CSPI04G21520 (gene) Wild cucumber (PI 183967)

NameCSPI04G21520
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionATP-dependent DNA helicase PIF1
LocationChr4 : 19996823 .. 19997344 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACATAAAGCTTGAAACAACGAGGCTTGATTTCTATAAAACACAACAATCACAAATTCGTTCGGAGTTGTATCAAGGGATCATTGATGTATTAAATGCAGGAGAAACGAGGGGAGACAAGGTTGGAAAACGTGTCGTTCTACCTTCAACTTTTATTGGTGGTCCTAGAGACATGCGGCGTCGATATTTAGATGCAATGACCTTAATACAACATTATGGGAAGCCAAATCTTTTCATAACAATGACTTGCAATTCTGAAGGGAAGGAAATAAGAGAAGAACTTATGGAAGGACAACAATCTCACGATAAACCAGATCTAACTTTAAGAGTATTTAGAGGAAAGTTAATGGACTTAAAAGACCAAATTATCCACAAGGAAATATTTGGAAAAGTTGCAGTGTTCGTATATGTGATTGAATTTCAAAAACGAGATCTTCCACACCTACACATGTTGGTAATATTGAAAAGAGATTTCAAGATTACTAATGCTGACCAATATGATAAATATGTTCGCGCGTAA

mRNA sequence

ATGTACATAAAGCTTGAAACAACGAGGCTTGATTTCTATAAAACACAACAATCACAAATTCGTTCGGAGTTGTATCAAGGGATCATTGATGTATTAAATGCAGGAGAAACGAGGGGAGACAAGGTTGGAAAACGTGTCGTTCTACCTTCAACTTTTATTGGTGGTCCTAGAGACATGCGGCGTCGATATTTAGATGCAATGACCTTAATACAACATTATGGGAAGCCAAATCTTTTCATAACAATGACTTGCAATTCTGAAGGGAAGGAAATAAGAGAAGAACTTATGGAAGGACAACAATCTCACGATAAACCAGATCTAACTTTAAGAGTATTTAGAGGAAAGTTAATGGACTTAAAAGACCAAATTATCCACAAGGAAATATTTGGAAAAGTTGCAGTGTTCGTATATGTGATTGAATTTCAAAAACGAGATCTTCCACACCTACACATGTTGGTAATATTGAAAAGAGATTTCAAGATTACTAATGCTGACCAATATGATAAATATGTTCGCGCGTAA

Coding sequence (CDS)

ATGTACATAAAGCTTGAAACAACGAGGCTTGATTTCTATAAAACACAACAATCACAAATTCGTTCGGAGTTGTATCAAGGGATCATTGATGTATTAAATGCAGGAGAAACGAGGGGAGACAAGGTTGGAAAACGTGTCGTTCTACCTTCAACTTTTATTGGTGGTCCTAGAGACATGCGGCGTCGATATTTAGATGCAATGACCTTAATACAACATTATGGGAAGCCAAATCTTTTCATAACAATGACTTGCAATTCTGAAGGGAAGGAAATAAGAGAAGAACTTATGGAAGGACAACAATCTCACGATAAACCAGATCTAACTTTAAGAGTATTTAGAGGAAAGTTAATGGACTTAAAAGACCAAATTATCCACAAGGAAATATTTGGAAAAGTTGCAGTGTTCGTATATGTGATTGAATTTCAAAAACGAGATCTTCCACACCTACACATGTTGGTAATATTGAAAAGAGATTTCAAGATTACTAATGCTGACCAATATGATAAATATGTTCGCGCGTAA
BLAST of CSPI04G21520 vs. TrEMBL
Match: K4CED9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-55
Identity = 100/173 (57.80%), Postives = 136/173 (78.61%), Query Frame = 1

Query: 1   MYIKLETTRLDFYKTQQSQIRSELYQGIIDVLNAGETRGDKVGKRVVLPSTFIGGPRDMR 60
           MYIKLETTRL++++ +QS  R E+YQGI+D +++GE  GD++G+R++LPS+FIGGPRDM+
Sbjct: 600 MYIKLETTRLEYFRKEQSNFRREVYQGIVDSVSSGECNGDRIGQRILLPSSFIGGPRDMK 659

Query: 61  RRYLDAMTLIQHYGKPNLFITMTCNSEGKEIREELMEGQQSHDKPDLTLRVFRGKLMDLK 120
           +RY+DAM L+QH+ +P+LFITMTCN +  EI++E   GQ   D+PDL  RVFR KL DLK
Sbjct: 660 KRYMDAMALVQHFDRPDLFITMTCNPDWIEIQQESRLGQTPQDRPDLVTRVFRAKLQDLK 719

Query: 121 DQIIHKEIFGKVAVFVYVIEFQKRDLPHLHMLVILKRDFKITNADQYDKYVRA 174
           +QI  KEIFG V   V+V+EFQKR LPH+H+L+ILK    I + DQYD+ + A
Sbjct: 720 EQIFKKEIFGIVVAHVFVVEFQKRGLPHVHILLILKEGHNIKSGDQYDRVISA 772

BLAST of CSPI04G21520 vs. TrEMBL
Match: K4AUW6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 97/173 (56.07%), Postives = 136/173 (78.61%), Query Frame = 1

Query: 1   MYIKLETTRLDFYKTQQSQIRSELYQGIIDVLNAGETRGDKVGKRVVLPSTFIGGPRDMR 60
           MYIKLETTRL++++ +QS  R E+YQGI+D +++GE RGD++G+R++LPS+FIGGPRDM+
Sbjct: 1   MYIKLETTRLEYFRKEQSNFRREVYQGIVDSVSSGECRGDRIGQRILLPSSFIGGPRDMK 60

Query: 61  RRYLDAMTLIQHYGKPNLFITMTCNSEGKEIREELMEGQQSHDKPDLTLRVFRGKLMDLK 120
           + Y+DAM L+QH+G+P+LF+TMTCN +  EI++EL  GQ   D+ DL  RVF+ KL DLK
Sbjct: 61  KHYMDAMALVQHFGRPDLFMTMTCNHDWIEIQQELRPGQTPQDRADLVTRVFKAKLQDLK 120

Query: 121 DQIIHKEIFGKVAVFVYVIEFQKRDLPHLHMLVILKRDFKITNADQYDKYVRA 174
           +QI  KEIFG V   V+V+EFQKR  PH+H+L+ LK    I + DQYD+++ A
Sbjct: 121 EQIFKKEIFGIVVAHVFVVEFQKRGQPHIHLLLKLKEGHNIKSGDQYDRFISA 173

BLAST of CSPI04G21520 vs. TrEMBL
Match: C5Y4I2_SORBI (Putative uncharacterized protein Sb05g002670 OS=Sorghum bicolor GN=Sb05g002670 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-53
Identity = 98/172 (56.98%), Postives = 131/172 (76.16%), Query Frame = 1

Query: 2   YIKLETTRLDFYKTQQSQIRSELYQGIIDVLNAGETRGDKVGKRVVLPSTFIGGPRDMRR 61
           YIK+E++RLD+ +  Q  IR+ LYQG++D L+AGE R + VGKR V+PS+FIGGPRDMRR
Sbjct: 223 YIKIESSRLDYIRNHQDDIRANLYQGLVDSLHAGEGRTEAVGKRTVMPSSFIGGPRDMRR 282

Query: 62  RYLDAMTLIQHYGKPNLFITMTCNSEGKEIREELMEGQQSHDKPDLTLRVFRGKLMDLKD 121
           RY+DAM L++ +GKP++F+TMTCN    EI+ EL  GQ   D+PDL +RVFR KL +LKD
Sbjct: 283 RYMDAMALVRRFGKPDIFLTMTCNPNWDEIKRELYPGQTPQDRPDLVVRVFRAKLQELKD 342

Query: 122 QIIHKEIFGKVAVFVYVIEFQKRDLPHLHMLVILKRDFKITNADQYDKYVRA 174
           +++ K I GKV   VYV+EFQKR LPH H L+I+ R +KIT  +QYD+ + A
Sbjct: 343 RLLKKNILGKVRAHVYVVEFQKRGLPHAHFLLIMDRKYKITCPEQYDRLISA 394

BLAST of CSPI04G21520 vs. TrEMBL
Match: C5YNB3_SORBI (Putative uncharacterized protein Sb07g024540 OS=Sorghum bicolor GN=Sb07g024540 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 96/170 (56.47%), Postives = 130/170 (76.47%), Query Frame = 1

Query: 2   YIKLETTRLDFYKTQQSQIRSELYQGIIDVLNAGETRGDKVGKRVVLPSTFIGGPRDMRR 61
           YIK+E++RLD+    Q  IR++LYQG++D L+AGE R + VGKR V+PS+FIGGPRDMRR
Sbjct: 214 YIKIESSRLDYIHNHQDDIRADLYQGLVDSLHAGEGRAEAVGKRTVMPSSFIGGPRDMRR 273

Query: 62  RYLDAMTLIQHYGKPNLFITMTCNSEGKEIREELMEGQQSHDKPDLTLRVFRGKLMDLKD 121
           RY+DAM L++ +GKP++F+TMTCN    EI+ EL   Q   D+PDL +RVFR KL +LKD
Sbjct: 274 RYMDAMALVRRFGKPDIFLTMTCNPNWDEIKRELYPVQMPQDRPDLVVRVFRAKLQELKD 333

Query: 122 QIIHKEIFGKVAVFVYVIEFQKRDLPHLHMLVILKRDFKITNADQYDKYV 172
           +++ K+I GKV   VYV+EFQKR LPH H L+I+ R +KIT  +QYD+ +
Sbjct: 334 RLLKKDILGKVRAHVYVVEFQKRGLPHAHFLLIMDRKYKITCPEQYDRLI 383

BLAST of CSPI04G21520 vs. TrEMBL
Match: C5XW19_SORBI (Putative uncharacterized protein Sb04g037770 OS=Sorghum bicolor GN=Sb04g037770 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.8e-52
Identity = 97/172 (56.40%), Postives = 132/172 (76.74%), Query Frame = 1

Query: 2   YIKLETTRLDFYKTQQSQIRSELYQGIIDVLNAGETRGDKVGKRVVLPSTFIGGPRDMRR 61
           YIK+E++RLD+ +  Q++IR++LYQG++D L+AGE R + VGKR V+PS+FIGGPRDMRR
Sbjct: 612 YIKIESSRLDYIRNHQTEIRADLYQGLVDSLHAGEGRSEAVGKRTVMPSSFIGGPRDMRR 671

Query: 62  RYLDAMTLIQHYGKPNLFITMTCNSEGKEIREELMEGQQSHDKPDLTLRVFRGKLMDLKD 121
           RY+DAM L++ +GKP++F+TMTCN +  EI  EL  GQ   D+PDL  RVFR KL +LK 
Sbjct: 672 RYMDAMALVRRFGKPDIFLTMTCNPKWDEITRELYPGQTPQDRPDLIDRVFRAKLEELKH 731

Query: 122 QIIHKEIFGKVAVFVYVIEFQKRDLPHLHMLVILKRDFKITNADQYDKYVRA 174
           +++ K+I GKV   VYV+EFQKR LPH H L+I+ R +KIT  +QYD  + A
Sbjct: 732 RLLKKDILGKVRAHVYVVEFQKRGLPHAHFLLIMDRRYKITCPEQYDLLISA 783

BLAST of CSPI04G21520 vs. NCBI nr
Match: gi|848933372|ref|XP_012829391.1| (PREDICTED: uncharacterized protein LOC105950571 [Erythranthe guttata])

HSP 1 Score: 250.0 bits (637), Expect = 3.1e-63
Identity = 117/173 (67.63%), Postives = 145/173 (83.82%), Query Frame = 1

Query: 1   MYIKLETTRLDFYKTQQSQIRSELYQGIIDVLNAGETRGDKVGKRVVLPSTFIGGPRDMR 60
           MYIKLETTRLD+Y+  QS +RSELYQGI++ +  GETRG +VGKRVVLP++FIGGPRDMR
Sbjct: 394 MYIKLETTRLDYYRQNQSNLRSELYQGIMNSVLKGETRGSEVGKRVVLPASFIGGPRDMR 453

Query: 61  RRYLDAMTLIQHYGKPNLFITMTCNSEGKEIREELMEGQQSHDKPDLTLRVFRGKLMDLK 120
           RRYLDA+ L+Q +GKP+LFITMTCN E KEI+E L +GQ++ D+PDLT RVFR KL DLK
Sbjct: 454 RRYLDALALVQRFGKPDLFITMTCNPEWKEIQENLYDGQKAQDRPDLTSRVFRAKLQDLK 513

Query: 121 DQIIHKEIFGKVAVFVYVIEFQKRDLPHLHMLVILKRDFKITNADQYDKYVRA 174
           DQ+  KEIFGKV   V+VIEFQKR LPH H+LVI+K ++KIT+ D +D++V A
Sbjct: 514 DQLFKKEIFGKVVAHVHVIEFQKRGLPHAHILVIMKSEYKITSPDNFDRFVSA 566

BLAST of CSPI04G21520 vs. NCBI nr
Match: gi|778730810|ref|XP_004139753.2| (PREDICTED: uncharacterized protein LOC101213993 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 4.4e-62
Identity = 118/132 (89.39%), Postives = 126/132 (95.45%), Query Frame = 1

Query: 1   MYIKLETTRLDFYKTQQSQIRSELYQGIIDVLNAGETRGDKVGKRVVLPSTFIGGPRDMR 60
           MYIKLETTRLDFYKTQQSQIRSELYQGI+DV+NAGETRGDKVGKRVVLPSTFIGGP++MR
Sbjct: 1   MYIKLETTRLDFYKTQQSQIRSELYQGIVDVVNAGETRGDKVGKRVVLPSTFIGGPKNMR 60

Query: 61  RRYLDAMTLIQHYGKPNLFITMTCNSEGKEIREELMEGQQSHDKPDLTLRVFRGKLMDLK 120
            RYLDAM L+QHYGKP+LFITMTCNSE KEIREELMEGQQSHD+PDLT RV RGKLMDLK
Sbjct: 61  HRYLDAMALVQHYGKPDLFITMTCNSEWKEIREELMEGQQSHDRPDLTSRVSRGKLMDLK 120

Query: 121 DQIIHKEIFGKV 133
           DQI+HKEIFG V
Sbjct: 121 DQIVHKEIFGNV 132

BLAST of CSPI04G21520 vs. NCBI nr
Match: gi|848920066|ref|XP_012856992.1| (PREDICTED: uncharacterized protein LOC105976260 [Erythranthe guttata])

HSP 1 Score: 245.4 bits (625), Expect = 7.6e-62
Identity = 114/173 (65.90%), Postives = 144/173 (83.24%), Query Frame = 1

Query: 1   MYIKLETTRLDFYKTQQSQIRSELYQGIIDVLNAGETRGDKVGKRVVLPSTFIGGPRDMR 60
           MYIKLETTRLD+++  Q+ +R+ELYQG+ID ++ GE RG +VGKR+VLP++FIGGPRDMR
Sbjct: 319 MYIKLETTRLDYFRRNQTNLRAELYQGLIDSVSRGEKRGGEVGKRIVLPASFIGGPRDMR 378

Query: 61  RRYLDAMTLIQHYGKPNLFITMTCNSEGKEIREELMEGQQSHDKPDLTLRVFRGKLMDLK 120
           R YLDA+ L+Q +GKP+LFITMTCN E KEI+E L  GQQ+ D+PDLT +VFR KL DLK
Sbjct: 379 RIYLDALALVQRFGKPDLFITMTCNPEWKEIQENLYAGQQAQDRPDLTSQVFRAKLQDLK 438

Query: 121 DQIIHKEIFGKVAVFVYVIEFQKRDLPHLHMLVILKRDFKITNADQYDKYVRA 174
           DQ+  KEIFGKVA  V+VIEFQKR LPH HML+ILK ++KIT  +Q+D++V A
Sbjct: 439 DQLFKKEIFGKVAAHVHVIEFQKRGLPHAHMLIILKSEYKITTPEQFDRFVCA 491

BLAST of CSPI04G21520 vs. NCBI nr
Match: gi|848874370|ref|XP_012837726.1| (PREDICTED: uncharacterized protein LOC105958267 [Erythranthe guttata])

HSP 1 Score: 244.2 bits (622), Expect = 1.7e-61
Identity = 113/173 (65.32%), Postives = 144/173 (83.24%), Query Frame = 1

Query: 1   MYIKLETTRLDFYKTQQSQIRSELYQGIIDVLNAGETRGDKVGKRVVLPSTFIGGPRDMR 60
           MYIKLETTRLD+ +  Q+ +R+ELYQGI+D ++ GE+RG +VGKR+VLP +FIGGPRDMR
Sbjct: 57  MYIKLETTRLDYCQRNQANLRAELYQGIVDSVSKGESRGSEVGKRIVLPPSFIGGPRDMR 116

Query: 61  RRYLDAMTLIQHYGKPNLFITMTCNSEGKEIREELMEGQQSHDKPDLTLRVFRGKLMDLK 120
           RRYLDA+ L+Q +GKP+LFITMTCN +  EI+E+L  GQ++ D+PDLT RVFR KL DLK
Sbjct: 117 RRYLDALALVQKFGKPDLFITMTCNPDWSEIKEKLYVGQRAQDRPDLTARVFRAKLQDLK 176

Query: 121 DQIIHKEIFGKVAVFVYVIEFQKRDLPHLHMLVILKRDFKITNADQYDKYVRA 174
           DQ+  KEIFGKVA  V+VIEFQKR LPH HML+ILK ++KIT  +Q+D++V A
Sbjct: 177 DQLFKKEIFGKVAAHVHVIEFQKRGLPHAHMLIILKSEYKITTPEQFDRFVCA 229

BLAST of CSPI04G21520 vs. NCBI nr
Match: gi|848881324|ref|XP_012841028.1| (PREDICTED: uncharacterized protein LOC105961341 [Erythranthe guttata])

HSP 1 Score: 242.3 bits (617), Expect = 6.4e-61
Identity = 114/173 (65.90%), Postives = 139/173 (80.35%), Query Frame = 1

Query: 1   MYIKLETTRLDFYKTQQSQIRSELYQGIIDVLNAGETRGDKVGKRVVLPSTFIGGPRDMR 60
           MYIKLETTRLD+ +  QS +RSELYQGI+  +  GETRG++VGKR++LP +FIGGPRDMR
Sbjct: 472 MYIKLETTRLDYCRHNQSNLRSELYQGIMKSVQQGETRGNEVGKRIILPPSFIGGPRDMR 531

Query: 61  RRYLDAMTLIQHYGKPNLFITMTCNSEGKEIREELMEGQQSHDKPDLTLRVFRGKLMDLK 120
           RRYLDA+ L+Q +GKP+ FITMTCN E  EI+E L  GQ++ D+PDLT RVFR KL DLK
Sbjct: 532 RRYLDALALVQRFGKPDFFITMTCNPEWAEIQENLYPGQKAQDRPDLTSRVFRAKLQDLK 591

Query: 121 DQIIHKEIFGKVAVFVYVIEFQKRDLPHLHMLVILKRDFKITNADQYDKYVRA 174
           DQ+  KEI GKVA  V+VIEFQKR LPH HML+ILK ++KIT  D YD++V A
Sbjct: 592 DQLFKKEILGKVAAHVHVIEFQKRGLPHAHMLIILKSEYKITTPDTYDRFVSA 644

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
K4CED9_SOLLC2.1e-5557.80Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
K4AUW6_SOLLC1.1e-5456.07Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
C5Y4I2_SORBI1.2e-5356.98Putative uncharacterized protein Sb05g002670 OS=Sorghum bicolor GN=Sb05g002670 P... [more]
C5YNB3_SORBI1.3e-5256.47Putative uncharacterized protein Sb07g024540 OS=Sorghum bicolor GN=Sb07g024540 P... [more]
C5XW19_SORBI3.8e-5256.40Putative uncharacterized protein Sb04g037770 OS=Sorghum bicolor GN=Sb04g037770 P... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|848933372|ref|XP_012829391.1|3.1e-6367.63PREDICTED: uncharacterized protein LOC105950571 [Erythranthe guttata][more]
gi|778730810|ref|XP_004139753.2|4.4e-6289.39PREDICTED: uncharacterized protein LOC101213993 [Cucumis sativus][more]
gi|848920066|ref|XP_012856992.1|7.6e-6265.90PREDICTED: uncharacterized protein LOC105976260 [Erythranthe guttata][more]
gi|848874370|ref|XP_012837726.1|1.7e-6165.32PREDICTED: uncharacterized protein LOC105958267 [Erythranthe guttata][more]
gi|848881324|ref|XP_012841028.1|6.4e-6165.90PREDICTED: uncharacterized protein LOC105961341 [Erythranthe guttata][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025476Helitron helicase-like domain
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051276 chromosome organization
biological_process GO:0006259 DNA metabolic process
biological_process GO:0044763 single-organism cellular process
biological_process GO:0044710 single-organism metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G21520.1CSPI04G21520.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025476Helitron helicase-like domainPFAMPF14214Helitron_like_Ncoord: 1..153
score: 6.8
NoneNo IPR availablePANTHERPTHR10492UNCHARACTERIZEDcoord: 1..173
score: 3.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None