CSPI04G22730 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G22730
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Glycine-rich protein family
Location	Chr4 : 21000212 .. 21001494 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAACCCAAAACTCCAACTCTCTATAAATTGATAGTGATAATGCAATGTTTAAGCACCAAAAAATAGCAAAGTAACTTAGCAAAAACACTTGGCATTTCCAACTTAGCTTTGTTAACCCAAAAATGACTTACCCTAAAACCCTTATCGGTTTCGGTCTCCTCCTCGCTCTTCTTTTCATCTCCTCACAGGTCTCCGCTCGTCTACTCGGTTAGTTTGCTTATACCAAACTCGCTCATAAATTTGTTGATAGTGTATTAAAAAGAATAAATATGTTTTTGTGTATTCATTTTTGGGTGAATGGTTGTAACTTTTGCAGGATACTAATGTACAAATTTATGAAAAGAAAAAAAAAGTGTTTAATTTATCATCGTTATAAAATAGTTGAGTATGTCATTGCATTTAATTTCATGTGAATATTCGACTCACATGAATTGAAAAATGTATTTATAGATAGCATAATGTTATTTTGTCTATCGCAATCTATTGCTCGGTGATAGAAGTCTTTTGTGATCTATCGTTGATAGATAATGACATTTTGGTATATTTAAAAATGTTTTCATCAGTTTTACTACTTTACAAAATTATCGGCCAACATTATATTGATTTTTTTTAAAAATAATAATTATGGTAGAGGAAGACAAAGTTAAGTCCGATGGCTTAGATTATCACGGAGGACGCTACGGCGGAGGAGGACACTACGGCGGAGGTCACTACGGCGGAGGAGGTCACTATGGTGGGGGTCACTATGGCGGAGGAGGTCACTATGGCGGAGGTCACTACGGTGGAGGTCACTATGGTGGAGGAGGTCACTACGGCGGGGGACACTATGGTGGAGGACATGGCCTTGATGCTAACACCAAAGAGTCAAATGACCAAGGTCTAGATAAACATGGCGGAGGACACGGTGGACACCACGGTGGAGGACATCATGGCCTTGATGCTGACGTGAAAAACTTGGACAGTCATGGCGGTGGCCACCACCACGACCACGGCCACCACCACTGCCACCACCCCCACTGCCCCGAGAGTGTTAAGAATTAGAACACTAAAACCTACTCCCCATCTGCAACCATGTTTGGTTCAAAATAAAAGCATCGTTGAAATAAAGTTTGTTTAATGTGTGTGTTGTGTTTTAAATTTAAATAAAGCATAAGATATGTTGTATGAAATGAGGATGATGCTAAATTATTATACTTCGGTTTATTACAACCTATGATCTTTCTAGTTTTCATATTATATATATGTGTAATGTCAAACTATATATAAACTCGATTTTACTTTG

mRNA sequence

ATGACTTACCCTAAAACCCTTATCGGTTTCGGTCTCCTCCTCGCTCTTCTTTTCATCTCCTCACAGGTCTCCGCTCGTCTACTCGAGGAAGACAAAGTTAAGTCCGATGGCTTAGATTATCACGGAGGACGCTACGGCGGAGGAGGACACTACGGCGGAGGTCACTACGGCGGAGGAGGTCACTATGGTGGGGGTCACTATGGCGGAGGAGGTCACTATGGCGGAGGTCACTACGGTGGAGGTCACTATGGTGGAGGAGGTCACTACGGCGGGGGACACTATGGTGGAGGACATGGCCTTGATGCTAACACCAAAGAGTCAAATGACCAAGGTCTAGATAAACATGGCGGAGGACACGGTGGACACCACGGTGGAGGACATCATGGCCTTGATGCTGACGTGAAAAACTTGGACAGTCATGGCGGTGGCCACCACCACGACCACGGCCACCACCACTGCCACCACCCCCACTGCCCCGAGAGTGTTAAGAATTAG

Coding sequence (CDS)

ATGACTTACCCTAAAACCCTTATCGGTTTCGGTCTCCTCCTCGCTCTTCTTTTCATCTCCTCACAGGTCTCCGCTCGTCTACTCGAGGAAGACAAAGTTAAGTCCGATGGCTTAGATTATCACGGAGGACGCTACGGCGGAGGAGGACACTACGGCGGAGGTCACTACGGCGGAGGAGGTCACTATGGTGGGGGTCACTATGGCGGAGGAGGTCACTATGGCGGAGGTCACTACGGTGGAGGTCACTATGGTGGAGGAGGTCACTACGGCGGGGGACACTATGGTGGAGGACATGGCCTTGATGCTAACACCAAAGAGTCAAATGACCAAGGTCTAGATAAACATGGCGGAGGACACGGTGGACACCACGGTGGAGGACATCATGGCCTTGATGCTGACGTGAAAAACTTGGACAGTCATGGCGGTGGCCACCACCACGACCACGGCCACCACCACTGCCACCACCCCCACTGCCCCGAGAGTGTTAAGAATTAG

Homology

[Close]

BLAST of CSPI04G22730 vs. TrEMBL
Match: A0A0A0L4K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625060 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.0e-62
Identity = 142/151 (94.04%), Postives = 142/151 (94.04%), Query Frame = 1


Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYHGGRYGGGGHYGGGHYGGGG 60
           MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDY GGRYGGGGHYGGGHYGGGG
Sbjct: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYPGGRYGGGGHYGGGHYGGGG 60

Query: 61  HYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDK------ 120
           HYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDK      
Sbjct: 61  HYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHG 120

Query: 121 --HGGGHGGHHGGGHHGLDADVKNLDSHGGG 144
             HGGGHGGHHGGGHHGLDADVKNLDSHGGG
Sbjct: 121 GHHGGGHGGHHGGGHHGLDADVKNLDSHGGG 151

[Close]

BLAST of CSPI04G22730 vs. TrEMBL
Match: C0Z2P2_ARATH (AT2G05440 protein OS=Arabidopsis thaliana GN=At2g05440 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-06
Identity = 77/146 (52.74%), Postives = 86/146 (58.90%), Query Frame = 1


Query: 5   KTLIGFGLLLALLFISSQVSARLL------EEDKVKSDGLDYHGGRYGGGGHYGGGHYGG 64
           K LI  GL   LL +S   +AR         E+ V+ +G  Y GG  G GGH GGG +G 
Sbjct: 4   KALILLGLFSVLLVVSEVSAARQSGMVKPESEETVQPEG--YGGGHGGHGGHGGGGGHGH 63

Query: 65  GGHYGGG--HYGGGG-HYGGG--HYGGG--HYGGGG--HYGGGHYGGGHGLDANTKESND 124
           GGHYGGG  HYGGGG HYGGG  HYGGG  HYGGGG  H GGGHYGGG G          
Sbjct: 64  GGHYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGGHGGGGHYGGGGG---------- 123

Query: 125 QGLDKHGGGHGGHHGGGHHGLDADVK 136
                +GGG GGHHGGG HGL+  V+
Sbjct: 124 ----GYGGG-GGHHGGGGHGLNEPVQ 132

[Close]

BLAST of CSPI04G22730 vs. TrEMBL
Match: Q9SL16_ARATH (At2g05510 OS=Arabidopsis thaliana GN=At2g05510 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-06
Identity = 73/140 (52.14%), Postives = 80/140 (57.14%), Query Frame = 1


Query: 5   KTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYHGGRYGG-GGHYGGGHYGGGGHYG 64
           K LI  GL   LL +S   +AR     K +S+      G +GG GGH GGGHYGGGGH  
Sbjct: 4   KALILLGLFAILLVVSEVSAARQSGMVKPESEATVQPEGYHGGHGGHGGGGHYGGGGHGH 63

Query: 65  GGHYGGGGH----YGGGHYGGGHY-GGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGG 124
           GGH GGGGH    YGGGH  GGHY GGGGHYGG   GGGHG                GGG
Sbjct: 64  GGHNGGGGHGLDGYGGGH--GGHYGGGGGHYGG---GGGHG----------------GGG 122

Query: 125 H---GGHHGGGHHGLDADVK 136
           H   GGHHGGG HGL+  V+
Sbjct: 124 HYGGGGHHGGGGHGLNEPVQ 122

[Close]

BLAST of CSPI04G22730 vs. TAIR10
Match: AT2G05510.1 (AT2G05510.1 Glycine-rich protein family)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-09
Identity = 73/140 (52.14%), Postives = 80/140 (57.14%), Query Frame = 1


Query: 5   KTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYHGGRYGG-GGHYGGGHYGGGGHYG 64
           K LI  GL   LL +S   +AR     K +S+      G +GG GGH GGGHYGGGGH  
Sbjct: 4   KALILLGLFAILLVVSEVSAARQSGMVKPESEATVQPEGYHGGHGGHGGGGHYGGGGHGH 63

Query: 65  GGHYGGGGH----YGGGHYGGGHY-GGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGG 124
           GGH GGGGH    YGGGH  GGHY GGGGHYGG   GGGHG                GGG
Sbjct: 64  GGHNGGGGHGLDGYGGGH--GGHYGGGGGHYGG---GGGHG----------------GGG 122

Query: 125 H---GGHHGGGHHGLDADVK 136
           H   GGHHGGG HGL+  V+
Sbjct: 124 HYGGGGHHGGGGHGLNEPVQ 122

[Close]

BLAST of CSPI04G22730 vs. TAIR10
Match: AT2G05440.2 (AT2G05440.2 GLYCINE RICH PROTEIN 9)

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-08
Identity = 79/153 (51.63%), Postives = 87/153 (56.86%), Query Frame = 1


Query: 5   KTLIGFGLLLALLFISSQVSARLLEEDKVKSD----------GLDYHGGRYGGGGHYGGG 64
           K LI  GL   LL +S   +AR     K +S+          G   HGG  GGGGH  GG
Sbjct: 4   KALILLGLFSVLLVVSEVSAARQSGMVKPESEETVQPEGYGGGHGGHGGHGGGGGHGHGG 63

Query: 65  HYGGGGHY------GGGHYGGGG-HYGGG--HYGGG--HYGGGG-HYGGGHYGGGHGLDA 124
           H GGGGH       GGGHYGGGG HYGGG  HYGGG  HYGGGG HYGGG  GGGHG   
Sbjct: 64  HNGGGGHGLDGYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGG--GGGHGGGG 123

Query: 125 NTKESNDQGLDKHGGGHGGHHGGGHHGLDADVK 136
           +       G   +GGG GGHHGGG HGL+  V+
Sbjct: 124 HY----GGGGGGYGGG-GGHHGGGGHGLNEPVQ 149

[Close]

BLAST of CSPI04G22730 vs. NCBI nr
Match: gi|778695682|ref|XP_011654035.1| (PREDICTED: ctenidin-3-like [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 1.4e-62
Identity = 142/151 (94.04%), Postives = 142/151 (94.04%), Query Frame = 1


Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYHGGRYGGGGHYGGGHYGGGG 60
           MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDY GGRYGGGGHYGGGHYGGGG
Sbjct: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYPGGRYGGGGHYGGGHYGGGG 60

Query: 61  HYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDK------ 120
           HYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDK      
Sbjct: 61  HYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGGHG 120

Query: 121 --HGGGHGGHHGGGHHGLDADVKNLDSHGGG 144
             HGGGHGGHHGGGHHGLDADVKNLDSHGGG
Sbjct: 121 GHHGGGHGGHHGGGHHGLDADVKNLDSHGGG 151

[Close]

BLAST of CSPI04G22730 vs. NCBI nr
Match: gi|659127549|ref|XP_008463760.1| (PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 2.0e-48
Identity = 127/166 (76.51%), Postives = 130/166 (78.31%), Query Frame = 1


Query: 1   MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYHGGRYGGGGHYGGG-HYGGG 60
           MTYPKTLIG GLLLALLFISSQVSARLLEEDKVK+DGLDYHGG YGGGGHYGGG HYGGG
Sbjct: 1   MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYGGGGHYGGGGHYGGG 60

Query: 61  GHYGGG-HYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGLDANTKESNDQGLDKHGGG 120
           GHYGGG HYGGGGHYGGGH        GGHYGGGHYGGGHGLDA+TK+ NDQGLD HGG 
Sbjct: 61  GHYGGGGHYGGGGHYGGGH--------GGHYGGGHYGGGHGLDADTKKLNDQGLDSHGG- 120

Query: 121 HGGHHGGGHHGLDADVKNLDSHGGGHHHDHGHHHCHHPHCPESVKN 165
              HHGGGH            HGGG      HHHCHHPHCPESVKN
Sbjct: 121 ---HHGGGH-----------GHGGG------HHHCHHPHCPESVKN 137

[Close]

BLAST of CSPI04G22730 vs. NCBI nr
Match: gi|727635313|ref|XP_010488761.1| (PREDICTED: cold and drought-regulated protein CORA-like isoform X2 [Camelina sativa])

HSP 1 Score: 72.4 bits (176), Expect = 8.3e-10
Identity = 80/155 (51.61%), Postives = 89/155 (57.42%), Query Frame = 1


Query: 5   KTLIGFGLLLALLFISSQVSARLL------EEDKVKSDGLDYHG---GRYGGGGHYGGG- 64
           K LI  GL   L+ +S   +AR         E+KV+ +G  + G   G YGGGGHYGGG 
Sbjct: 4   KALILLGLFAILVVVSEVSAARQSGMVKPESEEKVQPEGYGHGGHGGGHYGGGGHYGGGG 63

Query: 65  ---HYGGGG--HYGGG---------HYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGL 124
              HYGGGG  HYGGG         HYGGGGHYGGG  GGGHYGGGG  G GH GGGHGL
Sbjct: 64  GGGHYGGGGGGHYGGGGGHGGHGGGHYGGGGHYGGGG-GGGHYGGGG--GHGHGGGGHGL 123

Query: 125 DANTKESNDQGLDKHGGGHGGHHGGGHHGLDADVK 136
           D         G   HGGG G  HGGG HGL+  V+
Sbjct: 124 DGYGGHGGHGGHGGHGGGGGHGHGGGGHGLNEPVQ 155

[Close]

BLAST of CSPI04G22730 vs. NCBI nr
Match: gi|727635055|ref|XP_010488629.1| (PREDICTED: glycine-rich cell wall structural protein-like [Camelina sativa])

HSP 1 Score: 69.7 bits (169), Expect = 5.4e-09
Identity = 82/153 (53.59%), Postives = 91/153 (59.48%), Query Frame = 1


Query: 5   KTLIGFGLLLALLFISSQVSARLL------EEDKVKSDGLDYHG---GRYGGGGHYGGGH 64
           K LI  GL   L+ +S   +AR         E+KV+ +G  + G   G YGGGGHYGGG 
Sbjct: 4   KALILLGLFAILVVVSEVSAARQSGMVKPESEEKVQPEGYGHGGHGGGHYGGGGHYGGG- 63

Query: 65  YGGGGHY---GGGHYGGGGHYGGGHYGGGHYGGGGHYGG----GHYGGGHGLDANTKESN 124
            GGGGHY   GGGHYGGGG  GGGHYGGG  GGGGHYGG    GH GGGHGLD       
Sbjct: 64  -GGGGHYGGGGGGHYGGGG--GGGHYGGG--GGGGHYGGGGGHGHGGGGHGLD------- 123

Query: 125 DQGLDKHGG--GHGGHHGGGHHGLDADVKNLDS 140
             G   HGG  GHGG HGGG HGL+  V+   S
Sbjct: 124 --GYGGHGGHRGHGG-HGGGGHGLNEPVQTQPS 140

[Close]

BLAST of CSPI04G22730 vs. NCBI nr
Match: gi|1020118146|ref|WP_063251975.1| (hypothetical protein [Bacillus niacini])

HSP 1 Score: 65.9 bits (159), Expect = 7.8e-08
Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 1


Query: 41  HGGRYGGGGHYGGGHYGGGGHYGGGHYGGGGHYGGGHYGGGHYGGGGHYGGGHYGGGHGL 100
           HGG + GGGH+GG H+GGG H+GGGH+GGG H+GGGH+GGGH+GGG H+GGGH+GGGH  
Sbjct: 20  HGGGHHGGGHHGGSHHGGG-HHGGGHHGGG-HHGGGHHGGGHHGGG-HHGGGHHGGGH-- 79

Query: 101 DANTKESNDQGLDKHGGGH--GGHHGGGHHG 130
                         HGGGH  GGHHGGGHHG
Sbjct: 80  --------------HGGGHHGGGHHGGGHHG 91

The following BLAST results are available for this feature:

BLAST of CSPI04G22730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G22730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4K0_CUCSA	1.0e-62	94.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G625060 PE=4 SV=1	[more]
C0Z2P2_ARATH	6.6e-06	52.74	protein OS=Arabidopsis thaliana GN=At2g05440 PE=2 SV=1	[more]
Q9SL16_ARATH	6.6e-06	52.14	At2g05510 OS=Arabidopsis thaliana GN=At2g05510 PE=2 SV=1	[more]

BLAST of CSPI04G22730 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G05510.1	3.4e-09	52.14	Glycine-rich protein family	[more]
AT2G05440.2	2.2e-08	51.63	GLYCINE RICH PROTEIN 9	[more]

BLAST of CSPI04G22730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695682\|ref\|XP_011654035.1\|	1.4e-62	94.04	PREDICTED: ctenidin-3-like [Cucumis sativus]	[more]
gi\|659127549\|ref\|XP_008463760.1\|	2.0e-48	76.51	PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo]	[more]
gi\|727635313\|ref\|XP_010488761.1\|	8.3e-10	51.61	PREDICTED: cold and drought-regulated protein CORA-like isoform X2 [Camelina sat...	[more]
gi\|727635055\|ref\|XP_010488629.1\|	5.4e-09	53.59	PREDICTED: glycine-rich cell wall structural protein-like [Camelina sativa]	[more]
gi\|1020118146\|ref\|WP_063251975.1\|	7.8e-08	62.64	hypothetical protein [Bacillus niacini]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G22730.1	CSPI04G22730.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G22730	CsaV3_4G032970	Cucumber (Chinese Long) v3	cpicucB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G22730	Silver-seed gourd	carcpiB0345
CSPI04G22730	Silver-seed gourd	carcpiB0667
CSPI04G22730	Cucumber (Chinese Long) v3	cpicucB217
CSPI04G22730	Watermelon (97103) v2	cpiwmbB286
CSPI04G22730	Wax gourd	cpiwgoB421
CSPI04G22730	Cucumber (Gy14) v1	cgycpiB043
CSPI04G22730	Cucurbita maxima (Rimu)	cmacpiB024
CSPI04G22730	Cucurbita maxima (Rimu)	cmacpiB477
CSPI04G22730	Cucurbita moschata (Rifu)	cmocpiB015
CSPI04G22730	Cucurbita moschata (Rifu)	cmocpiB466
CSPI04G22730	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G22730	Melon (DHL92) v3.5.1	cpimeB293
CSPI04G22730	Watermelon (Charleston Gray)	cpiwcgB289
CSPI04G22730	Watermelon (97103) v1	cpiwmB356
CSPI04G22730	Cucurbita pepo (Zucchini)	cpecpiB567
CSPI04G22730	Cucurbita pepo (Zucchini)	cpecpiB788
CSPI04G22730	Bottle gourd (USVL1VR-Ls)	cpilsiB283
CSPI04G22730	Melon (DHL92) v3.6.1	cpimedB287
CSPI04G22730	Cucumber (Gy14) v2	cgybcpiB169