSNPDSDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGV 69
           ARGFCDLSNPDSDSEIECEKSEE+DNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGV
Sbjct: 112 ARGFCDLSNPDSDSEIECEKSEEEDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGV 171

Query: 70  KLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           KLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
Sbjct: 172 KLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 207

[Close]
BLAST of CSPI04G26800 vs. NCBI nr
Match: gi|659070107|ref|XP_008453445.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 2.2e-40
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 1 

Query: 10  ARGFCDLSNPDSDSEIECEKSEEDDNRECD----STEVNRVCKVIDELFALDRNMEAVLD 69
           ARG+CDL+N DSDSEIECEKSE+DD RECD    STEV+RVCKVIDELFALDRNMEAVLD
Sbjct: 112 ARGYCDLNNSDSDSEIECEKSEDDD-RECDSRVDSTEVDRVCKVIDELFALDRNMEAVLD 171

Query: 70  ECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           ECGV+L+HDLVLEVLARFK+ARKPAFRFFCWAAQKPGFAH
Sbjct: 172 ECGVELTHDLVLEVLARFKRARKPAFRFFCWAAQKPGFAH 210

[Close]
BLAST of CSPI04G26800 vs. NCBI nr
Match: gi|743791425|ref|XP_011041294.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Populus euphratica])

HSP 1 Score: 131.7 bits (330), Expect = 7.4e-28
Identity = 67/113 (59.29%), Postives = 79/113 (69.91%), Query Frame = 1 

Query: 4   KLHTFYARGFCDLSNPDSDSEIECEKSEEDDNRE-----------CDSTEVNRVCKVIDE 63
           K+     R F   SN D+DS+ E E+++E D  E            D  EV++VCKVIDE
Sbjct: 138 KVSELSVRWFSSSSNDDTDSDAENEENDESDTCERENKGAIVKSTADPAEVHKVCKVIDE 197

Query: 64  LFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           LFALD NMEAVLDECG+ LSHDLV+EVL RF+ ARKPAFRFFCWAA+KPGF H
Sbjct: 198 LFALDHNMEAVLDECGINLSHDLVIEVLERFRHARKPAFRFFCWAAEKPGFVH 250

[Close]
BLAST of CSPI04G26800 vs. NCBI nr
Match: gi|566203812|ref|XP_002320305.2| (hypothetical protein POPTR_0014s11650g, partial [Populus trichocarpa])

HSP 1 Score: 131.3 bits (329), Expect = 9.7e-28
Identity = 66/106 (62.26%), Postives = 78/106 (73.58%), Query Frame = 1 

Query: 11  RGFCDLSNPDSDSEIECEKSEEDDNRE-----------CDSTEVNRVCKVIDELFALDRN 70
           R F   SN D+DS+ E ++++E DN E            D  EV++VCKVIDELFALD N
Sbjct: 105 RWFSSSSNDDTDSDAENDENDESDNCERENKGAIVKSTADPAEVHKVCKVIDELFALDHN 164

Query: 71  MEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           MEAVLDECG+ LSHDLV+EVL RF+ ARKPAFRFFCWAA+KPGF H
Sbjct: 165 MEAVLDECGINLSHDLVIEVLERFRHARKPAFRFFCWAAEKPGFVH 210

[Close]
BLAST of CSPI04G26800 vs. NCBI nr
Match: gi|697121930|ref|XP_009614951.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Nicotiana tomentosiformis])

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-27
Identity = 65/107 (60.75%), Postives = 77/107 (71.96%), Query Frame = 1 

Query: 2   NRKLHTFYARGFCDLSNPDSDSEIECEKSEEDDNR---ECDSTEVNRVCKVIDELFALDR 61
           N  L     RG C   + D + E + +   E D R   + D  EV+RVCKVIDELF+LDR
Sbjct: 116 NVNLLKLSCRGICSYVDNDGELESDNDVESESDERVESKADPKEVDRVCKVIDELFSLDR 175

Query: 62  NMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH 106
           NMEAVLDECG+ LSHDLV++VL RFK ARKPAFRFFCWAAQ+PG+AH
Sbjct: 176 NMEAVLDECGINLSHDLVVDVLERFKHARKPAFRFFCWAAQRPGYAH 222

The following BLAST results are available for this feature:
BLAST of CSPI04G26800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP293_ARATH3.8e-2464.44Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidop... [more]
PP294_ARATH3.8e-2464.44Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidop... [more]
PP382_ARATH3.8e-2464.44Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidop... [more]
BLAST of CSPI04G26800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LK05_CUCSA1.0e-4798.96Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034550 PE=4 SV=1[more]
B9I9J7_POPTR6.8e-2862.26Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0014s11650g P... [more]
M1CMN6_SOLTU4.4e-2764.65Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027516 PE=4 SV=1[more]
A0A164VTZ2_DAUCA5.7e-2764.76Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021784 PE=4 SV=1[more]
A0A0V0IMI9_SOLCH1.3e-2663.64Putative pentatricopeptide repeat-containing protein, mitochondrial-like OS=Sola... [more]
BLAST of CSPI04G26800 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G62470.12.1e-2564.44 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G62540.12.1e-2564.44 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G14820.12.1e-2564.44 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G15010.11.7e-0630.95 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G73400.12.9e-0629.31 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CSPI04G26800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454008|ref|XP_004144748.1|1.4e-4798.96PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-... [more]
gi|659070107|ref|XP_008453445.1|2.2e-4087.00PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-... [more]
gi|743791425|ref|XP_011041294.1|7.4e-2859.29PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-... [more]
gi|566203812|ref|XP_002320305.2|9.7e-2862.26hypothetical protein POPTR_0014s11650g, partial [Populus trichocarpa][more]
gi|697121930|ref|XP_009614951.1|2.8e-2760.75PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G26800.1CSPI04G26800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G26800Watermelon (97103) v2cpiwmbB287
CSPI04G26800Watermelon (97103) v2cpiwmbB343
CSPI04G26800Wax gourdcpiwgoB421
CSPI04G26800Wild cucumber (PI 183967)cpicpiB166
CSPI04G26800Cucumber (Gy14) v1cgycpiB409
CSPI04G26800Cucurbita maxima (Rimu)cmacpiB025
CSPI04G26800Cucurbita maxima (Rimu)cmacpiB188
CSPI04G26800Cucurbita maxima (Rimu)cmacpiB467
CSPI04G26800Cucurbita maxima (Rimu)cmacpiB811
CSPI04G26800Cucurbita moschata (Rifu)cmocpiB016
CSPI04G26800Cucurbita moschata (Rifu)cmocpiB456
CSPI04G26800Cucurbita moschata (Rifu)cmocpiB796
CSPI04G26800Cucumber (Chinese Long) v2cpicuB181
CSPI04G26800Cucumber (Chinese Long) v2cpicuB204
CSPI04G26800Melon (DHL92) v3.5.1cpimeB286
CSPI04G26800Melon (DHL92) v3.5.1cpimeB311
CSPI04G26800Watermelon (Charleston Gray)cpiwcgB290
CSPI04G26800Watermelon (97103) v1cpiwmB304
CSPI04G26800Watermelon (97103) v1cpiwmB357
CSPI04G26800Cucurbita pepo (Zucchini)cpecpiB573
CSPI04G26800Cucurbita pepo (Zucchini)cpecpiB789
CSPI04G26800Bottle gourd (USVL1VR-Ls)cpilsiB284
CSPI04G26800Bottle gourd (USVL1VR-Ls)cpilsiB320
CSPI04G26800Melon (DHL92) v3.6.1cpimedB281
CSPI04G26800Melon (DHL92) v3.6.1cpimedB302
CSPI04G26800Cucumber (Gy14) v2cgybcpiB169
CSPI04G26800Silver-seed gourdcarcpiB0118
CSPI04G26800Silver-seed gourdcarcpiB0393
CSPI04G26800Cucumber (Chinese Long) v3cpicucB212
CSPI04G26800Cucumber (Chinese Long) v3cpicucB245