CSPI04G21840 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G21840
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrotransposon protein
LocationChr4 : 20334178 .. 20334645 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGGACTGTTACCGTGGATTAAGATAGAAGTAGAATTCTGTCGTTCGGTGGGGTTGGCCGAAATGATGAAATATGCATTGATGGTGGAAAATCGGGAAATTTTGAGGAGAGAGGCAAACCTTCCGGGGTACTCTATAGCCAAAATCACAAACTACCCCCACACTAATGCCAAAACGAATACGGTTAACAACGACCAAGCGAGTAAGGGAAACACTGTCTTTTCGATGAGGACGGTCACACTCAGAGGAGCTCTGGCGGCAGAGATTAAGAAAGAAGGGCCATCAAAAAGGTTATCCGACGTGGAGTTTCAGGCAAAAAGAGAAAAGAGACTCTGTTTCAAGTGTGATGAGAAATATTATTCAGGGCATAAGTGCAAAGCTAAGGAATTACATGAATTGCGAATGTTTGTAGTAAGGGCCGGTGACGTAGAGGAGGAAATCTTCGAGGAGGACGAGTATGAATAG

mRNA sequence

ATGGGGGGACTGTTACCGTGGATTAAGATAGAAGTAGAATTCTGTCGTTCGGTGGGGTTGGCCGAAATGATGAAATATGCATTGATGGTGGAAAATCGGGAAATTTTGAGGAGAGAGGCAAACCTTCCGGGGTACTCTATAGCCAAAATCACAAACTACCCCCACACTAATGCCAAAACGAATACGGTTAACAACGACCAAGCGAGTAAGGGAAACACTGTCTTTTCGATGAGGACGGTCACACTCAGAGGAGCTCTGGCGGCAGAGATTAAGAAAGAAGGGCCATCAAAAAGGTTATCCGACGTGGAGTTTCAGGCAAAAAGAGAAAAGAGACTCTGTTTCAAGTGTGATGAGAAATATTATTCAGGGCATAAGTGCAAAGCTAAGGAATTACATGAATTGCGAATGTTTGTAGTAAGGGCCGGTGACGTAGAGGAGGAAATCTTCGAGGAGGACGAGTATGAATAG

Coding sequence (CDS)

ATGGGGGGACTGTTACCGTGGATTAAGATAGAAGTAGAATTCTGTCGTTCGGTGGGGTTGGCCGAAATGATGAAATATGCATTGATGGTGGAAAATCGGGAAATTTTGAGGAGAGAGGCAAACCTTCCGGGGTACTCTATAGCCAAAATCACAAACTACCCCCACACTAATGCCAAAACGAATACGGTTAACAACGACCAAGCGAGTAAGGGAAACACTGTCTTTTCGATGAGGACGGTCACACTCAGAGGAGCTCTGGCGGCAGAGATTAAGAAAGAAGGGCCATCAAAAAGGTTATCCGACGTGGAGTTTCAGGCAAAAAGAGAAAAGAGACTCTGTTTCAAGTGTGATGAGAAATATTATTCAGGGCATAAGTGCAAAGCTAAGGAATTACATGAATTGCGAATGTTTGTAGTAAGGGCCGGTGACGTAGAGGAGGAAATCTTCGAGGAGGACGAGTATGAATAG
Homology
[Close]
BLAST of CSPI04G21840 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 1 

Query: 1    MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKT 60
            M GLLP I+ E    +  GL  +M+ A  VE+R +  R A  P        N P +    
Sbjct: 891  MNGLLPEIRAEQRLLQPYGLGHLMEMAQRVEDRNLAMRAAREP--------NGPKSTKML 950

Query: 61   NTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKY 120
            +T N  +   G   F  R V + G      ++E P KRL++ E QA+REK L FKC+EK+
Sbjct: 951  STANRGEWKIGEN-FQTRAVAV-GEKTMSQRREIPIKRLTESELQARREKGLWFKCEEKF 1010

Query: 121  YSGHKCKAKELHELRMFVVRAGDVEEE 148
              GH+CK     ELR+ +V   + E++
Sbjct: 1011 SPGHRCK----KELRVLLVHEDEEEDD 1023

[Close]
BLAST of CSPI04G21840 vs. TrEMBL
Match: A5BCT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003157 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.1e-09
Identity = 47/134 (35.07%), Postives = 68/134 (50.75%), Query Frame = 1 

Query: 14  FCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNT 73
           FC  +GL  +M+ A  VENR +    A  P          P +    ++ N      G  
Sbjct: 106 FCNHIGLGHLMEMAQRVENRNLTLWAAREP--------RDPKSTKMLSSANQGDWKIGEN 165

Query: 74  VFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKYYSGHKCKAKELHE 133
            F  R V +R  +  +  +E P KRL++ E QA+REK +CFKCDEK+  GH+CK     E
Sbjct: 166 -FQTRAVAIREKMMNQ-HREIPIKRLTESELQARREKGICFKCDEKFSLGHRCK----KE 225

Query: 134 LRMFVVRAGDVEEE 148
           LR+ +V   + EE+
Sbjct: 226 LRVLLVHEDEREED 225

[Close]
BLAST of CSPI04G21840 vs. TrEMBL
Match: W9R6D8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026170 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-06
Identity = 48/160 (30.00%), Postives = 79/160 (49.38%), Query Frame = 1 

Query: 4   LLPWIKIEVEFCRSVGLAEMMKYALMVENREIL----RREANLPGYSIAKITNYPHTNAK 63
           L P ++ E+   + + L  +M+ A  VE R ++    + +A+  G++  K      TN+ 
Sbjct: 109 LKPEVRAEIRLMKPIWLGRIMEVAQRVEERNLMVCGPKPKAHRSGFNETK-GGQTTTNSG 168

Query: 64  TNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEK 123
           +     +  ++   +   R    +   AA      P +R+ D E QAKREK LC++CD K
Sbjct: 169 SGLRFYEAPTEKGKILDKRKAINQDTGAA------PFRRMIDAELQAKREKGLCYRCDGK 228

Query: 124 YYSGHKCKAKELHELRMFVVR----AGDVEEEIFEEDEYE 156
           YY GH+C  +   EL++ +VR     G+VE E  E  E E
Sbjct: 229 YYVGHRCPNR---ELQVLIVREEEEQGEVEVEKIEAAEEE 258

[Close]
BLAST of CSPI04G21840 vs. TrEMBL
Match: A0A0V0IZ28_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-06
Identity = 51/164 (31.10%), Postives = 80/164 (48.78%), Query Frame = 1 

Query: 1   MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRR-------EANLPGYSIAKITNY 60
           + GL   I+ EV   ++  L E+M+ A  VE+R  + +       E+     S   +   
Sbjct: 69  LNGLKEEIRAEVMLLQAQTLREIMEMAQKVEDRNYVLQQVQGFKFESGRGSASNKPVGFR 128

Query: 61  PHTNAKTNTVNNDQASKG----NTVFSMRTVTLRGAL--AAEIKKEGPSKRLSDVEFQAK 120
           P+ +   N + +  +  G    NT   + T T   +    A  K EG  KRLSD EF  K
Sbjct: 129 PNYHRVANILESRDSRAGXASRNTDSPVHTATKSTSFNGTAVAKSEGQFKRLSDSEFARK 188

Query: 121 REKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEE 152
           RE  LCF+CDEK+   H+CK ++L+ L   +  A +++E+  EE
Sbjct: 189 RELGLCFRCDEKFGPNHRCKNRQLNLL--IISEAPNIDEDETEE 230

[Close]
BLAST of CSPI04G21840 vs. TrEMBL
Match: A5C0Y9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012977 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-06
Identity = 49/147 (33.33%), Postives = 74/147 (50.34%), Query Frame = 1 

Query: 1   MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKT 60
           M GLLP I+ ++   +  GL  +M+ A  V++R +  R A  P        +   T   +
Sbjct: 285 MNGLLPEIRAKL-LLQPYGLGHLMEMAQRVKDRNLTMRVAREP-------KDPKSTKMLS 344

Query: 61  NTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKY 120
           + +  D     N  F  R V +     ++ ++E P KRL++ E QA REK LCFKCDEK+
Sbjct: 345 SAIRGDWKIGKN--FQTRAVAVSEKTISQ-RREIPIKRLAESELQALREKGLCFKCDEKF 404

Query: 121 YSGHKCKAKELHELRMFVVRAGDVEEE 148
             GH  K     ELR+ +V   + EE+
Sbjct: 405 SPGHHYK----KELRVLLVHEDEEEED 416

[Close]
BLAST of CSPI04G21840 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 7.1e-35
Identity = 84/152 (55.26%), Postives = 105/152 (69.08%), Query Frame = 1 

Query: 1   MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKT 60
           M GLLPW++ EV FCR   LAEMM+ A MVENREI R EA + GYS  KIT Y +   KT
Sbjct: 245 MNGLLPWVRSEVFFCRPKSLAEMMEAAQMVENREIARIEAKMSGYSGGKITAYNNVAGKT 304

Query: 61  NTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKY 120
           +T      +K NTVF +RT+TLR ++  E ++EG  KRL D EFQA++EK LCF+C+EKY
Sbjct: 305 STGGVAGDNKNNTVFPIRTITLRSSVPNENQREGTYKRLPDAEFQARKEKGLCFRCNEKY 364

Query: 121 YSGHKCKAKELHELRMFVVRAGDVEEEIFEED 153
            + HKC+ +E  ELRMFVV A   E EI EE+
Sbjct: 365 SADHKCRLREQRELRMFVVTAERDEYEIVEEE 396

[Close]
BLAST of CSPI04G21840 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 6.0e-34
Identity = 83/155 (53.55%), Postives = 104/155 (67.10%), Query Frame = 1 

Query: 1   MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKT 60
           M GLLPW++ EV F R  GLAEMM+ A MVENREI+R EA L GYS  ++T    +N K 
Sbjct: 245 MNGLLPWVRSEVVFYRPKGLAEMMEVAQMVENREIVRTEAKLNGYSGGRMTGQIGSNRKA 304

Query: 61  NTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKY 120
            +      SK NT F +RT+TLR +   E ++EG  KRL D EFQA++EK LCF+C+EKY
Sbjct: 305 TSGGVAGESKSNTSFPIRTITLRSSAPTENRREGTYKRLPDAEFQARKEKGLCFRCNEKY 364

Query: 121 YSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE 156
            + HKC+ KE  ELRMFVV  G  E EI EE++ E
Sbjct: 365 SADHKCRLKEQRELRMFVVTEGREEYEIVEEEKEE 399

[Close]
BLAST of CSPI04G21840 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 3.3e-32
Identity = 79/153 (51.63%), Postives = 99/153 (64.71%), Query Frame = 1 

Query: 1   MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKT 60
           M GL PWI+ EV  CR  GLAEMM+ A +VE+RE+LR  ANL GY   K +    T  K 
Sbjct: 238 MSGLFPWIRAEVILCRPKGLAEMMRTAQLVEDREVLRNAANLNGYIGGKSSTPTSTGTKH 297

Query: 61  NTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKY 120
                ++ +K N  F +RT+TL+   + E +KEG SKRL D EFQ +REK LCFKC+EKY
Sbjct: 298 YYHQQNKENKANAPFPIRTITLKSPNSGETRKEGTSKRLPDAEFQLRREKGLCFKCNEKY 357

Query: 121 YSGHKCKAKELHELRMFVVRAGDVEEEIFEEDE 154
            + HKCK +E  ELRMFVV+  + E EI EE E
Sbjct: 358 SADHKCKMREQRELRMFVVKDNNEELEIVEETE 390

[Close]
BLAST of CSPI04G21840 vs. NCBI nr
Match: gi|659093726|ref|XP_008447685.1| (PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-11
Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = 1 

Query: 3   GLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNT 62
           GL P +++EV  C    L E M  A +V +R +  + A      I +      TN K   
Sbjct: 206 GLEPTLQVEVMSCHPQTLEECMMAAQLVNDRNLALKLAQAE-MGIMEPKRSEATNTKVPW 265

Query: 63  VNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKYYS 122
            NND+ S     F M+ +T+    +   K E P KRLSD EF+A+ +K LCF+C+EKY  
Sbjct: 266 -NNDKGSMRKNEFQMKQITIPLKRSYH-KGEPPVKRLSDAEFRARLDKGLCFRCNEKYSH 325

Query: 123 GHKCKAKELHELRMFVVRAGDVEEEIFEEDE 154
            H CK KE  +L +F++     EEE  EE E
Sbjct: 326 EHHCKIKEKRDLMLFILN----EEESTEEGE 349

[Close]
BLAST of CSPI04G21840 vs. NCBI nr
Match: gi|659093928|ref|XP_008447791.1| (PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 9.3e-11
Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = 1 

Query: 3   GLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNT 62
           GL P ++ EV       L E M  A +V +R +  + A+     I      P  N  T+T
Sbjct: 200 GLEPALQAEVMSRHPHTLEECMMAAQLVNDRNLALKLAHAEMGIIE-----PKRNEATST 259

Query: 63  V---NNDQASKGNTVFSMRTVT--LRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCD 122
               NND+ +     F M+ +T  L+G+     K E P KRLSD EF+A+ +K LCF+C+
Sbjct: 260 KVPWNNDKGNMRKNEFQMKQITIPLKGSYQ---KGEPPVKRLSDAEFRARLDKGLCFRCN 319

Query: 123 EKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDE 154
           EKY  GH+CK KE  EL +F++     EEE  EE E
Sbjct: 320 EKYSHGHRCKIKEKGELMLFILN----EEESTEEGE 343

The following BLAST results are available for this feature:
BLAST of CSPI04G21840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G21840 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B2I6_VITVI1.9e-1035.37Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1[more]
A5BCT4_VITVI6.1e-0935.07Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003157 PE=4 SV=1[more]
W9R6D8_9ROSA2.2e-0630.00Uncharacterized protein OS=Morus notabilis GN=L484_026170 PE=4 SV=1[more]
A0A0V0IZ28_SOLCH2.8e-0631.10Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
A5C0Y9_VITVI2.8e-0633.33Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012977 PE=4 SV=1[more]
BLAST of CSPI04G21840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G21840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109397|ref|XP_008454696.1|7.1e-3555.26PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo][more]
gi|659119521|ref|XP_008459701.1|6.0e-3453.55PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo][more]
gi|659134102|ref|XP_008467029.1|3.3e-3251.63PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo][more]
gi|659093726|ref|XP_008447685.1|7.1e-1137.09PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo][more]
gi|659093928|ref|XP_008447791.1|9.3e-1137.82PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0015074 DNA integration
biological_process GO:0043170 macromolecule metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G21840.1CSPI04G21840.1mRNA