CSPI04G20840 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G20840
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTransposon Ty3-I Gag-Pol polyprotein
LocationChr4 : 19198985 .. 19200939 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATACATTGGCCATCCCAGATCATGACATTTCAGATGGGAAAGAAACAGATTATCCACAAGGGTGATCCTTCACTTATTAGGGCTGAATGTTCTTTGAAAACCATAGAAAAAACATGGGAGGAGGATGATCAAGGCTTCTTACTAGAAATGCAGAGCTATGAGGCAGAGAAAGATGAGGAATCAAATGAAGTACAGAGAATGAAGGGTGATGAGGAGGAGTCCTCAATGATTCAATTCTTACTCCAGCAGTACACAGATTTATTTGAAGAACCTAAGAGGCTACCACCTAAAAGGGAGGTTGACCATCGTATTTTGATGTTGCCGGCTAGAAAGAAGAAATTGAGAAGTTGGTAACCAAGATGCTCCAAGTTGGGATAATACGACCCAATCACAACCCCTACTCTAGCCTTGTTTTGTTGGTTAGAAAGAAAGTTGGATGATGGAGGTTCTGCGTTGACTACAAAAAAAATAAATCAAGTAACCGTATCGGATAAATTTCCAATACCTGTGATACAGGAATTGTTAGATGAGTTGCACGGGGCCACAATCTTCTCAAAGTTGGACCTTAAATCAGGGTATCATTAGATACGGATGAAGGACTATGAGTTTTTGGTCATGTCGTTCGGCCTCACCAACACACCAGCTACTTTCCAATCATTAATGGATCAGGTATTTAAACCTTTTCTCAGAAGATGTGTATTGGTTTTTTTTTACGATATACTTGTGTATAGCACAGACCTCACAGAGCATGAGAAGCATTTGGGCATGGTATTTGCAGTAATGAGGGATAACCAGTTAGTTGCCAACAAAAAAAAAAAACGTGTGATAGATCATTTGCATATTCAATATTTGGGACATTTAATATTGTAGAGGCCGATGAAGAAAAGATTAAGGACATGGTAAATTGGCCCCAACCTAAAGATGTAACTAGATTGAGGGGGGTTTTTAGGCTTGACTAGTTACTACAGAAGATTCGTCAAAGGATATGGGGAAATGTCAGGACCTTTGACCAAGCTACTGCAAAAGAACTCATTCCTAAGGGGGGAAGAAGCAACAAAGGCATTTGATAAGTTGAAATTGGCCATGACAACCCTACCCGTACTAGCTCTACCAGATTGGAACCTACCCTTCATCATTGAAACGGATGCGTCCGGGATTTCTTTAGGGGTAGTTCTATCTCAAAATGGCCACCCTATAGCTTTTTTTTATCAGAAACTATCACCCCGAGCTCGAACCAAGTCCATATATGAGAGGGAATTGATGGCCATGGTCCGACCGGTACAAAAGTGGAGACATTACCTTTTGGAAAGGAAGTTCACAATCATCTCATATCAGAGAGTCCTCAAAGCAAAGCAGCCGATGCCCTCTCCTGAATAGAACAGTCAATGGAATTGAGGAGTATGTCCACCACGGGTATTGTTAACATGGAAGTGGTTGAGAAGGAAGTCGAGTTAGATGAGGATCTTAAGGCAATCGTTGAAGAATTAAAAGAAACTCCTAATGAGTCTAATAAATTCCAATGGTTGAATGGAAACCTACTGTATAAGAAGCGAATTGTTCTGTCCAAGAAATCCTCCTTGATCCCGACCCTATTACATACGTTTCATGACTCCATTTTAGGAGGCCACTTCGGATTCTTAACGGCCTATAAAAGAATGAGTGGGGAACTGTATTGGAAGGGCATGAAAGCTGATGTAAAAAAATATGTGGAGTGTGAGGTATGCCAGAGAAATAAGTTGGAAGCAACTAAACCAACCGGAGTTCTACAGTCAATTTCAATCACTGAAAGAATTTTGGAAGAATGGTTCATGGACTTCATTGAAGGGTTACTTAAGGTAGGAGGGATGAATGCGATATTGGTAATAGTGGACCGACTAAGCAAATATTCTTACTTTATCACCATGAGGCATCCTTTTACTGCTAAGCAAGTGGCTGAAGTGTGCTTCTAA

mRNA sequence

ATGAAGATACATTGGCCATCCCAGATCATGACATTTCAGATGGGAAAGAAACAGATTATCCACAAGGGTGATCCTTCACTTATTAGGGCTGAATGTTCTTTGAAAACCATAGAAAAAACATGGGAGGAGGATGATCAAGGCTTCTTACTAGAAATGCAGAGCTATGAGGCAGAGAAAGATGAGGAATCAAATGAAGTACAGAGAATGAAGGGTGATGAGGAGGAGTCCTCAATGATTCAATTCTTACTCCAGCAGTACACAGATTTATTTGAAGAACCTAAGAGGCTACCACCTAAAAGGGAGGTTGACCATCGTATTTTGATGTTGCCGGCTAGAAAGAAGAAATTGAGAAAAAGAAAGTTGGATGATGGAGGTTCTGCGTTGACTACAAAAAAAATAAATCAAGTAACCGTATCGGATAAATTTCCAATACCTGTGATACAGGAATTGTTAGATGAGTTGCACGGGGCCACAATCTTCTCAAAGTTGGACCTTAAATCAGGCACAGACCTCACAGAGCATGAGAAGCATTTGGGCATGGTATTTGCAGTAATGAGGGATAACCATTACTACAGAAGATTCGTCAAAGGATATGGGGAAATGTCAGGACCTTTGACCAAGCTACTGCAAAAGAACTCATTCCTAAGGGGGGAAGAAGCAACAAAGGCATTTGATAAGTTGAAATTGGCCATGACAACCCTACCCGTACTAGCTCTACCAGATTGGAACCTACCCTTCATCATTGAAACGGATGCGTCCGGGATTTCTTTAGGGGTAGTTCTATCTCAAAATGGCCACCCTATAGCTTTTTTTTATCAGAAACTATCACCCCGAGCTCGAACCAAGTCCATATATGAGAGGGAATTGATGGCCATGGTCCGACCGTCAATGGAATTGAGGAGTATGTCCACCACGGGTATTGTTAACATGGAAGTGGTTGAGAAGGAAGTCGAGTTAGATGAGGATCTTAAGGCAATCGTTGAAGAATTAAAAGAAACTCCTAATGAGTCTAATAAATTCCAATGGTTGAATGGAAACCTACTGTATAAGAAGCGAATTGTTCTGTCCAAGAAATCCTCCTTGATCCCGACCCTATTACATACGTTTCATGACTCCATTTTAGGAGGCCACTTCGGATTCTTAACGGCCTATAAAAGAATGAGTGGGGAACTGTATTGGAAGGGCATGAAAGCTGATGTAAAAAAATATGTGGAGTGTGAGGTATGCCAGAGAAATAAGTTGGAAGCAACTAAACCAACCGGAGTTCTACAGTCAATTTCAATCACTGAAAGAATTTTGGAAGAATGGTTCATGGACTTCATTGAAGGGTTACTTAAGGTAGGAGGGATGAATGCGATATTGGTAATAGTGGACCGACTAAGCAAATATTCTTACTTTATCACCATGAGGCATCCTTTTACTGCTAAGCAAGTGGCTGAAGTGTGCTTCTAA

Coding sequence (CDS)

ATGAAGATACATTGGCCATCCCAGATCATGACATTTCAGATGGGAAAGAAACAGATTATCCACAAGGGTGATCCTTCACTTATTAGGGCTGAATGTTCTTTGAAAACCATAGAAAAAACATGGGAGGAGGATGATCAAGGCTTCTTACTAGAAATGCAGAGCTATGAGGCAGAGAAAGATGAGGAATCAAATGAAGTACAGAGAATGAAGGGTGATGAGGAGGAGTCCTCAATGATTCAATTCTTACTCCAGCAGTACACAGATTTATTTGAAGAACCTAAGAGGCTACCACCTAAAAGGGAGGTTGACCATCGTATTTTGATGTTGCCGGCTAGAAAGAAGAAATTGAGAAAAAGAAAGTTGGATGATGGAGGTTCTGCGTTGACTACAAAAAAAATAAATCAAGTAACCGTATCGGATAAATTTCCAATACCTGTGATACAGGAATTGTTAGATGAGTTGCACGGGGCCACAATCTTCTCAAAGTTGGACCTTAAATCAGGCACAGACCTCACAGAGCATGAGAAGCATTTGGGCATGGTATTTGCAGTAATGAGGGATAACCATTACTACAGAAGATTCGTCAAAGGATATGGGGAAATGTCAGGACCTTTGACCAAGCTACTGCAAAAGAACTCATTCCTAAGGGGGGAAGAAGCAACAAAGGCATTTGATAAGTTGAAATTGGCCATGACAACCCTACCCGTACTAGCTCTACCAGATTGGAACCTACCCTTCATCATTGAAACGGATGCGTCCGGGATTTCTTTAGGGGTAGTTCTATCTCAAAATGGCCACCCTATAGCTTTTTTTTATCAGAAACTATCACCCCGAGCTCGAACCAAGTCCATATATGAGAGGGAATTGATGGCCATGGTCCGACCGTCAATGGAATTGAGGAGTATGTCCACCACGGGTATTGTTAACATGGAAGTGGTTGAGAAGGAAGTCGAGTTAGATGAGGATCTTAAGGCAATCGTTGAAGAATTAAAAGAAACTCCTAATGAGTCTAATAAATTCCAATGGTTGAATGGAAACCTACTGTATAAGAAGCGAATTGTTCTGTCCAAGAAATCCTCCTTGATCCCGACCCTATTACATACGTTTCATGACTCCATTTTAGGAGGCCACTTCGGATTCTTAACGGCCTATAAAAGAATGAGTGGGGAACTGTATTGGAAGGGCATGAAAGCTGATGTAAAAAAATATGTGGAGTGTGAGGTATGCCAGAGAAATAAGTTGGAAGCAACTAAACCAACCGGAGTTCTACAGTCAATTTCAATCACTGAAAGAATTTTGGAAGAATGGTTCATGGACTTCATTGAAGGGTTACTTAAGGTAGGAGGGATGAATGCGATATTGGTAATAGTGGACCGACTAAGCAAATATTCTTACTTTATCACCATGAGGCATCCTTTTACTGCTAAGCAAGTGGCTGAAGTGTGCTTCTAA
Homology
[Close]
BLAST of CSPI04G20840 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-16
Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = 1 

Query: 190 YYRRFVKGYGEMSGPLTKLLQKNSFLRGE--EATKAFDKLKLAMTTLPVLALPDWNLPFI 249
           YYR+F+  Y +++ P+T  L+K + +  +  E  +AF+KLK  +   P+L LPD+   F+
Sbjct: 450 YYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFV 509

Query: 250 IETDASGISLGVVLSQNGHPIAFFYQKLSPRARTKSIYERELMAMV 294
           + TDAS ++LG VLSQNGHPI+F  + L+      S  E+EL+A+V
Sbjct: 510 LTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIV 555

[Close]
BLAST of CSPI04G20840 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.6e-15
Identity = 41/106 (38.68%), Postives = 67/106 (63.21%), Query Frame = 1 

Query: 190 YYRRFVKGYGEMSGPLTKLLQKNSFL--RGEEATKAFDKLKLAMTTLPVLALPDWNLPFI 249
           YYR+F+  + +++ P+TK L+KN  +     E   AF KLK  ++  P+L +PD+   F 
Sbjct: 451 YYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFT 510

Query: 250 IETDASGISLGVVLSQNGHPIAFFYQKLSPRARTKSIYERELMAMV 294
           + TDAS ++LG VLSQ+GHP+++  + L+      S  E+EL+A+V
Sbjct: 511 LTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIV 556

[Close]
BLAST of CSPI04G20840 vs. Swiss-Prot
Match: M860_ARATH (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-11
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 190 YYRRFVKGYGEMSGPLTKLLQKNSFLRGEEATKAFDKLKLAMTTLPVLALPDWNLPFI 248
           YYRRFVK YG++  PLT+LL+KNS    E A  AF  LK A+TTLPVLALPD  LPF+
Sbjct: 75  YYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV 132

[Close]
BLAST of CSPI04G20840 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-10
Identity = 52/185 (28.11%), Postives = 91/185 (49.19%), Query Frame = 1 

Query: 307  IVNMEVVEKEVELDEDLKAIVE-----ELKETPNESNKFQWLNGNLLYKKRIVLSKKSSL 366
            +++M+ + +     ED+ A        EL ET  ++   +  +  + Y+ R+V+  K   
Sbjct: 1040 LIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLE--DEMIYYQDRLVVPIKQQ- 1099

Query: 367  IPTLLHTFHD-SILGGHFGFLTAYKRMSGELYWKGMKADVKKYVE-CEVCQRNKLEATKP 426
               ++  +HD ++ GGHFG      ++S   YW  ++  + +Y+  C  CQ  K    + 
Sbjct: 1100 -NAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRL 1159

Query: 427  TGVLQSISITERILEEWFMDFIEGLLKVGG-MNAILVIVDRLSKYSYFITMRHPFTAKQV 484
             G+LQ + I E    +  MDF+ GL      +N ILV+VDR SK ++FI  R    A Q+
Sbjct: 1160 HGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQL 1219

[Close]
BLAST of CSPI04G20840 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-10
Identity = 52/185 (28.11%), Postives = 91/185 (49.19%), Query Frame = 1 

Query: 307  IVNMEVVEKEVELDEDLKAIVE-----ELKETPNESNKFQWLNGNLLYKKRIVLSKKSSL 366
            +++M+ + +     ED+ A        EL ET  ++   +  +  + Y+ R+V+  K   
Sbjct: 1066 LIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLE--DEMIYYQDRLVVPIKQQ- 1125

Query: 367  IPTLLHTFHD-SILGGHFGFLTAYKRMSGELYWKGMKADVKKYVE-CEVCQRNKLEATKP 426
               ++  +HD ++ GGHFG      ++S   YW  ++  + +Y+  C  CQ  K    + 
Sbjct: 1126 -NAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRL 1185

Query: 427  TGVLQSISITERILEEWFMDFIEGLLKVGG-MNAILVIVDRLSKYSYFITMRHPFTAKQV 484
             G+LQ + I E    +  MDF+ GL      +N ILV+VDR SK ++FI  R    A Q+
Sbjct: 1186 HGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQL 1245

[Close]
BLAST of CSPI04G20840 vs. TrEMBL
Match: A0A151TXZ2_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_011108 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.0e-71
Identity = 188/528 (35.61%), Postives = 285/528 (53.98%), Query Frame = 1 

Query: 5   WPSQIMTFQMGKKQIIHKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYEAEKDEESN 64
           W  QIM F    K+I  KG+ +L R   SL        ++  G +              +
Sbjct: 466 WKKQIMEFNYEGKKIQLKGEVNLGRVFESLFCFLNQEVQEINGVMWP------------S 525

Query: 65  EVQRMKGDE------EESSMIQFLLQQYTDLFEEPKRLPPKREVDHRILM---------- 124
            +Q+ KG E      E+   +Q +LQ ++++F EPK LPPKR  +H I++          
Sbjct: 526 NIQKAKGCEGEGLTDEQEGRLQRILQNFSEVFLEPKGLPPKRTKEHVIVLKQGAEPVNVR 585

Query: 125 ---LPARKKKLRKRKLDD---------GGSALTT------------------KKINQVTV 184
               P  +K+  +R++D+           SA ++                  + +N+ T+
Sbjct: 586 PYRYPHYQKEEIERQVDELLKFGVIRPSTSAYSSPVILVRKKDHTWRMCVDYRALNKETI 645

Query: 185 SDKFPIPVIQELLDELHGATIFSKLDLKSG-TDLTEHEKHLGMVFAVMRDNHY---YRRF 244
            DK+PIPVI+ELLDEL+GA+ FSKLDLKSG   +   E+ +        + HY     +F
Sbjct: 646 PDKYPIPVIEELLDELNGASYFSKLDLKSGYHQIRVREEDIPKTAFRTHNGHYEYLVIKF 705

Query: 245 VKGYGEMSGPLTKLLQKNSFLRGEEATKAFDKLKLAMTTLPVLALPDWNLPFIIETDASG 304
           +K YG+++ PLT L +K  F  GE+A  AF++LK AMT  PVL LPD+   F+IE DA+G
Sbjct: 706 IKDYGKIAKPLTDLTRKEGFHWGEQAQTAFERLKKAMTEAPVLRLPDFTKEFVIECDAAG 765

Query: 305 ISLGVVLSQNGHPIAFFYQKLSPRARTKSIYERELMAMVRPSMELRSMSTTGIVNMEVVE 364
             LG V+ + G       Q  +  A ++S  E EL  +V         S    ++  +V+
Sbjct: 766 RGLGAVIYKPGP------QNKAADALSRSKEEVELQVLV---------SKPEWLDSSMVQ 825

Query: 365 KEVELDEDLKAIVEELKETPNESNKFQWLNGNLLYKKRIVLSKKSSLIPTLLHTFHDSIL 424
           +E+  D  L+ +V +L + P     F   +  L Y  R+V+S  SS IP LLH FH +  
Sbjct: 826 EEIHHDSYLQGVVSDLHKDPTSRPGFSIKHDILFYYGRLVISANSSWIPILLHEFHSTPT 885

Query: 425 GGHFGFLTAYKRMSGELYWKGMKADVKKYV-ECEVCQRNKLEATKPTGVLQSISITERIL 482
           GGH G+   Y+R++  +YW GMK  V+ +V EC++CQR K +A  P+G+LQ + I E+I 
Sbjct: 886 GGHSGYYRTYRRLAENVYWCGMKKRVQDFVKECDICQRQKYQAQCPSGLLQPLDIPEQIW 945

[Close]
BLAST of CSPI04G20840 vs. TrEMBL
Match: A0A151RRQ4_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_033252 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 8.9e-67
Identity = 152/365 (41.64%), Postives = 211/365 (57.81%), Query Frame = 1 

Query: 120 KLDDGG--SALTTKKINQVTVSDKFPIPVIQELLDELHGATIFSKLDLKSGTDLTEHEKH 179
           K  DGG    +  + +N++T+ DKF IP+I ELLDEL GA IFSKLDL+S        + 
Sbjct: 597 KKKDGGWRFCVDYRALNKITIPDKFLIPIIDELLDELGGAVIFSKLDLRSSYHQIRMREE 656

Query: 180 LGMVFAVMRDNHYYRRFVKGYGEMSGPLTKLLQKNSFLRGEEATKAFDKLKLAMTTLPVL 239
                A      +Y RFV+ YG+++ PLT+LL+K+ F    EA  A DKLK  ++ LP+L
Sbjct: 657 DIHKTAFRTHEGHYERFVRDYGKIARPLTQLLKKDKFQWNAEAQAALDKLKHLVSELPIL 716

Query: 240 ALPDWNLPFIIETDASGISLGVVLSQNGHPIAFFYQKLSPRARTKSIYERELMAMVRPSM 299
             PD++  FIIETDAS   LG VL Q G                    E  ++  +   M
Sbjct: 717 TDPDFSKTFIIETDASNKGLGAVLMQEGR-------------------ENGVVDALSRKM 776

Query: 300 ELRSMSTTGIVNMEVVEKEVELDEDLKAIVEELKETPNESNKFQWLNGNLLYKKRIVLSK 359
              ++S+     M   E E+  D  L+ I+ +L +  N    +++ N  L YK R+VL K
Sbjct: 777 TFSALSSIHFEQMADWESEIHQDPKLQGIIHDLIKDCNSHPGYKFQNQKLFYKGRLVLPK 836

Query: 360 KSSLIPTLLHTFHDSILGGHFGFLTAYKRMSGELYWKGMKADVKKYVE-CEVCQRNKLEA 419
            SS IP LL  FH+S +G H GF   YKR+S  +YW+GM+ D++ +V  CE CQRNK +A
Sbjct: 837 GSSHIPLLLQEFHNSAIGVHSGFFRTYKRISEVVYWEGMRKDIQHHVATCETCQRNKYQA 896

Query: 420 TKPTGVLQSISITERILEEWFMDFIEGLLKVGGMNAILVIVDRLSKYSYFITMRHPFTAK 479
             P  +LQ + I  ++  +  MDFIEGL K  G N ILV+VDRL+KY++F+ + HPFTAK
Sbjct: 897 LSPARLLQPLPIPNQVWADISMDFIEGLPKAQGKNVILVVVDRLTKYAHFLALSHPFTAK 942

Query: 480 QVAEV 482
           +VAEV
Sbjct: 957 EVAEV 942

[Close]
BLAST of CSPI04G20840 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 147/328 (44.82%), Postives = 199/328 (60.67%), Query Frame = 1 

Query: 190 YYRRFVKGYGEMSGPLTKLLQKNSFLRGEEATKAFDKLKLAMTTLPVLALPDWNLPFIIE 249
           YYRRFV  YG ++ PLT+L +KN F    E T AF++LK AM TLP+LALPD+  PF +E
Sbjct: 655 YYRRFVANYGTIAAPLTRLTKKN-FHWTTETTFAFEQLKTAMVTLPILALPDFQQPFELE 714

Query: 250 TDASGISLGVVLSQNGHPIAFFYQKLSPRARTKS------IYERELMAMVRP------SM 309
           TDASG  LG VLSQN   IA+F QKLS   + KS      + +REL+  ++       S 
Sbjct: 715 TDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSKALRYTLEQRELIPGIQKWLMKLMSF 774

Query: 310 ELRSMSTTGIVN-----MEVVEKEVEL--------------------DEDLKAIVEELKE 369
           +       G  N     +  +  E +L                    D+ LK I E+L +
Sbjct: 775 DFEIFYRAGPENKAADALSRIPGEAQLNAIAVPSILDVKVVEKEVQEDDKLKDIFEQLLK 834

Query: 370 TPNESNKFQWLNGNLLYKKRIVLSKKSSLIPTLLHTFHDSILGGHFGFLTAYKRMSGELY 429
            P+   ++    G L YK R+VL K SSL+PT+LHTFHD ++GGH G L  YKR++ ELY
Sbjct: 835 DPDSIPRYSIKQGRLFYKGRLVLPKTSSLLPTILHTFHDLVVGGHSGQLRTYKRIAAELY 894

Query: 430 WKGMKADVKKYV-ECEVCQRNKLEATKPTGVLQSISITERILEEWFMDFIEGLLKVGGMN 480
           W+GMK D+K YV +C VCQ+NK +A  P G+LQ + I  RI E+  MDFIEGL +    +
Sbjct: 895 WEGMKNDIKIYVDQCPVCQQNKTQALSPAGLLQPLPIPSRIWEDISMDFIEGLPRSRTFD 954

[Close]
BLAST of CSPI04G20840 vs. TrEMBL
Match: A0A151SHK9_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_000426 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.7e-63
Identity = 176/525 (33.52%), Postives = 273/525 (52.00%), Query Frame = 1 

Query: 1   MKIHWPSQIMTFQMGKKQIIHKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYEAEKD 60
           +K++W S  M F      I  +GD SL +   + K + K  +   +   +    +  E  
Sbjct: 98  VKVNWGSLQMNFN-----ITIQGDRSLSKEMITTKALRKLHQRSVESMAI---LWIGENH 157

Query: 61  EESNEVQRMKGDEEESSMIQFLLQQYTDLFEEPKRLPPKREVDHRILML---------PA 120
            ++     +  +E+    +Q +L+++  +F  P+ LPP R+ DH+I +          P 
Sbjct: 158 LDTPHQLTISQEEQ----LQQILREFHVVFSIPQTLPPHRDADHKISIKAGVDPINVRPY 217

Query: 121 RKKKLRKRKLDDGGSALTT-------------------------------KKINQVTVSD 180
           R   L+K +++     + T                               + +N+ T+ D
Sbjct: 218 RYPYLQKNEIEKQVDEMLTVGLIRPSNSPYSSPVILVKKKDGSWRFCVDYRALNKATIPD 277

Query: 181 KFPIPVIQELLDELHGATIFSKLDLKSGT-DLTEHEKHLGMVFAVMRDNHYYRRFVKGYG 240
           KF IP+I+ELLDEL GAT FSK+DL++G   +  HE  +           YYRRF++ YG
Sbjct: 278 KFLIPMIEELLDELKGATYFSKIDLRAGYHQIRMHEPDIPKTAC------YYRRFIRDYG 337

Query: 241 EMSGPLTKLLQKNSFLRGEEATKAFDKLKLAMTTLPVLALPDWNLPFIIETDASGISLGV 300
           +++ PLT+LL+K +F   E++  AF +L+ A+T  PVLA+PD++  F IE DASG  +G 
Sbjct: 338 KIARPLTELLKKGNFDWVEQSIVAFKQLQRAVTEAPVLAMPDFSKHFEIECDASGKGVGA 397

Query: 301 VLSQNG--HPIAFFYQKLSPRARTKSIYERELMAMVRPSMELRSMSTTGIVNMEVVEKEV 360
           VL+Q G  + +A    +L          E+EL  + +P  +          ++  +++EV
Sbjct: 398 VLTQVGASNKVADALSRLEE--------EKELQGISKPFWQ----------DIVEIDEEV 457

Query: 361 ELDEDLKAIVEELKETPNESNKFQWLNGNLLYKKRIVLSKKSSLIPTLLHTFHDSILGGH 420
             D +L  I   L    N    +   N  L YK R+VLS  S+ IP LLH FH +  GGH
Sbjct: 458 HSDPELAKIKTALLHDSNSYKHYTLENDRLHYKGRLVLSATSAWIPKLLHEFHVTPTGGH 517

Query: 421 FGFLTAYKRMSGELYWKGMKADVKKYV-ECEVCQRNKLEATKPTGVLQSISITERILEEW 480
            G    Y+R++  LYW GMK  + +YV  C VCQRNK  A+ P G+LQ + I   I EE 
Sbjct: 518 SGIYRTYRRVAQSLYWLGMKNTITQYVVACPVCQRNKYLASSPAGLLQPLPIPNAIWEEI 577

Query: 481 FMDFIEGLLKVGGMNAILVIVDRLSKYSYFITMRHPFTAKQVAEV 482
            MDFI GL +  G +AI+V+VDRLSKY +FI ++HP++AK +A++
Sbjct: 578 SMDFIVGLPRSKGFDAIMVVVDRLSKYGHFILIKHPYSAKSIADL 586

[Close]
BLAST of CSPI04G20840 vs. TrEMBL
Match: A0A151QW17_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_044474 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.8e-59
Identity = 136/353 (38.53%), Postives = 205/353 (58.07%), Query Frame = 1 

Query: 131 KKINQVTVSDKFPIPVIQELLDELHGATIFSKLDLKSGTDLTEHEKHLGMVFAVMRDNHY 190
           +++NQ+T+ D+FPIP+I++L+DEL GAT+FSKLDLKSG      +   G  +      H 
Sbjct: 240 RRLNQLTIKDRFPIPLIEDLMDELCGATVFSKLDLKSGYHQVRMKA--GEEYKTAFKTHA 299

Query: 191 -YRRFVKGYGEMSGPLTKLLQKNSFLRGEEATKAFDKLKLAMTTLPVLALPDWNLPFIIE 250
            +  FV  +G+++ PLT +L+K  F   EE+  AF  LK A+ T PVLALP+++ PF+IE
Sbjct: 300 GHFEFVSNFGKIAKPLTDMLKKEGFTWLEESLAAFHTLKKALVTAPVLALPNFSKPFVIE 359

Query: 251 TDASGISLGVVLSQNGHPIAFFYQKLSPRARTKSIYERELMAMVRPSMELRSMSTTGIVN 310
           TDASG  +G VL Q+ HPIA+    LS       +   EL+ ++  + +   +     + 
Sbjct: 360 TDASGKGIGAVLMQDHHPIAYITDSLS------RLTGAELLPLLLENAQHGLLDQIKAIW 419

Query: 311 MEVVEKEVELDEDLKAIVEELKETPNESNKFQWLNGNLLYKKRIVLSKKSSLIPTLLHTF 370
           +         D  L+ I+ +LK+ P+    F W    L  K ++V+ +  +L   +L   
Sbjct: 420 LS--------DSTLQQIISDLKQNPSSHPNFTWHREELRRKGKLVIGEDLALKDVILKWL 479

Query: 371 HDSILGGHFGFLTAYKRMSGELYWKGMKADVKKYV-ECEVCQRNKLEATKPTGVLQSISI 430
           HDS LGGH G      R+    +WKGM  D+++YV +C++CQ+ K E     G+LQ + I
Sbjct: 480 HDSPLGGHSGRDVTAARVKSLFFWKGMLKDIQQYVRKCDICQKCKPELAAYPGLLQPLPI 539

Query: 431 TERILEEWFMDFIEGLLKVGGMNAILVIVDRLSKYSYFITMRHPFTAKQVAEV 482
             RI +   MDFIEGL    G   ILV+VDRL KY++F+ + HP+TA +VA+V
Sbjct: 540 PNRIWDAISMDFIEGLPSSAGQQVILVVVDRLRKYAHFLPLSHPYTALKVAQV 576

[Close]
BLAST of CSPI04G20840 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-12
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 190 YYRRFVKGYGEMSGPLTKLLQKNSFLRGEEATKAFDKLKLAMTTLPVLALPDWNLPFI 248
           YYRRFVK YG++  PLT+LL+KNS    E A  AF  LK A+TTLPVLALPD  LPF+
Sbjct: 75  YYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV 132

[Close]
BLAST of CSPI04G20840 vs. NCBI nr
Match: gi|659118472|ref|XP_008459139.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103498341 [Cucumis melo])

HSP 1 Score: 303.9 bits (777), Expect = 5.0e-79
Identity = 163/303 (53.80%), Postives = 216/303 (71.29%), Query Frame = 1 

Query: 190 YYRRFVKGYGEMSGPLTKLLQKNSFLRGEEATKAFDKLKLAMTTLPVLALPDWNLPFIIE 249
           YYRRFVK YG ++  LTKLLQKN F   ++AT AF+ LK AM ++PVL+LP+++LPFIIE
Sbjct: 101 YYRRFVKNYGNIATLLTKLLQKNGFHWCDDATIAFELLKQAMISVPVLSLPNFSLPFIIE 160

Query: 250 TDASGISLGVVLSQNG----HPIAFFYQKLSPRARTKSIY-------ERELMAMVRPSME 309
           TDASG   G+  S +G     P+    QK+    R++ +          + ++ V+   E
Sbjct: 161 TDASGT--GINGSSDGCTEVAPLRA-RQKIHDSFRSEGLEILNGTKGAADALSRVKLPAE 220

Query: 310 LRSMSTTGIVNMEVVEKEVELDEDLKAIVEELKETPNESNKFQWLNGNLLYKKRIVLSKK 369
           L S+   G++++E+V  EVE DE+L+ I+  LKE P     +QW +GNLLYK R+V+SK 
Sbjct: 221 LNSLRAHGLLDIEIVTTEVEKDEELQDIINILKENPEGKANYQWKSGNLLYKGRLVMSKN 280

Query: 370 SSLIPTLLHTFHDSILGGHFGFLTAYKRMSGELYWKGMKADVKKYVE-CEVCQRNKLEAT 429
            +LIP+LLHTFHDS+LGGH GFL  YKRM+GE++W GMK DVKKYVE CE+CQRNK EA 
Sbjct: 281 FTLIPSLLHTFHDSVLGGHLGFLKTYKRMNGEIHWMGMKNDVKKYVEQCEICQRNKTEAL 340

Query: 430 KPTGVLQSISITERILEEWFMDFIEGLLKVGGMNAILVIVDRLSKYSYFITMRHPFTAKQ 481
            P G+LQ + +   ILE+W MDFIEGL K GG ++I+VIVDRLSK ++FIT++HPFTAKQ
Sbjct: 341 APAGLLQPLPLPNLILEDWTMDFIEGLPKAGGYDSIMVIVDRLSKMAHFITLKHPFTAKQ 400

[Close]
BLAST of CSPI04G20840 vs. NCBI nr
Match: gi|1012360650|gb|KYP71834.1| (Retrotransposable element Tf2 [Cajanus cajan])

HSP 1 Score: 278.1 bits (710), Expect = 2.9e-71
Identity = 188/528 (35.61%), Postives = 285/528 (53.98%), Query Frame = 1 

Query: 5   WPSQIMTFQMGKKQIIHKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYEAEKDEESN 64
           W  QIM F    K+I  KG+ +L R   SL        ++  G +              +
Sbjct: 466 WKKQIMEFNYEGKKIQLKGEVNLGRVFESLFCFLNQEVQEINGVMWP------------S 525

Query: 65  EVQRMKGDE------EESSMIQFLLQQYTDLFEEPKRLPPKREVDHRILM---------- 124
            +Q+ KG E      E+   +Q +LQ ++++F EPK LPPKR  +H I++          
Sbjct: 526 NIQKAKGCEGEGLTDEQEGRLQRILQNFSEVFLEPKGLPPKRTKEHVIVLKQGAEPVNVR 585

Query: 125 ---LPARKKKLRKRKLDD---------GGSALTT------------------KKINQVTV 184
               P  +K+  +R++D+           SA ++                  + +N+ T+
Sbjct: 586 PYRYPHYQKEEIERQVDELLKFGVIRPSTSAYSSPVILVRKKDHTWRMCVDYRALNKETI 645

Query: 185 SDKFPIPVIQELLDELHGATIFSKLDLKSG-TDLTEHEKHLGMVFAVMRDNHY---YRRF 244
            DK+PIPVI+ELLDEL+GA+ FSKLDLKSG   +   E+ +        + HY     +F
Sbjct: 646 PDKYPIPVIEELLDELNGASYFSKLDLKSGYHQIRVREEDIPKTAFRTHNGHYEYLVIKF 705

Query: 245 VKGYGEMSGPLTKLLQKNSFLRGEEATKAFDKLKLAMTTLPVLALPDWNLPFIIETDASG 304
           +K YG+++ PLT L +K  F  GE+A  AF++LK AMT  PVL LPD+   F+IE DA+G
Sbjct: 706 IKDYGKIAKPLTDLTRKEGFHWGEQAQTAFERLKKAMTEAPVLRLPDFTKEFVIECDAAG 765

Query: 305 ISLGVVLSQNGHPIAFFYQKLSPRARTKSIYERELMAMVRPSMELRSMSTTGIVNMEVVE 364
             LG V+ + G       Q  +  A ++S  E EL  +V         S    ++  +V+
Sbjct: 766 RGLGAVIYKPGP------QNKAADALSRSKEEVELQVLV---------SKPEWLDSSMVQ 825

Query: 365 KEVELDEDLKAIVEELKETPNESNKFQWLNGNLLYKKRIVLSKKSSLIPTLLHTFHDSIL 424
           +E+  D  L+ +V +L + P     F   +  L Y  R+V+S  SS IP LLH FH +  
Sbjct: 826 EEIHHDSYLQGVVSDLHKDPTSRPGFSIKHDILFYYGRLVISANSSWIPILLHEFHSTPT 885

Query: 425 GGHFGFLTAYKRMSGELYWKGMKADVKKYV-ECEVCQRNKLEATKPTGVLQSISITERIL 482
           GGH G+   Y+R++  +YW GMK  V+ +V EC++CQR K +A  P+G+LQ + I E+I 
Sbjct: 886 GGHSGYYRTYRRLAENVYWCGMKKRVQDFVKECDICQRQKYQAQCPSGLLQPLDIPEQIW 945

[Close]
BLAST of CSPI04G20840 vs. NCBI nr
Match: gi|1012333858|gb|KYP45237.1| (Retrotransposable element Tf2 [Cajanus cajan])

HSP 1 Score: 262.7 bits (670), Expect = 1.3e-66
Identity = 152/365 (41.64%), Postives = 211/365 (57.81%), Query Frame = 1 

Query: 120 KLDDGG--SALTTKKINQVTVSDKFPIPVIQELLDELHGATIFSKLDLKSGTDLTEHEKH 179
           K  DGG    +  + +N++T+ DKF IP+I ELLDEL GA IFSKLDL+S        + 
Sbjct: 597 KKKDGGWRFCVDYRALNKITIPDKFLIPIIDELLDELGGAVIFSKLDLRSSYHQIRMREE 656

Query: 180 LGMVFAVMRDNHYYRRFVKGYGEMSGPLTKLLQKNSFLRGEEATKAFDKLKLAMTTLPVL 239
                A      +Y RFV+ YG+++ PLT+LL+K+ F    EA  A DKLK  ++ LP+L
Sbjct: 657 DIHKTAFRTHEGHYERFVRDYGKIARPLTQLLKKDKFQWNAEAQAALDKLKHLVSELPIL 716

Query: 240 ALPDWNLPFIIETDASGISLGVVLSQNGHPIAFFYQKLSPRARTKSIYERELMAMVRPSM 299
             PD++  FIIETDAS   LG VL Q G                    E  ++  +   M
Sbjct: 717 TDPDFSKTFIIETDASNKGLGAVLMQEGR-------------------ENGVVDALSRKM 776

Query: 300 ELRSMSTTGIVNMEVVEKEVELDEDLKAIVEELKETPNESNKFQWLNGNLLYKKRIVLSK 359
              ++S+     M   E E+  D  L+ I+ +L +  N    +++ N  L YK R+VL K
Sbjct: 777 TFSALSSIHFEQMADWESEIHQDPKLQGIIHDLIKDCNSHPGYKFQNQKLFYKGRLVLPK 836

Query: 360 KSSLIPTLLHTFHDSILGGHFGFLTAYKRMSGELYWKGMKADVKKYVE-CEVCQRNKLEA 419
            SS IP LL  FH+S +G H GF   YKR+S  +YW+GM+ D++ +V  CE CQRNK +A
Sbjct: 837 GSSHIPLLLQEFHNSAIGVHSGFFRTYKRISEVVYWEGMRKDIQHHVATCETCQRNKYQA 896

Query: 420 TKPTGVLQSISITERILEEWFMDFIEGLLKVGGMNAILVIVDRLSKYSYFITMRHPFTAK 479
             P  +LQ + I  ++  +  MDFIEGL K  G N ILV+VDRL+KY++F+ + HPFTAK
Sbjct: 897 LSPARLLQPLPIPNQVWADISMDFIEGLPKAQGKNVILVVVDRLTKYAHFLALSHPFTAK 942

Query: 480 QVAEV 482
           +VAEV
Sbjct: 957 EVAEV 942

[Close]
BLAST of CSPI04G20840 vs. NCBI nr
Match: gi|727485485|ref|XP_010418661.1| (PREDICTED: uncharacterized protein LOC104704240 [Camelina sativa])

HSP 1 Score: 255.8 bits (652), Expect = 1.6e-64
Identity = 136/313 (43.45%), Postives = 199/313 (63.58%), Query Frame = 1 

Query: 190 YYRRFVKGYGEMSGPLTKLLQKNSFLRGEEATKAFDKLKLAMTTLPVLALPDWNLPFIIE 249
           YYRRFV GYGE++ PLT +L+K+ F   E++  AFDKL+ AMTT+PVLALP+++  F++E
Sbjct: 168 YYRRFVLGYGEIAKPLTDMLRKDQFEWSEKSEAAFDKLRTAMTTVPVLALPNFSETFVVE 227

Query: 250 TDASGISLGVVLSQNGHPIAFFYQKLSPRARTKSIYERELMAMV---------------- 309
           +DASG  LG VL Q   PIA++ Q LS R R KSIYERELMA+V                
Sbjct: 228 SDASGFGLGAVLMQKERPIAYYNQALSDRQRLKSIYERELMAIVLSVQKWCHYILGRRIG 287

Query: 310 ----RPSMELRSMSTTGIVNMEVVEKEVELDEDLKAIVEELKETPNESNKFQWLNGNLLY 369
               R S+ L ++S    + +E +  EV+ D  L+ I+ +L++  +   +F  +NG LL 
Sbjct: 288 EQGGRCSLSLFAISVPAAIQLEEICAEVDKDPALQVIIRDLRKDGSSHPEFSLVNGRLLR 347

Query: 370 KKRIVLSKKSSLIPTLLHTFHDSILGGHFGFLTAYKRMSGELYWKGMKADVKKYV-ECEV 429
           + ++V+   S+L   ++  FHD  LGGH G L   KR+    +W+GM  D++++V  C V
Sbjct: 348 QGKLVIPSGSALTGLIMREFHDGKLGGHGGVLKTQKRIGELFFWEGMMTDIRRHVAACLV 407

Query: 430 CQRNKLEATKPTGVLQSISITERILEEWFMDFIEGLLKVGGMNAILVIVDRLSKYSYFIT 482
           CQR K     P G+LQ + + E+I ++  MDF+EGL K GG NA+LV+VDRLSK+++F+ 
Sbjct: 408 CQRYKYSTLAPGGLLQPLPVPEKIWKDISMDFVEGLPKSGGNNAVLVVVDRLSKFAHFLI 467

[Close]
BLAST of CSPI04G20840 vs. NCBI nr
Match: gi|307136175|gb|ADN34016.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 252.3 bits (643), Expect = 1.7e-63
Identity = 147/328 (44.82%), Postives = 199/328 (60.67%), Query Frame = 1 

Query: 190 YYRRFVKGYGEMSGPLTKLLQKNSFLRGEEATKAFDKLKLAMTTLPVLALPDWNLPFIIE 249
           YYRRFV  YG ++ PLT+L +KN F    E T AF++LK AM TLP+LALPD+  PF +E
Sbjct: 655 YYRRFVANYGTIAAPLTRLTKKN-FHWTTETTFAFEQLKTAMVTLPILALPDFQQPFELE 714

Query: 250 TDASGISLGVVLSQNGHPIAFFYQKLSPRARTKS------IYERELMAMVRP------SM 309
           TDASG  LG VLSQN   IA+F QKLS   + KS      + +REL+  ++       S 
Sbjct: 715 TDASGFGLGAVLSQNKRLIAYFSQKLSETVKEKSKALRYTLEQRELIPGIQKWLMKLMSF 774

Query: 310 ELRSMSTTGIVN-----MEVVEKEVEL--------------------DEDLKAIVEELKE 369
           +       G  N     +  +  E +L                    D+ LK I E+L +
Sbjct: 775 DFEIFYRAGPENKAADALSRIPGEAQLNAIAVPSILDVKVVEKEVQEDDKLKDIFEQLLK 834

Query: 370 TPNESNKFQWLNGNLLYKKRIVLSKKSSLIPTLLHTFHDSILGGHFGFLTAYKRMSGELY 429
            P+   ++    G L YK R+VL K SSL+PT+LHTFHD ++GGH G L  YKR++ ELY
Sbjct: 835 DPDSIPRYSIKQGRLFYKGRLVLPKTSSLLPTILHTFHDLVVGGHSGQLRTYKRIAAELY 894

Query: 430 WKGMKADVKKYV-ECEVCQRNKLEATKPTGVLQSISITERILEEWFMDFIEGLLKVGGMN 480
           W+GMK D+K YV +C VCQ+NK +A  P G+LQ + I  RI E+  MDFIEGL +    +
Sbjct: 895 WEGMKNDIKIYVDQCPVCQQNKTQALSPAGLLQPLPIPSRIWEDISMDFIEGLPRSRTFD 954

The following BLAST results are available for this feature:
BLAST of CSPI04G20840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POL2_DROME1.2e-1641.51Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
POL3_DROME6.6e-1538.68Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
M860_ARATH2.0e-1163.79Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg0... [more]
YG31B_YEAST1.7e-1028.11Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
YI31B_YEAST1.7e-1028.11Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
BLAST of CSPI04G20840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151TXZ2_CAJCA2.0e-7135.61Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_011108 PE=4 SV=1[more]
A0A151RRQ4_CAJCA8.9e-6741.64Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_033252 PE=4 SV=1[more]
E5GC18_CUCME1.2e-6344.82Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A151SHK9_CAJCA2.7e-6333.52Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_000426 PE=4 SV=1[more]
A0A151QW17_CAJCA1.8e-5938.53Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_044474 PE=4 SV=1[more]
BLAST of CSPI04G20840 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00860.11.1e-1263.79ATMG00860.1 DNA/RNA polymerases superfamily protein[more]
BLAST of CSPI04G20840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659118472|ref|XP_008459139.1|5.0e-7953.80PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103498341 [Cucumis me... [more]
gi|1012360650|gb|KYP71834.1|2.9e-7135.61Retrotransposable element Tf2 [Cajanus cajan][more]
gi|1012333858|gb|KYP45237.1|1.3e-6641.64Retrotransposable element Tf2 [Cajanus cajan][more]
gi|727485485|ref|XP_010418661.1|1.6e-6443.45PREDICTED: uncharacterized protein LOC104704240 [Camelina sativa][more]
gi|307136175|gb|ADN34016.1|1.7e-6344.82ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G20840.1CSPI04G20840.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 424..481
score: 5.3
NoneNo IPR availableunknownCoilCoilcoord: 52..72
scor
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 131..481
score: 1.8
NoneNo IPR availablePANTHERPTHR24559:SF186SUBFAMILY NOT NAMEDcoord: 131..481
score: 1.8
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 83..300
score: 2.45

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G20840Wax gourdcpiwgoB401
CSPI04G20840Wax gourdcpiwgoB411
CSPI04G20840Cucumber (Gy14) v1cgycpiB529
CSPI04G20840Cucurbita maxima (Rimu)cmacpiB679
CSPI04G20840Cucurbita maxima (Rimu)cmacpiB878
CSPI04G20840Cucurbita moschata (Rifu)cmocpiB670
CSPI04G20840Cucurbita moschata (Rifu)cmocpiB858
CSPI04G20840Cucumber (Chinese Long) v2cpicuB181
CSPI04G20840Melon (DHL92) v3.5.1cpimeB333
CSPI04G20840Watermelon (Charleston Gray)cpiwcgB319
CSPI04G20840Watermelon (97103) v1cpiwmB338
CSPI04G20840Cucurbita pepo (Zucchini)cpecpiB066
CSPI04G20840Cucurbita pepo (Zucchini)cpecpiB500
CSPI04G20840Bottle gourd (USVL1VR-Ls)cpilsiB258
CSPI04G20840Melon (DHL92) v3.6.1cpimedB324
CSPI04G20840Cucumber (Gy14) v2cgybcpiB169
CSPI04G20840Silver-seed gourdcarcpiB0315
CSPI04G20840Silver-seed gourdcarcpiB0894
CSPI04G20840Cucumber (Chinese Long) v3cpicucB212
CSPI04G20840Watermelon (97103) v2cpiwmbB308