CSPI04G22510 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G22510
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	BED zinc finger,hAT family dimerization domain isoform 5
Location	Chr4 : 20791707 .. 20791976 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCATATTCAATCCGCTTTACAATGGGTGATCAAGGTTCAGCTTTGCGTGGAAGCACAGACAGGCAATGACTCTAGGCACAGGCTGAAGACCTTGAAAGAGTCCCTTCATGAAACTTCTCAAGGTCAGAGTGTGATGTCTGACTTGAACAGATATTTAGAAGGATCAGTGTTTCCTCGAAAATTCGATTTCAACTTAAACAAACATATTAAATTGATGAAAGGTCTACATGCAGAGGTAACCAATCTTGTCCATGATGGCTCGTGA

mRNA sequence

ATGATGCATATTCAATCCGCTTTACAATGGGTGATCAAGGTTCAGCTTTGCGTGGAAGCACAGACAGGCAATGACTCTAGGCACAGGCTGAAGACCTTGAAAGAGTCCCTTCATGAAACTTCTCAAGGTCAGAGTGTGATGTCTGACTTGAACAGATATTTAGAAGGATCAGTGTTTCCTCGAAAATTCGATTTCAACTTAAACAAACATATTAAATTGATGAAAGGTCTACATGCAGAGGTAACCAATCTTGTCCATGATGGCTCGTGA

Coding sequence (CDS)

ATGATGCATATTCAATCCGCTTTACAATGGGTGATCAAGGTTCAGCTTTGCGTGGAAGCACAGACAGGCAATGACTCTAGGCACAGGCTGAAGACCTTGAAAGAGTCCCTTCATGAAACTTCTCAAGGTCAGAGTGTGATGTCTGACTTGAACAGATATTTAGAAGGATCAGTGTTTCCTCGAAAATTCGATTTCAACTTAAACAAACATATTAAATTGATGAAAGGTCTACATGCAGAGGTAACCAATCTTGTCCATGATGGCTCGTGA

Homology

[Close]

BLAST of CSPI04G22510 vs. TrEMBL
Match: A0A0A0L1Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G624400 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.6e-08
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           TGN+SR RLK   + LHETSQ QSVMSDL++YLE  VFPR  DFN+
Sbjct: 739 TGNESRDRLKGFDKFLHETSQSQSVMSDLDKYLEEPVFPRNCDFNI 784

[Close]

BLAST of CSPI04G22510 vs. TrEMBL
Match: E0CS09_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00320 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-07
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNLNKHIKLMKGLHAEV 81
           T NDSR RLK   + +HETSQ Q+++SDL++YLE  VFPR  DF++    K+ K  +  +
Sbjct: 540 TSNDSRDRLKGFDKFIHETSQNQNIVSDLDKYLEEPVFPRNCDFHILNWWKVQKPRYPIL 599

Query: 82  TNLVHD 88
           + +V D
Sbjct: 600 SMMVRD 605

[Close]

BLAST of CSPI04G22510 vs. TrEMBL
Match: A5AGQ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006612 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-07
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNLNKHIKLMKGLHAEV 81
           T NDSR RLK   + +HETSQ Q+++SDL++YLE  VFPR  DF++    K+ K  +  +
Sbjct: 540 TSNDSRDRLKGFDKFIHETSQNQNIVSDLDKYLEEPVFPRNCDFHILNWWKVQKPRYPIL 599

Query: 82  TNLVHD 88
           + +V D
Sbjct: 600 SMMVRD 605

[Close]

BLAST of CSPI04G22510 vs. TrEMBL
Match: A0A0J8CMJ5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g084950 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1


Query: 23  GNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           G+DSR RLK   + LHETSQG++ +SDL +YLE  VFPR +DFN+
Sbjct: 541 GSDSRDRLKGFDKFLHETSQGKNAVSDLEKYLEEPVFPRNYDFNI 585

[Close]

BLAST of CSPI04G22510 vs. TrEMBL
Match: A0A0K9R0G8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127360 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1


Query: 23  GNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           G+DSR RLK   + LHETSQG++ +SDL++YLE  VFPR +DFN+
Sbjct: 541 GSDSRDRLKGFDKFLHETSQGKNSVSDLDKYLEEPVFPRNYDFNI 585

[Close]

BLAST of CSPI04G22510 vs. NCBI nr
Match: gi|778695647|ref|XP_011654029.1| (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           TGN+SR RLK   + LHETSQ QSVMSDL++YLE  VFPR  DFN+
Sbjct: 541 TGNESRDRLKGFDKFLHETSQSQSVMSDLDKYLEEPVFPRNCDFNI 586

[Close]

BLAST of CSPI04G22510 vs. NCBI nr
Match: gi|700199876|gb|KGN55034.1| (hypothetical protein Csa_4G624400 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           TGN+SR RLK   + LHETSQ QSVMSDL++YLE  VFPR  DFN+
Sbjct: 739 TGNESRDRLKGFDKFLHETSQSQSVMSDLDKYLEEPVFPRNCDFNI 784

[Close]

BLAST of CSPI04G22510 vs. NCBI nr
Match: gi|731431822|ref|XP_010644074.1| (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 6.1e-07
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNLNKHIKLMKGLHAEV 81
           T NDSR RLK   + +HETSQ Q+++SDL++YLE  VFPR  DF++    K+ K  +  +
Sbjct: 540 TSNDSRDRLKGFDKFIHETSQNQNIVSDLDKYLEEPVFPRNCDFHILNWWKVQKPRYPIL 599

Query: 82  TNLVHD 88
           + +V D
Sbjct: 600 SMMVRD 605

[Close]

BLAST of CSPI04G22510 vs. NCBI nr
Match: gi|147767977|emb|CAN60218.1| (hypothetical protein VITISV_006612 [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 6.1e-07
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNLNKHIKLMKGLHAEV 81
           T NDSR RLK   + +HETSQ Q+++SDL++YLE  VFPR  DF++    K+ K  +  +
Sbjct: 540 TSNDSRDRLKGFDKFIHETSQNQNIVSDLDKYLEEPVFPRNCDFHILNWWKVQKPRYPIL 599

Query: 82  TNLVHD 88
           + +V D
Sbjct: 600 SMMVRD 605

[Close]

BLAST of CSPI04G22510 vs. NCBI nr
Match: gi|1009162146|ref|XP_015899279.1| (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Ziziphus jujuba])

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1


Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           T ND+R RLK   + LHETSQ QSV+SDL +YLE  VFPR  DFN+
Sbjct: 542 TSNDTRDRLKGFDKFLHETSQSQSVISDLEKYLEEPVFPRNCDFNI 587

The following BLAST results are available for this feature:

BLAST of CSPI04G22510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G22510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1Z7_CUCSA	8.6e-08	67.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G624400 PE=4 SV=1	[more]
E0CS09_VITVI	4.3e-07	45.45	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g00320 PE=4 SV=...	[more]
A5AGQ6_VITVI	4.3e-07	45.45	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006612 PE=4 SV=1	[more]
A0A0J8CMJ5_BETVU	1.6e-06	60.00	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g084950 PE=4 S...	[more]
A0A0K9R0G8_SPIOL	2.1e-06	60.00	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127360 PE=4 SV=1	[more]

BLAST of CSPI04G22510 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G22510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695647\|ref\|XP_011654029.1\|	1.2e-07	67.39	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucumis...	[more]
gi\|700199876\|gb\|KGN55034.1\|	1.2e-07	67.39	hypothetical protein Csa_4G624400 [Cucumis sativus]	[more]
gi\|731431822\|ref\|XP_010644074.1\|	6.1e-07	45.45	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Vitis v...	[more]
gi\|147767977\|emb\|CAN60218.1\|	6.1e-07	45.45	hypothetical protein VITISV_006612 [Vitis vinifera]	[more]
gi\|1009162146\|ref\|XP_015899279.1\|	1.8e-06	63.04	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Ziziphu...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G22510.1	CSPI04G22510.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G22510	Lsi04G019790	Bottle gourd (USVL1VR-Ls)	cpilsiB283
CSPI04G22510	CsaV3_4G032860	Cucumber (Chinese Long) v3	cpicucB217
CSPI04G22510	Cla97C11G223260	Watermelon (97103) v2	cpiwmbB286
CSPI04G22510	CmaCh09G006780	Cucurbita maxima (Rimu)	cmacpiB024
CSPI04G22510	CmoCh09G006580	Cucurbita moschata (Rifu)	cmocpiB015
CSPI04G22510	CsGy4G021020	Cucumber (Gy14) v2	cgybcpiB169
CSPI04G22510	Carg03080	Silver-seed gourd	carcpiB0667

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G22510	Wax gourd	cpiwgoB421
CSPI04G22510	Cucumber (Gy14) v1	cgycpiB043
CSPI04G22510	Cucurbita maxima (Rimu)	cmacpiB477
CSPI04G22510	Cucurbita moschata (Rifu)	cmocpiB466
CSPI04G22510	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G22510	Melon (DHL92) v3.5.1	cpimeB293
CSPI04G22510	Watermelon (Charleston Gray)	cpiwcgB289
CSPI04G22510	Watermelon (97103) v1	cpiwmB356
CSPI04G22510	Cucurbita pepo (Zucchini)	cpecpiB567
CSPI04G22510	Cucurbita pepo (Zucchini)	cpecpiB788
CSPI04G22510	Bottle gourd (USVL1VR-Ls)	cpilsiB290
CSPI04G22510	Melon (DHL92) v3.6.1	cpimedB287
CSPI04G22510	Silver-seed gourd	carcpiB0345
CSPI04G22510	Cucumber (Chinese Long) v3	cpicucB212