CSPI04G21460 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G21460
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 19941090 .. 19942251 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGCAGACACTTGTTTGGTTGCCAAGAAACAAAGCAGCCAACCCAAAAGAAAAATACACAAAAATTTCAGGTGGGTCAACCGGAAAACAATTGTATTTGGAACCCATTTCCAGTTTCGACGACTTTCCGAGGAATTTGGAAGTTCTCAGGTCAGTCTAGCACCTCAATATTTCTGTACCTAATTTTTCATGTGGGTCTGGAAGAAGGAGATGTTTTCCTGTTTTTTTTTTTTCTCTAACCCCCATTTGATTATGATTTCTAGAAAATGGAACAGCCTAGTATTTTAGAAGGTTGCATCAAATTTGTTCCTTATAACTGCTGATTATTAGTTGTAAATCCTCAATAATATGTTTCTGCTGTTTATTTGATTGATAATACAAAGGATCAAGCCTTACCATTCTATGAACCCTATTAAATTTATGTATTTGAGGGAACAGAAACCATGACTTGTGGATGGAATTGGTTGTATCTTAATGTAACCTAACAATCTTTGGATTTTCAATAACTTTGCCACCAACCCTTTTATTTCTCTGTAAACTATTGAACCTGTCAACTAACCCGTATGGATGTATGATTATGAAGATTGTGCTCTGAGATCGAGGTTATGGAATTTGGACCAGGCCATGAGATCCGTTCTAGGACCAATTGGACCAGGATTCACCAATCTTGGGTGCTGTGGGACTCCATGGTTAGATATCATTACTTCCCCTGTGTTCTGAGATGATATTATTTTATTGATTCTTTGATATTTTCCTTGTTTCTGCTGTATCTTATGAACACATGTCAAAATGTTTTGGTAATCAAAAAATAATAAAACAACAATGGTTCTCTTTAGTCATAGCTCACAGTCATTTCAAGTTCTTTACCATATTTCTATGCTTTTACTTTTCTCCTCCTCCTCCTACCTATCTACCCTTTGGTTCTTTTTTTACATAATCATAACTTGGAGTAAACCTTGCCTTTTTCATAAAGGAAAAACCAATGGATTTCTTCTTTTCTCCTATATTTAAAAGAAACTTCTTGTATTCTGTCTCATCTCCAGGAGCCACCTCCTTCTCAGCCTGCTATAACCTGTGAAACTTGTTAGCTTCTGAAAGAAAGGCCCACCTTTTTCCTTTCTTCTTATTGCTATTTAAGGTTTGAAAAACTGTTCCCC

mRNA sequence

ATGGAGAAGCAGACACTTGTTTGGTTGCCAAGAAACAAAGCAGCCAACCCAAAAGAAAAATACACAAAAATTTCAGGTGGGTCAACCGGAAAACAATTGTATTTGGAACCCATTTCCAGTTTCGACGACTTTCCGAGGAATTTGGAAGTTCTCAGATTGTGCTCTGAGATCGAGGTTATGGAATTTGGACCAGGCCATGAGATCCGTTCTAGGACCAATTGGACCAGGATTCACCAATCTTGGGTGCTGTGGGACTCCATGGAGCCACCTCCTTCTCAGCCTGCTATAACCTGTGAAACTTGTTAG

Coding sequence (CDS)

ATGGAGAAGCAGACACTTGTTTGGTTGCCAAGAAACAAAGCAGCCAACCCAAAAGAAAAATACACAAAAATTTCAGGTGGGTCAACCGGAAAACAATTGTATTTGGAACCCATTTCCAGTTTCGACGACTTTCCGAGGAATTTGGAAGTTCTCAGATTGTGCTCTGAGATCGAGGTTATGGAATTTGGACCAGGCCATGAGATCCGTTCTAGGACCAATTGGACCAGGATTCACCAATCTTGGGTGCTGTGGGACTCCATGGAGCCACCTCCTTCTCAGCCTGCTATAACCTGTGAAACTTGTTAG
Homology
[Close]
BLAST of CSPI04G21460 vs. TrEMBL
Match: A0A0A0KZ13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G598020 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.0e-45
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM 60
          MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM
Sbjct: 1  MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM 60

Query: 61 EFGPGHEIRSRTNWTRIHQSWVLWDSME 89
          EFGPGHEIRSRTNWTRIHQSWVLWDSM+
Sbjct: 61 EFGPGHEIRSRTNWTRIHQSWVLWDSMD 88

[Close]
BLAST of CSPI04G21460 vs. NCBI nr
Match: gi|700199762|gb|KGN54920.1| (hypothetical protein Csa_4G598020 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 2.9e-45
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM 60
          MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM
Sbjct: 1  MEKQTLVWLPRNKAANPKEKYTKISGGSTGKQLYLEPISSFDDFPRNLEVLRLCSEIEVM 60

Query: 61 EFGPGHEIRSRTNWTRIHQSWVLWDSME 89
          EFGPGHEIRSRTNWTRIHQSWVLWDSM+
Sbjct: 61 EFGPGHEIRSRTNWTRIHQSWVLWDSMD 88

The following BLAST results are available for this feature:
BLAST of CSPI04G21460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G21460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ13_CUCSA2.0e-4598.86Uncharacterized protein OS=Cucumis sativus GN=Csa_4G598020 PE=4 SV=1[more]
BLAST of CSPI04G21460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G21460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199762|gb|KGN54920.1|2.9e-4598.86hypothetical protein Csa_4G598020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G21460.1CSPI04G21460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G21460Csa4G598020Cucumber (Chinese Long) v2cpicuB181
CSPI04G21460CsaV3_4G031790Cucumber (Chinese Long) v3cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G21460Cucumber (Gy14) v2cgybcpiB169
CSPI04G21460Cucumber (Gy14) v1cgycpiB043
CSPI04G21460Cucurbita maxima (Rimu)cmacpiB469
CSPI04G21460Cucurbita moschata (Rifu)cmocpiB459