CSPI04G25920 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G25920
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 23165266 .. 23165912 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGTTTGGAAAGCATAAAGGAGGATCCCATAACCATCTATCATATTGGTAGGGATTGCAATCATCTTTGGTACTTCTCTGTTTCACCTTTTGAGGTATTCTTGTATTTCATGCTTAGCAATGTTTGATACTTTTGTTGATTGAACACTCGATTCTTTTATCTTCTTTGTAATGAAGTTTAGCTTTGGCGTGTGAATGGCTTGAGTTTAGAGTTTTCTTTTTCTCTTTATTTCCCGGATTGATATAGATTGGGTCTTCACAAGCAAAATATTGAAAAGAAAATACCCCAACGAAACTTAGTATTCATCACAAAATTTTATTCGGCTATACACCATAAGAAGTAAGAGCAGGTGCTATGATCGTGAAGGAGAGACTCTGTTTAGCTGTTTGCTTGATTGAATGATCTTTTGGCTGCACCGCGTGCATCTACTGATATAGTTTACTAAGAACTTGTCAGCAAGTTTTTTTTCTATTTGAAAGAAATTTTAGATTTACTGTAACTTTGAAGTATTAAATTGATGTGCTTATAGAATCCATCTTTCATGTAGCACTATTCAGCCTTCAATTAAGTTTCTGTGGTTCGCAGGGATTTCATCAACTTCTGCAAGGCGTAGCAGAAGTCTCTGATGTTGAAAATTTCTGA

mRNA sequence

ATGGAGAGTTTGGAAAGCATAAAGGAGGATCCCATAACCATCTATCATATTGGTAGGGATTGCAATCATCTTTGGTACTTCTCTGTTTCACCTTTTGAGGGATTTCATCAACTTCTGCAAGGCGTAGCAGAAGTCTCTGATGTTGAAAATTTCTGA

Coding sequence (CDS)

ATGGAGAGTTTGGAAAGCATAAAGGAGGATCCCATAACCATCTATCATATTGGTAGGGATTGCAATCATCTTTGGTACTTCTCTGTTTCACCTTTTGAGGGATTTCATCAACTTCTGCAAGGCGTAGCAGAAGTCTCTGATGTTGAAAATTTCTGA
Homology
[Close]
BLAST of CSPI04G25920 vs. TrEMBL
Match: A0A0A0L466_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G650160 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.2e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENF 52
          MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENF
Sbjct: 1  MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENF 51

[Close]
BLAST of CSPI04G25920 vs. NCBI nr
Match: gi|700200239|gb|KGN55397.1| (hypothetical protein Csa_4G650160 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 6.0e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENF 52
          MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENF
Sbjct: 1  MESLESIKEDPITIYHIGRDCNHLWYFSVSPFEGFHQLLQGVAEVSDVENF 51

The following BLAST results are available for this feature:
BLAST of CSPI04G25920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G25920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L466_CUCSA4.2e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G650160 PE=4 SV=1[more]
BLAST of CSPI04G25920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G25920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200239|gb|KGN55397.1|6.0e-23100.00hypothetical protein Csa_4G650160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0006566 threonine metabolic process
biological_process GO:0006435 threonyl-tRNA aminoacylation
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0004829 threonine-tRNA ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G25920.1CSPI04G25920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G25920Csa4G650160Cucumber (Chinese Long) v2cpicuB181
CSPI04G25920CsaV3_4G036240Cucumber (Chinese Long) v3cpicucB212
CSPI04G25920Cucsa.271230Cucumber (Gy14) v1cgycpiB409
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G25920Cucurbita pepo (Zucchini)cpecpiB566
CSPI04G25920Cucurbita pepo (Zucchini)cpecpiB784
CSPI04G25920Bottle gourd (USVL1VR-Ls)cpilsiB291
CSPI04G25920Melon (DHL92) v3.6.1cpimedB302
CSPI04G25920Cucumber (Gy14) v2cgybcpiB169
CSPI04G25920Silver-seed gourdcarcpiB0666
CSPI04G25920Silver-seed gourdcarcpiB0807
CSPI04G25920Watermelon (97103) v2cpiwmbB315
CSPI04G25920Wax gourdcpiwgoB421
CSPI04G25920Cucurbita maxima (Rimu)cmacpiB020
CSPI04G25920Cucurbita maxima (Rimu)cmacpiB476
CSPI04G25920Cucurbita moschata (Rifu)cmocpiB011
CSPI04G25920Cucurbita moschata (Rifu)cmocpiB467
CSPI04G25920Melon (DHL92) v3.5.1cpimeB311
CSPI04G25920Watermelon (Charleston Gray)cpiwcgB326
CSPI04G25920Watermelon (97103) v1cpiwmB319
CSPI04G25920Watermelon (97103) v1cpiwmB325