CSPI04G22340 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G22340
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr4 : 20680619 .. 20681179 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTCTTGCCCATCAAGGTACTCTAATTCAACGCTCATGTCCTCATACATCTCAGCAAAATAGAAGAGTTGAACGCAAACATCGTCACATTCTTGACTCTGTTCGCGCTCAGCTTCTATCTGCTGCTTATTCAGAAAAATTCTGGGGCGAGGCTGCCCTCACCTCTGTCTATATCATCAATTGTCTTTCTTCAAAAGTCACTCACAATGTTTCCCCCTTTGAACGACTATACGGTACTTCCCCCTCTTACTTCAATCTCAAGATTTTTGGTTGTGCATGTTTCGTATTATTACATCCTCATGAACATACCAAACTTGAACCACGTGCATGTCTATGTTGTTTCTTGGGTTATGGTACTGAACATAAAGGATTTCGTTGTTGGGACCCCATCTCTCAACGATTATCTCGTCACGTTACCTTTTGGGAACATCGTCTGTTTTCTAGTCTTTCTTCATTCCATGAATTTCTTTCAAGTCCTCACCCATTCTTCATCGATCCTTCTATTGACCTCTTTCCCACACTTGACTCGCCGTCTGACACTACATCACATTGTGGG

mRNA sequence

ATGGAGTTTCTTGCCCATCAAGGTACTCTAATTCAACGCTCATGTCCTCATACATCTCAGCAAAATAGAAGAGTTGAACGCAAACATCGTCACATTCTTGACTCTGTTCGCGCTCAGCTTCTATCTGCTGCTTATTCAGAAAAATTCTGGGGCGAGGCTGCCCTCACCTCTGTCTATATCATCAATTGTCTTTCTTCAAAAGTCACTCACAATGTTTCCCCCTTTGAACGACTATACGGTACTTCCCCCTCTTACTTCAATCTCAAGATTTTTGGTTGTGCATGTTTCGTATTATTACATCCTCATGAACATACCAAACTTGAACCACGTGCATGTCTATGTTGTTTCTTGGGTTATGGTACTGAACATAAAGGATTTCGTTGTTGGGACCCCATCTCTCAACGATTATCTCGTCACGTTACCTTTTGGGAACATCGTCTGTTTTCTAGTCTTTCTTCATTCCATGAATTTCTTTCAAGTCCTCACCCATTCTTCATCGATCCTTCTATTGACCTCTTTCCCACACTTGACTCGCCGTCTGACACTACATCACATTGTGGG

Coding sequence (CDS)

ATGGAGTTTCTTGCCCATCAAGGTACTCTAATTCAACGCTCATGTCCTCATACATCTCAGCAAAATAGAAGAGTTGAACGCAAACATCGTCACATTCTTGACTCTGTTCGCGCTCAGCTTCTATCTGCTGCTTATTCAGAAAAATTCTGGGGCGAGGCTGCCCTCACCTCTGTCTATATCATCAATTGTCTTTCTTCAAAAGTCACTCACAATGTTTCCCCCTTTGAACGACTATACGGTACTTCCCCCTCTTACTTCAATCTCAAGATTTTTGGTTGTGCATGTTTCGTATTATTACATCCTCATGAACATACCAAACTTGAACCACGTGCATGTCTATGTTGTTTCTTGGGTTATGGTACTGAACATAAAGGATTTCGTTGTTGGGACCCCATCTCTCAACGATTATCTCGTCACGTTACCTTTTGGGAACATCGTCTGTTTTCTAGTCTTTCTTCATTCCATGAATTTCTTTCAAGTCCTCACCCATTCTTCATCGATCCTTCTATTGACCTCTTTCCCACACTTGACTCGCCGTCTGACACTACATCACATTGTGGG
Homology
[Close]
BLAST of CSPI04G22340 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.9e-20
Identity = 62/190 (32.63%), Postives = 95/190 (50.00%), Query Frame = 1 

Query: 2   EFLAHQGTLIQRSCPHTSQQNRRVERKHRHILDSVRAQLLSAAYSEKFWGEAALTSVYII 61
           E+ +  G   +++ P T Q N   ER +R I++ VR+ L  A   + FWGEA  T+ Y+I
Sbjct: 562 EYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLI 621

Query: 62  NCLSSKVTHNVSPFERLYGTSPSYFNLKIFGCACFVLLHPHEHTKLEPRACLCCFLGYGT 121
           N   S       P         SY +LK+FGC  F  +   + TKL+ ++  C F+GYG 
Sbjct: 622 NRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGD 681

Query: 122 EHKGFRCWDPISQRL--SRHVTFWEHRLFSSLSSFHEFLSSPHPFFID-PSIDLFPT-LD 181
           E  G+R WDP+ +++  SR V F E  + ++     +  +   P F+  PS    PT  +
Sbjct: 682 EEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAE 741

Query: 182 SPSDTTSHCG 188
           S +D  S  G
Sbjct: 742 STTDEVSEQG 751

[Close]
BLAST of CSPI04G22340 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 75.5 bits (184), Expect = 7.0e-13
Identity = 45/153 (29.41%), Postives = 79/153 (51.63%), Query Frame = 1 

Query: 2   EFLAHQGTLIQRSCPHTSQQNRRVERKHRHILDSVRAQLLSAAYSEKFWGEAALTSVYII 61
           +F   +G     + PHT Q N   ER  R I +  R  +  A   + FWGEA LT+ Y+I
Sbjct: 562 QFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLI 621

Query: 62  NCLSSK--VTHNVSPFERLYGTSPSYFNLKIFGCACFVLLHPHEHTKLEPRACLCCFLGY 121
           N + S+  V  + +P+E  +   P   +L++FG   +V +  ++  K + ++    F+GY
Sbjct: 622 NRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGY 681

Query: 122 GTEHKGFRCWDPISQR--LSRHVTFWEHRLFSS 151
             E  GF+ WD ++++  ++R V   E  + +S
Sbjct: 682 --EPNGFKLWDAVNEKFIVARDVVVDETNMVNS 711

[Close]
BLAST of CSPI04G22340 vs. TrEMBL
Match: A0A151SM08_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_002043 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.9e-64
Identity = 118/176 (67.05%), Postives = 142/176 (80.68%), Query Frame = 1 

Query: 1   MEFLAHQGTLIQRSCPHTSQQNRRVERKHRHILDSVRAQLLSAAYSEKFWGEAALTSVYI 60
           + FLA QGT  + SCP TSQQN R ERKHRHILDS+RA L+S++  E+ WGEAALT+VY+
Sbjct: 422 LHFLAEQGTTSEFSCPGTSQQNGRAERKHRHILDSIRAMLISSSCPERTWGEAALTAVYV 481

Query: 61  INCLSSKVTHNVSPFERLYGTSPSYFNLKIFGCACFVLLHPHEHTKLEPRACLCCFLGYG 120
           IN L S V  + +PFERL+GT PSY +L++FGCACFVLL PHE+TKL+PRA LCCFLGYG
Sbjct: 482 INRLPSSVLGDKTPFERLFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFLGYG 541

Query: 121 TEHKGFRCWDPISQ--RLSRHVTFWEHRLFSSLSSFHEFLSSPHPFFIDPSIDLFP 175
           TEHKG+R WDPISQ  R+SRHV FWEH++FSSLS+F    S+  P F +PSIDLFP
Sbjct: 542 TEHKGYRVWDPISQCIRISRHVVFWEHKMFSSLSTFKSIPSTSTPLFTNPSIDLFP 597

[Close]
BLAST of CSPI04G22340 vs. TrEMBL
Match: A0A151UDP3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047550 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 6.7e-63
Identity = 117/176 (66.48%), Postives = 141/176 (80.11%), Query Frame = 1 

Query: 1   MEFLAHQGTLIQRSCPHTSQQNRRVERKHRHILDSVRAQLLSAAYSEKFWGEAALTSVYI 60
           + FLA QGT  + SCP TSQQN R ERKHRHILDS+RA L+S++  E+ WGEAALT+VY+
Sbjct: 428 LHFLAEQGTTSEFSCPGTSQQNGRAERKHRHILDSIRAMLISSSCPERTWGEAALTAVYV 487

Query: 61  INCLSSKVTHNVSPFERLYGTSPSYFNLKIFGCACFVLLHPHEHTKLEPRACLCCFLGYG 120
           IN L S V  N +PFE L+GT PSY +L++FGCACFVLL PHE+TKL+PRA LCCFLGYG
Sbjct: 488 INRLPSSVLGNKTPFECLFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFLGYG 547

Query: 121 TEHKGFRCWDPISQ--RLSRHVTFWEHRLFSSLSSFHEFLSSPHPFFIDPSIDLFP 175
           TEHKG+R WDPISQ  R+SRHV FWEH++FSSLS+F    S+  P F +PSI+LFP
Sbjct: 548 TEHKGYRVWDPISQRIRISRHVVFWEHKMFSSLSTFKSIPSTSTPLFTNPSINLFP 603

[Close]
BLAST of CSPI04G22340 vs. TrEMBL
Match: A5AQN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034560 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-47
Identity = 96/173 (55.49%), Postives = 122/173 (70.52%), Query Frame = 1 

Query: 8   GTLIQRSCPHTSQQNRRVERKHRHILDSVRAQLLSAAYSEKFWGEAALTSVYIINCLSSK 67
           GT+   +CP TSQQN R ERK RHILD+VRA LLSA     FWGEA+L +V+ IN + S 
Sbjct: 535 GTIHHPTCPGTSQQNGRAERKLRHILDTVRALLLSAKIPAPFWGEASLHAVHAINRIPSA 594

Query: 68  VTHNVSPFERLYGTSPSYFNLKIFGCACFVLLHPHEHTKLEPRACLCCFLGYGTEHKGFR 127
           V HN +P+ERL+G+ P+Y +L+ FG ACFVLL PHEH KLEP++ LCCFLGYG   KG+R
Sbjct: 595 VIHNQTPYERLFGSPPNYHHLRSFGSACFVLLQPHEHNKLEPQSRLCCFLGYGETQKGYR 654

Query: 128 CWDPISQRL--SRHVTFWEHRLFSSLSSFHEFLSSPHPFFIDPSIDLFPTLDS 179
           C+DP+S RL  SR+V FWEHRLF  LS F   L++     I P   + P+ ++
Sbjct: 655 CYDPVSHRLRVSRNVVFWEHRLFVELSHFRSSLTNSSVLEIFPDESIVPSTNT 707

[Close]
BLAST of CSPI04G22340 vs. TrEMBL
Match: A5BVC1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 97/173 (56.07%), Postives = 120/173 (69.36%), Query Frame = 1 

Query: 8   GTLIQRSCPHTSQQNRRVERKHRHILDSVRAQLLSAAYSEKFWGEAALTSVYIINCLSSK 67
           GT+   +CP TSQQN R ERK RHILD VRA LLSA     FWGEA+L +V+ IN + S 
Sbjct: 625 GTIHHLTCPGTSQQNGRAERKLRHILDXVRALLLSAKIPAPFWGEASLHAVHAINRIPST 684

Query: 68  VTHNVSPFERLYGTSPSYFNLKIFGCACFVLLHPHEHTKLEPRACLCCFLGYGTEHKGFR 127
           V HN +P+ERL+G+ P+Y +L+ FG  CFVLL PHEH KLEPR+ LCCFLGYG   KG+R
Sbjct: 685 VIHNQTPYERLFGSPPNYHHLRSFGSXCFVLLQPHEHNKLEPRSRLCCFLGYGETQKGYR 744

Query: 128 CWDPISQRL--SRHVTFWEHRLFSSLSSFHEFLSSPHPFFIDPSIDLFPTLDS 179
           C+DP+S RL  SR+V FWEHRLF  LS F   L++     I P   L P+ ++
Sbjct: 745 CYDPVSHRLRVSRNVVFWEHRLFVELSHFRSSLTNSSVLEIFPDESLVPSANT 797

[Close]
BLAST of CSPI04G22340 vs. TrEMBL
Match: A5BN86_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033646 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.7e-47
Identity = 101/179 (56.42%), Postives = 120/179 (67.04%), Query Frame = 1 

Query: 8   GTLIQRSCPHTSQQNRRVERKHRHILDSVRAQLLSAAYSEKFWGEAALTSVYIINCLSSK 67
           GT+   +CP TSQQN R ERK RHILD+VRA LLSA     FWGEAAL +V+ IN + S 
Sbjct: 316 GTVHHLTCPGTSQQNGRAERKLRHILDTVRALLLSAKIPAPFWGEAALHAVHAINRIPSA 375

Query: 68  VTHNVSPFERLYGTSPSYFNLKIFGCACFVLLHPHEHTKLEPRACLCCFLGYGTEHKGFR 127
           V HN +P+ERL+G+ P Y +L+ FG ACFVLL  HEH KLEPR+ LCCFLGYG   KG+R
Sbjct: 376 VIHNQTPYERLFGSPPVYHHLRSFGSACFVLLQSHEHNKLEPRSRLCCFLGYGETQKGYR 435

Query: 128 CWDPISQRL--SRHVTFWEHRLFSSLSSFHEFLSSPHPFFIDPSIDLFP---TLDSPSD 182
           C+DP+S RL  S +V FWEHRLF  LS F   L++     I P   L P   T D P D
Sbjct: 436 CYDPVSHRLRVSHNVVFWEHRLFVELSHFRSSLTNSSVLEIFPDESLVPSTNTFDPPLD 494

[Close]
BLAST of CSPI04G22340 vs. NCBI nr
Match: gi|659082601|ref|XP_008441928.1| (PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo])

HSP 1 Score: 282.3 bits (721), Expect = 6.0e-73
Identity = 135/175 (77.14%), Postives = 144/175 (82.29%), Query Frame = 1 

Query: 7   QGTLIQRSCPHTSQQNRRVERKHRHILDSVRAQLLSAAYSEKFWGEAALTSVYIINCLSS 66
           QGTL+QRSCPHTSQQN R ERKHRHILDSVRA LLSA+  EKFWGEAALTSVY IN L S
Sbjct: 381 QGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVYTINRLPS 440

Query: 67  KVTHNVSPFERLYGTSPSYFNLKIFGCACFVLLHPHEHTKLEPRACLCCFLGYGTEHKGF 126
            V  N+SPFE+LYGT P+Y NLK FGCACFVLLHPHEHTKLEPR  L CFLGYGTEHKGF
Sbjct: 441 SVLQNISPFEKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLYCFLGYGTEHKGF 500

Query: 127 RCWDPISQRL--SRHVTFWEHRLFSSLSSFHEFLSSPHPFFIDPSIDLFPTLDSP 180
           RCW+P+S RL  SRHVTFWEH +FS LSSFH   SSP PFF D SID FP  +SP
Sbjct: 501 RCWNPLSNRLRISRHVTFWEHTMFSRLSSFHISFSSPQPFFTDTSIDFFPPSESP 555

[Close]
BLAST of CSPI04G22340 vs. NCBI nr
Match: gi|659120975|ref|XP_008460441.1| (PREDICTED: uncharacterized protein LOC103499253 [Cucumis melo])

HSP 1 Score: 263.5 bits (672), Expect = 2.9e-67
Identity = 128/174 (73.56%), Postives = 136/174 (78.16%), Query Frame = 1 

Query: 8   GTLIQRSCPHTSQQNRRVERKHRHILDSVRAQLLSAAYSEKFWGEAALTSVYIINCLSSK 67
           G L+QRSCPHTSQQN RVERKHR ILDSVR  LLSA+  EKFWGEAALT VY IN L S 
Sbjct: 440 GNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTYVYTINHLPSS 499

Query: 68  VTHNVSPFERLYGTSPSYFNLKIFGCACFVLLHPHEHTKLEPRACLCCFLGYGTEHKGFR 127
           V  N+SPFE+LYG   +Y NLK FGCACFVLLHPHEHTKLEPR  L  FLGYGTEHKGF 
Sbjct: 500 VLQNISPFEKLYGNPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFH 559

Query: 128 CWDPISQRL--SRHVTFWEHRLFSSLSSFHEFLSSPHPFFIDPSIDLFPTLDSP 180
           CWDP+S RL  SRHVTFWEH +FS LSSFH   SSP PFF D  IDLFP  +SP
Sbjct: 560 CWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTPIDLFPLSESP 613

[Close]
BLAST of CSPI04G22340 vs. NCBI nr
Match: gi|1012344626|gb|KYP55818.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-63
Identity = 118/176 (67.05%), Postives = 142/176 (80.68%), Query Frame = 1 

Query: 1   MEFLAHQGTLIQRSCPHTSQQNRRVERKHRHILDSVRAQLLSAAYSEKFWGEAALTSVYI 60
           + FLA QGT  + SCP TSQQN R ERKHRHILDS+RA L+S++  E+ WGEAALT+VY+
Sbjct: 422 LHFLAEQGTTSEFSCPGTSQQNGRAERKHRHILDSIRAMLISSSCPERTWGEAALTAVYV 481

Query: 61  INCLSSKVTHNVSPFERLYGTSPSYFNLKIFGCACFVLLHPHEHTKLEPRACLCCFLGYG 120
           IN L S V  + +PFERL+GT PSY +L++FGCACFVLL PHE+TKL+PRA LCCFLGYG
Sbjct: 482 INRLPSSVLGDKTPFERLFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFLGYG 541

Query: 121 TEHKGFRCWDPISQ--RLSRHVTFWEHRLFSSLSSFHEFLSSPHPFFIDPSIDLFP 175
           TEHKG+R WDPISQ  R+SRHV FWEH++FSSLS+F    S+  P F +PSIDLFP
Sbjct: 542 TEHKGYRVWDPISQCIRISRHVVFWEHKMFSSLSTFKSIPSTSTPLFTNPSIDLFP 597

[Close]
BLAST of CSPI04G22340 vs. NCBI nr
Match: gi|1012366229|gb|KYP77410.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 248.4 bits (633), Expect = 9.6e-63
Identity = 117/176 (66.48%), Postives = 141/176 (80.11%), Query Frame = 1 

Query: 1   MEFLAHQGTLIQRSCPHTSQQNRRVERKHRHILDSVRAQLLSAAYSEKFWGEAALTSVYI 60
           + FLA QGT  + SCP TSQQN R ERKHRHILDS+RA L+S++  E+ WGEAALT+VY+
Sbjct: 428 LHFLAEQGTTSEFSCPGTSQQNGRAERKHRHILDSIRAMLISSSCPERTWGEAALTAVYV 487

Query: 61  INCLSSKVTHNVSPFERLYGTSPSYFNLKIFGCACFVLLHPHEHTKLEPRACLCCFLGYG 120
           IN L S V  N +PFE L+GT PSY +L++FGCACFVLL PHE+TKL+PRA LCCFLGYG
Sbjct: 488 INRLPSSVLGNKTPFECLFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFLGYG 547

Query: 121 TEHKGFRCWDPISQ--RLSRHVTFWEHRLFSSLSSFHEFLSSPHPFFIDPSIDLFP 175
           TEHKG+R WDPISQ  R+SRHV FWEH++FSSLS+F    S+  P F +PSI+LFP
Sbjct: 548 TEHKGYRVWDPISQRIRISRHVVFWEHKMFSSLSTFKSIPSTSTPLFTNPSINLFP 603

[Close]
BLAST of CSPI04G22340 vs. NCBI nr
Match: gi|720024730|ref|XP_010263725.1| (PREDICTED: uncharacterized protein LOC104601921 [Nelumbo nucifera])

HSP 1 Score: 244.2 bits (622), Expect = 1.8e-61
Identity = 118/186 (63.44%), Postives = 143/186 (76.88%), Query Frame = 1 

Query: 1   MEFLAHQGTLIQRSCPHTSQQNRRVERKHRHILDSVRAQLLSAAYSEKFWGEAALTSVYI 60
           ++FL+  GT+I RSCP TSQQN RVERKH+HILD VRA L+S++  E+FWGE AL +VY 
Sbjct: 390 IQFLSQNGTIIHRSCPGTSQQNGRVERKHKHILDIVRALLISSSCPERFWGETALIAVYT 449

Query: 61  INCLSSKVTHNVSPFERLYGTSPSYFNLKIFGCACFVLLHPHEHTKLEPRACLCCFLGYG 120
           IN + S V  N+SP+ERLYG    Y +L +FGCACFVLL PHEHTK EP+A LCCFLGYG
Sbjct: 450 INRIPSPVIGNISPYERLYGHCLDYQSLHVFGCACFVLLQPHEHTKSEPKARLCCFLGYG 509

Query: 121 TEHKGFRCWDPISQ--RLSRHVTFWEHRLFSSLSSFHEFLSSPHPFFIDPSIDLFPTLDS 180
            EHKG+RCWDP+SQ  R+SRHVTFWEH++FSSLS F    +S H FF DP+I LFP  D 
Sbjct: 510 IEHKGYRCWDPLSQQLRISRHVTFWEHKIFSSLSPFRVTTTSSH-FFTDPTISLFPD-DL 569

Query: 181 PSDTTS 185
           P+  T+
Sbjct: 570 PAGPTT 573

The following BLAST results are available for this feature:
BLAST of CSPI04G22340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC5.9e-2032.63Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME7.0e-1329.41Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
BLAST of CSPI04G22340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151SM08_CAJCA7.9e-6467.05Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151UDP3_CAJCA6.7e-6366.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A5AQN8_VITVI2.3e-4755.49Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034560 PE=4 SV=1[more]
A5BVC1_VITVI3.0e-4756.07Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1[more]
A5BN86_VITVI6.7e-4756.42Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033646 PE=4 SV=1[more]
BLAST of CSPI04G22340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G22340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082601|ref|XP_008441928.1|6.0e-7377.14PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo][more]
gi|659120975|ref|XP_008460441.1|2.9e-6773.56PREDICTED: uncharacterized protein LOC103499253 [Cucumis melo][more]
gi|1012344626|gb|KYP55818.1|1.1e-6367.05Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012366229|gb|KYP77410.1|9.6e-6366.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|720024730|ref|XP_010263725.1|1.8e-6163.44PREDICTED: uncharacterized protein LOC104601921 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0032559 adenyl ribonucleotide binding
molecular_function GO:0043168 anion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0032550 purine ribonucleoside binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G22340.1CSPI04G22340.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 1..82
score: 8
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 2..84
score: 1.
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 2..90
score: 5.31
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..163
score: 9.1
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 2..163
score: 9.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G22340CsaV3_4G032690Cucumber (Chinese Long) v3cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G22340Silver-seed gourdcarcpiB0345
CSPI04G22340Silver-seed gourdcarcpiB0667
CSPI04G22340Cucumber (Chinese Long) v3cpicucB217
CSPI04G22340Watermelon (97103) v2cpiwmbB286
CSPI04G22340Wax gourdcpiwgoB421
CSPI04G22340Cucumber (Gy14) v1cgycpiB043
CSPI04G22340Cucurbita maxima (Rimu)cmacpiB024
CSPI04G22340Cucurbita maxima (Rimu)cmacpiB477
CSPI04G22340Cucurbita moschata (Rifu)cmocpiB015
CSPI04G22340Cucurbita moschata (Rifu)cmocpiB466
CSPI04G22340Cucumber (Chinese Long) v2cpicuB181
CSPI04G22340Melon (DHL92) v3.5.1cpimeB303
CSPI04G22340Watermelon (Charleston Gray)cpiwcgB289
CSPI04G22340Watermelon (97103) v1cpiwmB356
CSPI04G22340Cucurbita pepo (Zucchini)cpecpiB567
CSPI04G22340Cucurbita pepo (Zucchini)cpecpiB788
CSPI04G22340Bottle gourd (USVL1VR-Ls)cpilsiB283
CSPI04G22340Bottle gourd (USVL1VR-Ls)cpilsiB290
CSPI04G22340Melon (DHL92) v3.6.1cpimedB297
CSPI04G22340Cucumber (Gy14) v2cgybcpiB169