CSPI04G21440 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G21440
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTransposon protein, putative, CACTA, En/Spm sub-class
LocationChr4 : 19935310 .. 19936111 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGCTACCAACATCCCTAGTTCATTCTATGAAGCCAAACACAAATTACGTGATTTGGGTCTCGGGTACGAGACTATTCATGCTTGTAACTATGACTGTGTATTGTTCTGGAAGAAGTTTGAGGAGTTGCAACAATGTCCTACTTGTGGTGAGCCTCGATACAAGATTAATTTCAATAAATCAGAAAAGAAAATTCCATAAAAAAATATGGCGTTACTTTCTGGTGGTGCCAAGATTACAACGATTGTTTGTATGGCAAGAAAGTTCGACAGACATGTGATGACATAAGAATAAACGAGTGGAAACAGAGGATGTGTTGAGACATCCAATCGGTATAGAGGGATGAAAGTACTTTGATTCTGAATTTTTTTATTTTGCTTTAGAGCCACGAAATGTTTATTTGGAGTTAGCTTCATATGGATTGAATATATCCAATCATATAAGTACCTCGTACAGTATGTGGCCTGTGGTGTTAATTCCGTATAATTTTTCACCATGGAAATATATGAAAGAATCAAACTTCTTCATGTCATTTCTCATTCCCAGTCCAAAATCTTCTTGCAGAAAAAATGATGTGAACCAACAACCATTACTTGAGGAACTAAACAATCTATGGACGTTTGGTGTGCATACATATGATTGTCTAACATATCAATGTTTTCAGTTGTATGCAATCTTGTTGTGGATAATTAATGATTTTTCGGCATATGGTGATTTGTTCGATTGGAGTACAAAGGGCATTAGGCATGTCCCATTTGCATGGGGGATAAATCATCGTTTGGGATACGTGAAGAAATAG

mRNA sequence

ATGTGTGCTACCAACATCCCTAGTTCATTCTATGAAGCCAAACACAAATTACGTGATTTGGGTCTCGGGTACGAGACTATTCATGCTTGTAACTATGACTGTGTATTGTTCTGGAAGAAGTTTGAGGAGTTGCAACAATGTCCTACTTGTGAGCCACGAAATGTTTATTTGGAGTTAGCTTCATATGGATTGAATATATCCAATCATATAAGTACCTCGTACAGTATGTGGCCTGTGGTGTTAATTCCGTATAATTTTTCACCATGGAAATATATGAAAGAATCAAACTTCTTCATGTCATTTCTCATTCCCAGTCCAAAATCTTCTTGCAGAAAAAATGATGTGAACCAACAACCATTACTTGAGGAACTAAACAATCTATGGACGTTTGGTGTGCATACATATGATTGTCTAACATATCAATGTTTTCAGTTGTATGCAATCTTGTTGTGGATAATTAATGATTTTTCGGCATATGGTGATTTGTTCGATTGGAGTACAAAGGGCATTAGGCATGTCCCATTTGCATGGGGGATAAATCATCGTTTGGGATACGTGAAGAAATAG

Coding sequence (CDS)

ATGTGTGCTACCAACATCCCTAGTTCATTCTATGAAGCCAAACACAAATTACGTGATTTGGGTCTCGGGTACGAGACTATTCATGCTTGTAACTATGACTGTGTATTGTTCTGGAAGAAGTTTGAGGAGTTGCAACAATGTCCTACTTGTGAGCCACGAAATGTTTATTTGGAGTTAGCTTCATATGGATTGAATATATCCAATCATATAAGTACCTCGTACAGTATGTGGCCTGTGGTGTTAATTCCGTATAATTTTTCACCATGGAAATATATGAAAGAATCAAACTTCTTCATGTCATTTCTCATTCCCAGTCCAAAATCTTCTTGCAGAAAAAATGATGTGAACCAACAACCATTACTTGAGGAACTAAACAATCTATGGACGTTTGGTGTGCATACATATGATTGTCTAACATATCAATGTTTTCAGTTGTATGCAATCTTGTTGTGGATAATTAATGATTTTTCGGCATATGGTGATTTGTTCGATTGGAGTACAAAGGGCATTAGGCATGTCCCATTTGCATGGGGGATAAATCATCGTTTGGGATACGTGAAGAAATAG
Homology
[Close]
BLAST of CSPI04G21440 vs. TrEMBL
Match: A5ASG5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013246 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.7e-32
Identity = 71/134 (52.99%), Postives = 86/134 (64.18%), Query Frame = 1 

Query: 36  LFWKKFEELQQCPTCEPRNVYLELASYGLNISNHISTSYSMWPVVLIPYNFSPWKYMKES 95
           L WK F+ +      EPRNV L LAS G N   ++S SYSMWPVVLIPYN  PW  MK++
Sbjct: 212 LAWKNFDNVHPSFALEPRNVRLGLASDGFNPFGNMSISYSMWPVVLIPYNLPPWMCMKQT 271

Query: 96  NFFMSFLIPSPKSSCRKNDVNQQPLLEELNNLWTFGVHTYDCLTYQCFQLYAILLWIIND 155
            F +S LIP P +     D+  QPL++ELN+LW  GV TYD  T Q F + A +LW IND
Sbjct: 272 FFMLSLLIPGPTAPGNDIDIYLQPLIDELNDLWDVGVETYDASTKQNFCMRAAILWTIND 331

Query: 156 FSAYGDLFDWSTKG 170
           F AY +L  WSTKG
Sbjct: 332 FPAYANLSGWSTKG 345

[Close]
BLAST of CSPI04G21440 vs. TrEMBL
Match: A0A0V0H396_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.1e-31
Identity = 72/134 (53.73%), Postives = 84/134 (62.69%), Query Frame = 1 

Query: 36  LFWKKFEELQQCPTCEPRNVYLELASYGLNISNHISTSYSMWPVVLIPYNFSPWKYMKES 95
           L WK F+E       +PR+V L LAS G N    +S SYSMWPV+LIPYN  PW  MK+S
Sbjct: 29  LEWKSFDEKYLNFASDPRSVRLGLASDGFNPFGSMSNSYSMWPVILIPYNLPPWLCMKQS 88

Query: 96  NFFMSFLIPSPKSSCRKNDVNQQPLLEELNNLWTFGVHTYDCLTYQCFQLYAILLWIIND 155
           N  +S LIP PK      DV  QPL+++L  LW  G+ TYD    Q FQL+A LLW IND
Sbjct: 89  NLLLSLLIPGPKGPGMDIDVYLQPLIDDLKILWGDGIETYDAFMKQNFQLHASLLWTIND 148

Query: 156 FSAYGDLFDWSTKG 170
           F AYG L  WSTKG
Sbjct: 149 FPAYGILSGWSTKG 162

[Close]
BLAST of CSPI04G21440 vs. TrEMBL
Match: Q9LJS5_ARATH (TNP2-like transposon protein-like OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-30
Identity = 71/167 (42.51%), Postives = 93/167 (55.69%), Query Frame = 1 

Query: 8   SSFYEAKHKLRDLGLGYETIHACNYDCVLFWKKFEELQQCPTCEPRNVYL-----ELASY 67
           +S YE K  L+   +GYE IHAC  DC LF  +FE+L  CP C      +     E+   
Sbjct: 167 TSLYEVKKFLQTFDMGYEKIHACVNDCCLFRNQFEKLDSCPKCNSSRWKINTRTGEVKKD 226

Query: 68  GLNISNHISTSYSMWPVVLIPYNFSPWKYMKESNFFMSFLIPSPKSSCRKNDVNQQPLLE 127
           G N  N  + +YS WPV+L+ YN  P K MKE N  ++ LIP P       DV  +PL++
Sbjct: 227 GFNPFNMKNVNYSAWPVLLVNYNMPPDKCMKEENIMLTLLIPGPTQPGNNIDVYLEPLID 286

Query: 128 ELNNLWTFGVHTYDCLTYQCFQLYAILLWIINDFSAYGDLFDWSTKG 170
           +LN+LW  G  TYD  ++  F L A+LLW I DF AYG+L     KG
Sbjct: 287 DLNHLWEKGELTYDAFSHTTFTLKAMLLWTIQDFPAYGNLAGCKVKG 333

[Close]
BLAST of CSPI04G21440 vs. TrEMBL
Match: A5AEV7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018031 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-30
Identity = 67/137 (48.91%), Postives = 87/137 (63.50%), Query Frame = 1 

Query: 38  WKKFEELQQCPTCEPRNVYLELASYGLNISNHISTSYSMWPVVLIPYNFSPWKYMKESNF 97
           WK F+        + RNV L LA+ G N    +S +YSMWPVVL+PYN  PWK MKES F
Sbjct: 300 WKDFDNQYPWFAQDARNVRLGLATDGFNPFGTMSNNYSMWPVVLVPYNMPPWKCMKESFF 359

Query: 98  FMSFLIPSPKSSCRKNDVNQQPLLEELNNLWTFGVHTYDCLTYQCFQLYAILLWIINDFS 157
            MS LIP P +  +  D+  +PL++EL  LW  GVHT+D  +   F+++A LLW I+DF 
Sbjct: 360 MMSLLIPGPHAPGKDIDIYLRPLVDELKELWHDGVHTFDMSSGDYFRMHACLLWTIHDFP 419

Query: 158 AYGDLFDWSTKGIRHVP 175
           AYG+L  WSTKG +  P
Sbjct: 420 AYGNLSGWSTKGYKACP 436

[Close]
BLAST of CSPI04G21440 vs. TrEMBL
Match: U5CUH5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s05566p00003390 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-29
Identity = 67/156 (42.95%), Postives = 89/156 (57.05%), Query Frame = 1 

Query: 38  WKKFEELQQCPTCEPRNVYLELASYGLNISNHISTSYSMWPVVLIPYNFSPWKYMKESNF 97
           WK+F+ L      EPRNV L LA+ G N   ++S SYS+WPV+ +PYN  PWK M   + 
Sbjct: 125 WKQFDRLHPSFAVEPRNVRLGLATDGFNPFGNMSNSYSLWPVICVPYNLPPWKCMSSESL 184

Query: 98  FMSFLIPSPKSSCRKNDVNQQPLLEELNNLWTFGVHTYDCLTYQCFQLYAILLWIINDFS 157
            ++ LIP P S  +  DV  +PL++EL  LW  GV T D      F + A +LW INDF 
Sbjct: 185 LLTLLIPGPSSPGKDIDVFMRPLIDELKQLWETGVETRDAYNGTVFSMRAAVLWTINDFP 244

Query: 158 AYGDLFDWSTKGI-------RHVPFAWGINHRLGYV 187
           AY  +  WSTKG         H P + G+N ++GYV
Sbjct: 245 AYALMSGWSTKGYMACPTCNEHTP-SIGLNSKIGYV 279

[Close]
BLAST of CSPI04G21440 vs. NCBI nr
Match: gi|659086523|ref|XP_008443978.1| (PREDICTED: uncharacterized protein LOC103487435 [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 1.3e-38
Identity = 83/137 (60.58%), Postives = 93/137 (67.88%), Query Frame = 1 

Query: 38  WKKFEELQQCPTCEPRNVYLELASYGLNISNHISTSYSMWPVVLIPYNFSPWKYMKESNF 97
           WK F+        + RNV L LAS G N   ++STSYSMWPVV+IPYN  PWK MKESNF
Sbjct: 24  WKHFDREFPEFASDSRNVRLGLASGGFNPFGNMSTSYSMWPVVIIPYNLPPWKCMKESNF 83

Query: 98  FMSFLIPSPKSSCRKNDVNQQPLLEELNNLWTFGVHTYDCLTYQCFQLYAILLWIINDFS 157
           FMS LIP P+S  ++ DV  QPL+EEL  LWT GV TYD LT + FQLYA LLW  NDF 
Sbjct: 84  FMSLLIPGPRSPGKEIDVYLQPLIEELKQLWTIGVRTYDSLTGEFFQLYATLLWTFNDFP 143

Query: 158 AYGDLFDWSTKGIRHVP 175
           AYGDL  WS KG R  P
Sbjct: 144 AYGDLSGWSIKGYRACP 160

[Close]
BLAST of CSPI04G21440 vs. NCBI nr
Match: gi|659126160|ref|XP_008463041.1| (PREDICTED: uncharacterized protein LOC103501282 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34
Identity = 75/137 (54.74%), Postives = 90/137 (65.69%), Query Frame = 1 

Query: 33  DCVLFWKKFEELQQCPTCEPRNVYLELASYGLNISNHISTSYSMWPVVLIPYNFSPWKYM 92
           D V  WK F+E   C     RNV L L+S G N   ++STSYSMWPV+LIPYN  PWK M
Sbjct: 195 DDVEGWKHFDEQYPCFASYARNVRLALSSDGFNPFGNVSTSYSMWPVILIPYNLPPWKCM 254

Query: 93  KESNFFMSFLIPSPKSSCRKNDVNQQPLLEELNNLWTFGVHTYDCLTYQCFQLYAILLWI 152
           K    F+S LIP P+S  ++ D+  QPL++ELN LW  G+ TYD  +   FQL A+LLW 
Sbjct: 255 KAPFTFLSLLIPGPRSLGKEIDIYLQPLIDELNELWVNGIQTYDSFSASFFQLRAVLLWT 314

Query: 153 INDFSAYGDLFDWSTKG 170
           INDFSAYGDL  W TKG
Sbjct: 315 INDFSAYGDLSGWRTKG 331

[Close]
BLAST of CSPI04G21440 vs. NCBI nr
Match: gi|731379130|ref|XP_010668374.1| (PREDICTED: uncharacterized protein LOC104885382 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 152.9 bits (385), Expect = 5.5e-34
Identity = 76/187 (40.64%), Postives = 99/187 (52.94%), Query Frame = 1 

Query: 5   NIPSSFYEAKHKLRDLGLGYETIHACNYDCVLFWKKFEELQQCPTC-------------- 64
           ++PS++YEA+  + DLG  YE I AC +DC+LFWK+  +L++C  C              
Sbjct: 200 DVPSNYYEARKMITDLGFHYEKIEACEHDCMLFWKENVDLEKCSICGTNRNRSCPKVLRC 259

Query: 65  ---EPRNVYLELASYGLNISNHISTSYSMWPVVLIPYNFSPWKYMKESNFFMSFLIPSPK 124
              +PR   L LAS G N    + + YS+WPV L+ YN  PW  MK+S   +S LIP   
Sbjct: 260 FPLKPRLQRLGLASDGFNPFGGLRSDYSIWPVFLVVYNLPPWMCMKQSYNILSLLIPEKS 319

Query: 125 SSCRKNDVNQQPLLEELNNLWTFGVHTYDCLTYQCFQLYAILLWIINDFSAYGDLFDWST 175
                 DV  QP +EEL  LW  G  TYD      F +   LLW INDF AY +L  WST
Sbjct: 320 GPDNNIDVYLQPSIEELKELWEMGAMTYDASQNSYFHMLVALLWTINDFPAYANLSGWST 379

[Close]
BLAST of CSPI04G21440 vs. NCBI nr
Match: gi|659121346|ref|XP_008460612.1| (PREDICTED: uncharacterized protein LOC103499390 [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 71/137 (51.82%), Postives = 87/137 (63.50%), Query Frame = 1 

Query: 38  WKKFEELQQCPTCEPRNVYLELASYGLNISNHISTSYSMWPVVLIPYNFSPWKYMKESNF 97
           WK F+E   C   + RNV L L+S G N   ++STSY+MWPV+LIPYN  PWK MK    
Sbjct: 290 WKHFDEQYPCFASDARNVRLALSSDGFNPFGNMSTSYNMWPVILIPYNLPPWKCMKAPFT 349

Query: 98  FMSFLIPSPKSSCRKNDVNQQPLLEELNNLWTFGVHTYDCLTYQCFQLYAILLWIINDFS 157
           F+S LIP P+S  ++ D+  QPL++ELN LW  G+ TYD      FQL A LLW INDF 
Sbjct: 350 FLSLLIPGPRSLDKEIDIYLQPLIDELNELWVDGIQTYDSFNASFFQLRAALLWTINDFP 409

Query: 158 AYGDLFDWSTKGIRHVP 175
            YGDL  W TKG +  P
Sbjct: 410 GYGDLSGWRTKGYKACP 426

[Close]
BLAST of CSPI04G21440 vs. NCBI nr
Match: gi|697184124|ref|XP_009601086.1| (PREDICTED: uncharacterized protein LOC104096432 [Nicotiana tomentosiformis])

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 77/166 (46.39%), Postives = 98/166 (59.04%), Query Frame = 1 

Query: 4   TNIPSSFYEAKHKLRDLGLGYETIHACNYDCVLFWKKFEELQQCPTCEPRNVYLELASYG 63
           +N+ +S+YEAK  + DLGL Y  I AC  DC+L+ K  E L+ C  C       +   +G
Sbjct: 174 SNLNASYYEAKKIIWDLGLSYMRIDACKNDCMLYRKDDELLEFCKVCGASRWKED--KHG 233

Query: 64  LNISNHISTSYSMWPVVLIPYNFSPWKYMKESNFFMSFLIPSPKSSCRKNDVNQQPLLEE 123
                +  T YS+WPVVLIPYN  PW  MK+ NF +S LIP P+S     DV  QPL+EE
Sbjct: 234 FQPFGNSKTPYSIWPVVLIPYNLPPWLCMKKENFILSMLIPGPESPGDAIDVYLQPLIEE 293

Query: 124 LNNLWTFGVHTYDCLTYQCFQLYAILLWIINDFSAYGDLFDWSTKG 170
           L  LW  GV ++D    +   L+A LLW INDF AY +L  WSTKG
Sbjct: 294 LKELWETGVESFDAPARKNSMLHAALLWTINDFPAYANLSGWSTKG 337

The following BLAST results are available for this feature:
BLAST of CSPI04G21440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G21440 vs. TrEMBL
Match NameE-valueIdentityDescription
A5ASG5_VITVI4.7e-3252.99Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013246 PE=4 SV=1[more]
A0A0V0H396_SOLCH3.1e-3153.73Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1[more]
Q9LJS5_ARATH1.2e-3042.51TNP2-like transposon protein-like OS=Arabidopsis thaliana PE=4 SV=1[more]
A5AEV7_VITVI3.4e-3048.91Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018031 PE=4 SV=1[more]
U5CUH5_AMBTC2.9e-2942.95Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s05566p00003390 PE=4 SV=... [more]
BLAST of CSPI04G21440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G21440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086523|ref|XP_008443978.1|1.3e-3860.58PREDICTED: uncharacterized protein LOC103487435 [Cucumis melo][more]
gi|659126160|ref|XP_008463041.1|1.1e-3454.74PREDICTED: uncharacterized protein LOC103501282 [Cucumis melo][more]
gi|731379130|ref|XP_010668374.1|5.5e-3440.64PREDICTED: uncharacterized protein LOC104885382 [Beta vulgaris subsp. vulgaris][more]
gi|659121346|ref|XP_008460612.1|1.2e-3351.82PREDICTED: uncharacterized protein LOC103499390 [Cucumis melo][more]
gi|697184124|ref|XP_009601086.1|1.2e-3346.39PREDICTED: uncharacterized protein LOC104096432 [Nicotiana tomentosiformis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004242Transposase_21
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G21440.1CSPI04G21440.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004242Transposon, En/Spm-likePFAMPF02992Transposase_21coord: 37..170
score: 3.7
NoneNo IPR availablePANTHERPTHR10775UNCHARACTERIZEDcoord: 5..169
score: 6.2
NoneNo IPR availablePANTHERPTHR10775:SF102SUBFAMILY NOT NAMEDcoord: 5..169
score: 6.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G21440Cucumber (Chinese Long) v3cpicucB212
CSPI04G21440Watermelon (97103) v2cpiwmbB313
CSPI04G21440Cucumber (Gy14) v1cgycpiB043
CSPI04G21440Cucurbita maxima (Rimu)cmacpiB469
CSPI04G21440Cucurbita moschata (Rifu)cmocpiB459
CSPI04G21440Cucumber (Chinese Long) v2cpicuB181
CSPI04G21440Watermelon (Charleston Gray)cpiwcgB324
CSPI04G21440Watermelon (97103) v1cpiwmB350
CSPI04G21440Bottle gourd (USVL1VR-Ls)cpilsiB262
CSPI04G21440Cucumber (Gy14) v2cgybcpiB169