CSPI04G20740 (gene) Wild cucumber (PI 183967)

NameCSPI04G20740
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionChloride channel protein
LocationChr4 : 18993609 .. 18994836 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCCGGTCTTTCCCTTAATAGAGCTAAAACCTCCCTGATCGATATTAACCTTAGCAGTGGTGACTTAGCTCGTTTTAGTGAATCTACAAGATGCTCGGTTGATTGTCTTCCCTATAAATATTTGGGCTTTTCTATTGGAGGGGGTCATAATAGAAAAGAGATGTGGAACACCCTTGAAGAGCGATTCAGATATAAATTCGATATAAACTCCGGTGCAATCAGTTCTCAATAGCCTCCCTTGTTATCTTTTTTCCCTTGCTCAAGCTCCGGTCGGTGTTATTAATAGATTGAAACAGATGATCAGGAAGTTTGTTTGGACAGGAGGGTCTACGAATCCAATTGCTCACATCGTCAAATGGGATTGCACTTCCACCCCGATTTGTTATAGTGGTCTTGGGATTGGCTCGTTTAGGCAAAAGAATATTGCTCTTCTCACTAAATGGTTTGGGAGGTTTAGTAAGGAAGAAACCTCATTCTGGAGGTGGTTCATTGTGGCCATCTATGGCCTAGAGGAGAATGGGTGGTCTACCAAAGATCCAAACAGGGGAAAATCTTACAGATTATGGACTGGTATTTTAAAGCACAAGGAGATCTTTAATTTTTCTGCTTTTGTTCTGGGAGAAGGAACAAAAATCAGATTTTGGAAGGACAAATGGTGTGTCGCAGAAACACTTACAGAAAAATTTCCTAACTTATTCTCTTTGTCGCTGAAGAAGGATGTTTATGTGGCCGAATGCTGGTTTATTGTTACTCATTCCTGGAATTTGGGCCTTAGAAGAAATATGCTCGATAACGAGATTGCCAATGCGGCGTCAGTTTTAGAAATTCTTCATTCTTGGGCCCCCACTGAAGGGAATGATAGTCTTAAATGGACTCCTAACATTAATGGCAACTTCACTATGAAATCTACTTTTCTTAACTTAACTAAGAGATCCCCCTCCATTGCTGTTCCTTTGATTCGTCATATTTGGAAGAATAAAATTCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGCCTTAACACCAATGAGAAGCTACAAAAAAAAGTTCAGAACACATTGCTTAGCCCCTCGATGTGTTGTCTTTGCTATAAAGGTGAGGAAACTCTGGATCATCTATTTCTACATTGTCTCTTTACAAAAAAAACTTGGAACACTCTGTTTAGTATTTTTGACTTGGAGCTTTGTCTTCCTAGTAAGATTGATAGCTAA

mRNA sequence

ATGGGAGCCGGTCTTTCCCTTAATAGAGCTAAAACCTCCCTGATCGATATTAACCTTAGCAGTGGTGACTTAGCTCGTTTTAGTGAATCTACAAGATGCTCGGTTGATTGTCTTCCCTATAAATATTTGGGCTTTTCTATTGGAGGGGGTCATAATAGAAAAGAGATGTGGAACACCCTTGAAGAGCGATTCAGATATAAATTCGATATAAACTCCGGTGCAATCACTCCGGTCGGTGTTATTAATAGATTGAAACAGATGATCAGGAAGTTTGTTTGGACAGGAGGGTCTACGAATCCAATTGCTCACATCGTCAAATGGGATTGCACTTCCACCCCGATTTGTTATAGTGGTCTTGGGATTGGCTCGTTTAGGCAAAAGAATATTGCTCTTCTCACTAAATGGTTTGGGAGGTTTAGTAAGGAAGAAACCTCATTCTGGAGGTGGTTCATTGTGGCCATCTATGGCCTAGAGGAGAATGGGTGGTCTACCAAAGATCCAAACAGGGGAAAATCTTACAGATTATGGACTGGTATTTTAAAGCACAAGGAGATCTTTAATTTTTCTGCTTTTGTTCTGGGAGAAGGAACAAAAATCAGATTTTGGAAGGACAAATGGTGTGTCGCAGAAACACTTACAGAAAAATTTCCTAACTTATTCTCTTTGTCGCTGAAGAAGGATGTTTATGTGGCCGAATGCTGGTTTATTGTTACTCATTCCTGGAATTTGGGCCTTAGAAGAAATATGCTCGATAACGAGATTGCCAATGCGGCGTCAGTTTTAGAAATTCTTCATTCTTGGGCCCCCACTGAAGGGAATGATAGTCTTAAATGGACTCCTAACATTAATGGCAACTTCACTATGAAATCTACTTTTCTTAACTTAACTAAGAGATCCCCCTCCATTGCTGTTCCTTTGATTCGTCATATTTGGAAGAATAAAATTCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGCCTTAACACCAATGAGAAGCTACAAAAAAAAGTTCAGAACACATTGCTTAGCCCCTCGATGTGTTGTCTTTGCTATAAAGGTGAGGAAACTCTGGATCATCTATTTCTACATTGTCTCTTTACAAAAAAAACTTGGAACACTCTGTTTAGTATTTTTGACTTGGAGCTTTGTCTTCCTAGTAAGATTGATAGCTAA

Coding sequence (CDS)

ATGGGAGCCGGTCTTTCCCTTAATAGAGCTAAAACCTCCCTGATCGATATTAACCTTAGCAGTGGTGACTTAGCTCGTTTTAGTGAATCTACAAGATGCTCGGTTGATTGTCTTCCCTATAAATATTTGGGCTTTTCTATTGGAGGGGGTCATAATAGAAAAGAGATGTGGAACACCCTTGAAGAGCGATTCAGATATAAATTCGATATAAACTCCGGTGCAATCACTCCGGTCGGTGTTATTAATAGATTGAAACAGATGATCAGGAAGTTTGTTTGGACAGGAGGGTCTACGAATCCAATTGCTCACATCGTCAAATGGGATTGCACTTCCACCCCGATTTGTTATAGTGGTCTTGGGATTGGCTCGTTTAGGCAAAAGAATATTGCTCTTCTCACTAAATGGTTTGGGAGGTTTAGTAAGGAAGAAACCTCATTCTGGAGGTGGTTCATTGTGGCCATCTATGGCCTAGAGGAGAATGGGTGGTCTACCAAAGATCCAAACAGGGGAAAATCTTACAGATTATGGACTGGTATTTTAAAGCACAAGGAGATCTTTAATTTTTCTGCTTTTGTTCTGGGAGAAGGAACAAAAATCAGATTTTGGAAGGACAAATGGTGTGTCGCAGAAACACTTACAGAAAAATTTCCTAACTTATTCTCTTTGTCGCTGAAGAAGGATGTTTATGTGGCCGAATGCTGGTTTATTGTTACTCATTCCTGGAATTTGGGCCTTAGAAGAAATATGCTCGATAACGAGATTGCCAATGCGGCGTCAGTTTTAGAAATTCTTCATTCTTGGGCCCCCACTGAAGGGAATGATAGTCTTAAATGGACTCCTAACATTAATGGCAACTTCACTATGAAATCTACTTTTCTTAACTTAACTAAGAGATCCCCCTCCATTGCTGTTCCTTTGATTCGTCATATTTGGAAGAATAAAATTCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGCCTTAACACCAATGAGAAGCTACAAAAAAAAGTTCAGAACACATTGCTTAGCCCCTCGATGTGTTGTCTTTGCTATAAAGGTGAGGAAACTCTGGATCATCTATTTCTACATTGTCTCTTTACAAAAAAAACTTGGAACACTCTGTTTAGTATTTTTGACTTGGAGCTTTGTCTTCCTAGTAAGATTGATAGCTAA
BLAST of CSPI04G20740 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.1e-22
Identity = 78/304 (25.66%), Postives = 142/304 (46.71%), Query Frame = 1

Query: 72  SGAITPVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIAL 131
           S  + P  ++NRL Q+ R F+W   +     H+VKW    +P    GLG+ + +  N AL
Sbjct: 54  STILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRAL 113

Query: 132 LTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLWTGI-LKHKEIFNFS- 191
           ++K   R  +E+ S W   +   Y + E   S     +G     W  I +  +++ +   
Sbjct: 114 ISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGV 173

Query: 192 AFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAECWFIVTHSWNLGLRRNM 251
            ++ G+G +IRFW D+W   + L E   +        D  VA+  +I    W+       
Sbjct: 174 GWIPGDGQQIRFWTDRWVSGKPLLEL--DNGERPTDCDTVVAKDLWIPGRGWDFAKIDPY 233

Query: 252 LDN--EIANAASVLEILHSWAPTEGNDSLKWTPNINGNFTMKSTFLNLTKRS---PSIAV 311
             N   +   A VL+++     T   D L W  + +G F+++S +  LT      P++A 
Sbjct: 234 TTNNTRLELRAVVLDLV-----TGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMA- 293

Query: 312 PLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHL 369
                +WK ++P++VK FLW +  +++ T E+  ++    L + ++C +C  G E++ H+
Sbjct: 294 SFFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRR---HLSASNVCQVCKGGVESMLHV 346

BLAST of CSPI04G20740 vs. TrEMBL
Match: A5BKH7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.2e-63
Identity = 138/419 (32.94%), Postives = 210/419 (50.12%), Query Frame = 1

Query: 3   AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEE 62
           +GL +N  K+++  INL    L+R +    C     P  YLG  +GG       W+ + E
Sbjct: 180 SGLKVNLDKSNIYGINLEQNHLSRLAVMLDCKASGWPILYLGLPLGGNPKASGFWDPVIE 239

Query: 63  RFRYKFD-------INSGAIT-------------------PVGVINRLKQMIRKFVWTGG 122
           R   + D          G IT                   P  V  ++++M R+F+W+G 
Sbjct: 240 RISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQREFLWSGV 299

Query: 123 STNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYG 182
                 H+V WD    P    GLG G    +N+ALL KW  R+ +E ++ W   I++IYG
Sbjct: 300 GEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREGSALWHQVILSIYG 359

Query: 183 LEENGWSTKDPNRGKSYRLWTGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEK 242
              NGW   +  R      W  I L  +E   F+ FV+G+G +IRFW D W   +TL  +
Sbjct: 360 SHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFWDDLWWGDQTLGTQ 419

Query: 243 FPNLFSLSLKKDVYVAECW-FIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N 302
           +P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    
Sbjct: 420 YPRLLSVVTDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLMRSLDRLHISPSVP 479

Query: 303 DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNT 362
           D   W+ + +G FT+KS FL L++ S S  V   + +W +++P KVK F+W +A++ LNT
Sbjct: 480 DKRSWSISPSGLFTVKSFFLALSQYSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLNT 539

Query: 363 NEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI 393
           N+ LQ +  +  LSP++C LC K  ET+DHLFLHC  TK  W+ LF +  ++   P  I
Sbjct: 540 NDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSI 598

BLAST of CSPI04G20740 vs. TrEMBL
Match: A5BZ69_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000142 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.1e-62
Identity = 136/419 (32.46%), Postives = 208/419 (49.64%), Query Frame = 1

Query: 3   AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEE 62
           +GL +N  K+++  IN+    L+R +    C     P  YLG  +GG       W+ + E
Sbjct: 109 SGLKVNLDKSNIYGINIEQNHLSRLAVMLDCKASGWPILYLGLPLGGNPKASGFWDPVIE 168

Query: 63  RFRYKFD-------INSGAIT-------------------PVGVINRLKQMIRKFVWTGG 122
           R   + D          G IT                   P  V  ++++M R+F+W+G 
Sbjct: 169 RISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFRIPASVAAKIERMQREFLWSGV 228

Query: 123 STNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYG 182
                 H+V WD    P    GLG G    +N+ALL K   R+ +E ++ W   I++IYG
Sbjct: 229 GXGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKXLWRYPREGSALWHQVILSIYG 288

Query: 183 LEENGWSTKDPNRGKSYRLWTGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEK 242
              NGW   +  R      W  I L  +E   F+ FV+G+G +IRFW D W   + L  +
Sbjct: 289 XHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFWDDLWWGDQPLGTQ 348

Query: 243 FPNLFSLSLKKDVYVAECW-FIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N 302
           +P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    
Sbjct: 349 YPRLLSVVTDKNALISSILGYSRPFSWNFNFRRNLTDSEIEDLESLMRSLDRLHISPSVP 408

Query: 303 DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNT 362
           D   W+ + +G FT+KS FL L++ S S  V   + +W +++P KVK F+W +A++ LNT
Sbjct: 409 DKRSWSISPSGLFTVKSFFLALSQHSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLNT 468

Query: 363 NEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI 393
           N+ LQ +  +  LSP++C LC K  ET+DHLFLHC  TK  WN LF +  ++   P  I
Sbjct: 469 NDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWNRLFQLAKMDWVSPRSI 527

BLAST of CSPI04G20740 vs. TrEMBL
Match: A5BHW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016347 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 7.0e-62
Identity = 138/419 (32.94%), Postives = 207/419 (49.40%), Query Frame = 1

Query: 3   AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEE 62
           +GL +N  K+++  INL    L+R +E   C        YLG  +GG       W+ + E
Sbjct: 450 SGLKVNLDKSNIYGINLEQNHLSRLAEMFDCKASGWLILYLGLPLGGNPKASGFWDPVIE 509

Query: 63  RFRYKFD-------INSGAIT-------------------PVGVINRLKQMIRKFVWTGG 122
           R   + D          G IT                   P  V  ++++M R+F+W+G 
Sbjct: 510 RISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQREFLWSGV 569

Query: 123 STNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYG 182
                 H+V WD    P    GLG G    +N+ALL KW  R+ +E  + W   I++IYG
Sbjct: 570 GEGKRDHLVNWDVVCKPKSRRGLGFGKISMRNVALLGKWLWRYPREGLALWHQVILSIYG 629

Query: 183 LEENGWSTKDPNRGKSYRLWTGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEK 242
              NGW   +  R      W  I L  +E   F+ FV+G+G +IRFW D W   + L  +
Sbjct: 630 SHSNGWDANNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFWDDLWWGDQPLGTQ 689

Query: 243 FPNLFSLSLKKDVYVAECW-FIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N 302
           +P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    
Sbjct: 690 YPRLLSVVTDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLMRSLDRLHISPSVP 749

Query: 303 DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNT 362
           D   W+ + +G FT+KS FL L++ S S  V  I  +W +++P KVK F+W +A++ LNT
Sbjct: 750 DKRSWSISPSGLFTVKSFFLALSQYSESPPVFPIEFVWNSQVPFKVKSFVWLVAHKKLNT 809

Query: 363 NEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI 393
           N+ LQ +     LSP++C LC K  ET+DHLFLHC  TK  W+ LF +  ++   P  I
Sbjct: 810 NDLLQLRRPYKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSI 868

BLAST of CSPI04G20740 vs. TrEMBL
Match: A5C377_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.3e-60
Identity = 132/415 (31.81%), Postives = 204/415 (49.16%), Query Frame = 1

Query: 7    LNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRY 66
            +N  K+++  IN+    L+R +    C     P  YLG  +GG       W+ + ER   
Sbjct: 1366 VNLDKSNIYGINIEQNHLSRLAVMLDCKASGWPILYLGLPLGGNPKASGFWDPVIERISR 1425

Query: 67   KFD-------INSGAIT-------------------PVGVINRLKQMIRKFVWTGGSTNP 126
            + D          G IT                   P  V  ++++M R+F+W+G     
Sbjct: 1426 RLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFRIPASVAAKIERMQREFLWSGVGEGK 1485

Query: 127  IAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEEN 186
              H+V WD    P    GLG G    +N+ALL KW  R+ +E ++ W   I++IYG   N
Sbjct: 1486 RDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREGSALWHQVILSIYGSHSN 1545

Query: 187  GWSTKDPNRGKSYRLWTGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNL 246
            GW   +  R      W  I L  +E   F+ FV+G+G +IRFW D W   + L  ++P L
Sbjct: 1546 GWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFWDDLWWGDQPLGTQYPRL 1605

Query: 247  FSLSLKKDVYVAECW-FIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-NDSLK 306
             S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    D   
Sbjct: 1606 LSVVTDKNALISSIXGYSRPFSWNFNFRRNLTDSEIEDLESLMRSLDRLHISPSVXDKRS 1665

Query: 307  WTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKL 366
            W+ + +G FT+KS FL L++      V   + +W +++P KVK F+W +A++ LNTN+ L
Sbjct: 1666 WSISPSGLFTVKSFFLALSQXXEXPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLNTNDLL 1725

Query: 367  QKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI 393
            Q +  +  LSP++C LC K  ET+DHLFLHC  TK  W+ LF +  ++   P  I
Sbjct: 1726 QLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSI 1780

BLAST of CSPI04G20740 vs. TrEMBL
Match: A5BPI6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.8e-60
Identity = 130/419 (31.03%), Postives = 207/419 (49.40%), Query Frame = 1

Query: 3    AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEE 62
            +GL +N  K+++  INL    L R +E   C     P  YLG  +GG       W+ + E
Sbjct: 826  SGLKVNLDKSNIYGINLGQDHLHRLAELLDCKASGWPILYLGLPLGGNPKSGSFWDPVIE 885

Query: 63   RFRYKFD-------INSGAIT-------------------PVGVINRLKQMIRKFVWTGG 122
            R   + D          G IT                   P  V  R++++ R F+W+G 
Sbjct: 886  RISSRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAGRIERLQRDFLWSGV 945

Query: 123  STNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYG 182
                  H+V W+         GLG+G    +N ALL KW  R+ +E ++ W   I++IYG
Sbjct: 946  GEGKRDHLVSWBVVCKSKMKGGLGLGRISLRNSALLGKWLWRYPREGSALWHQVILSIYG 1005

Query: 183  LEENGWSTKDPNRGKSYRLWTGILKHKEIFN-FSAFVLGEGTKIRFWKDKWCVAETLTEK 242
               NGW      R      W  I +  + F+ F+ F++G+G +IRFW+D W   ++L  +
Sbjct: 1006 SHSNGWDANTXVRWSHRCPWKAIAQVFQDFSKFTRFIVGDGDRIRFWEDLWWGDQSLGVR 1065

Query: 243  FPNLFSLSLKKDVYVAECWFIVT-HSWNLGLRRNMLDNEIANAASVLEIL-HSWAPTEGN 302
            FP L  + + K++ ++         SWN   RRN+ D+EI    S+++ L H        
Sbjct: 1066 FPRLLRVVMDKNILISSILGSTRPFSWNFNFRRNLSDSEIEKVESLMQSLDHIHLSPSVP 1125

Query: 303  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNT 362
            D   W+ + +G FT+KS FL L++ S   +V   + +W +++P K+KFF+W +A++ +NT
Sbjct: 1126 DKRSWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLVWNSQVPFKIKFFVWLVAHKKVNT 1185

Query: 363  NEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI 393
            N+ LQ +     LSP +C LC +  ET+DHLFLHC  T   W+ LF +  ++   P  +
Sbjct: 1186 NDMLQLRRPYKALSPDICMLCMERGETVDHLFLHCSMTMGLWHRLFQLTKIDWVPPRSV 1244

BLAST of CSPI04G20740 vs. TAIR10
Match: AT5G18880.1 (AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-07
Identity = 52/206 (25.24%), Postives = 77/206 (37.38%), Query Frame = 1

Query: 185 IFNFSAFVLGEGTKIRFWKDKWC----VAETLTEKFPNLFSLSLKKDVYVAECWFIVTHS 244
           I  F    +G G    FW D W     +   L    P    L +++D  V E        
Sbjct: 8   IVEFMRCDMGNGESASFWYDAWTDFGQLLTFLGAAGPR--QLRIRQDARVVEA--SRNGD 67

Query: 245 WNLGLRRNMLDNEIANAASVLEILHSWAPTEGNDSLKWTPNINGN----FTMKSTFLNLT 304
           W L   R+        A ++  + H    + G DS  W  N  G+    F+ + T+  + 
Sbjct: 68  WFLPAARSDNSQLFLAALTMAPVPHE---SRGQDSFLWR-NAAGSYLPSFSSRDTWEQIR 127

Query: 305 KRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYK 364
             SP+  VP  + +W  +   +     W      L T ++L+    N    PS   LC  
Sbjct: 128 VHSPT--VPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNI---PSSWVLCSN 187

Query: 365 GEETLDHLFLHCLFTKKTWNTLFSIF 383
           G+ET  HLF  C F+   W    S F
Sbjct: 188 GDETHAHLFFECSFSLAIWEFFASKF 200

BLAST of CSPI04G20740 vs. NCBI nr
Match: gi|147792407|emb|CAN63585.1| (hypothetical protein VITISV_026806 [Vitis vinifera])

HSP 1 Score: 251.1 bits (640), Expect = 3.1e-63
Identity = 138/419 (32.94%), Postives = 210/419 (50.12%), Query Frame = 1

Query: 3   AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEE 62
           +GL +N  K+++  INL    L+R +    C     P  YLG  +GG       W+ + E
Sbjct: 180 SGLKVNLDKSNIYGINLEQNHLSRLAVMLDCKASGWPILYLGLPLGGNPKASGFWDPVIE 239

Query: 63  RFRYKFD-------INSGAIT-------------------PVGVINRLKQMIRKFVWTGG 122
           R   + D          G IT                   P  V  ++++M R+F+W+G 
Sbjct: 240 RISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQREFLWSGV 299

Query: 123 STNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYG 182
                 H+V WD    P    GLG G    +N+ALL KW  R+ +E ++ W   I++IYG
Sbjct: 300 GEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREGSALWHQVILSIYG 359

Query: 183 LEENGWSTKDPNRGKSYRLWTGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEK 242
              NGW   +  R      W  I L  +E   F+ FV+G+G +IRFW D W   +TL  +
Sbjct: 360 SHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFWDDLWWGDQTLGTQ 419

Query: 243 FPNLFSLSLKKDVYVAECW-FIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N 302
           +P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    
Sbjct: 420 YPRLLSVVTDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLMRSLDRLHISPSVP 479

Query: 303 DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNT 362
           D   W+ + +G FT+KS FL L++ S S  V   + +W +++P KVK F+W +A++ LNT
Sbjct: 480 DKRSWSISPSGLFTVKSFFLALSQYSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLNT 539

Query: 363 NEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI 393
           N+ LQ +  +  LSP++C LC K  ET+DHLFLHC  TK  W+ LF +  ++   P  I
Sbjct: 540 NDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSI 598

BLAST of CSPI04G20740 vs. NCBI nr
Match: gi|147803024|emb|CAN66166.1| (hypothetical protein VITISV_000142 [Vitis vinifera])

HSP 1 Score: 247.3 bits (630), Expect = 4.5e-62
Identity = 136/419 (32.46%), Postives = 208/419 (49.64%), Query Frame = 1

Query: 3   AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEE 62
           +GL +N  K+++  IN+    L+R +    C     P  YLG  +GG       W+ + E
Sbjct: 109 SGLKVNLDKSNIYGINIEQNHLSRLAVMLDCKASGWPILYLGLPLGGNPKASGFWDPVIE 168

Query: 63  RFRYKFD-------INSGAIT-------------------PVGVINRLKQMIRKFVWTGG 122
           R   + D          G IT                   P  V  ++++M R+F+W+G 
Sbjct: 169 RISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFRIPASVAAKIERMQREFLWSGV 228

Query: 123 STNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYG 182
                 H+V WD    P    GLG G    +N+ALL K   R+ +E ++ W   I++IYG
Sbjct: 229 GXGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKXLWRYPREGSALWHQVILSIYG 288

Query: 183 LEENGWSTKDPNRGKSYRLWTGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEK 242
              NGW   +  R      W  I L  +E   F+ FV+G+G +IRFW D W   + L  +
Sbjct: 289 XHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFWDDLWWGDQPLGTQ 348

Query: 243 FPNLFSLSLKKDVYVAECW-FIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N 302
           +P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    
Sbjct: 349 YPRLLSVVTDKNALISSILGYSRPFSWNFNFRRNLTDSEIEDLESLMRSLDRLHISPSVP 408

Query: 303 DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNT 362
           D   W+ + +G FT+KS FL L++ S S  V   + +W +++P KVK F+W +A++ LNT
Sbjct: 409 DKRSWSISPSGLFTVKSFFLALSQHSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLNT 468

Query: 363 NEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI 393
           N+ LQ +  +  LSP++C LC K  ET+DHLFLHC  TK  WN LF +  ++   P  I
Sbjct: 469 NDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWNRLFQLAKMDWVSPRSI 527

BLAST of CSPI04G20740 vs. NCBI nr
Match: gi|147835140|emb|CAN76904.1| (hypothetical protein VITISV_016347 [Vitis vinifera])

HSP 1 Score: 246.1 bits (627), Expect = 1.0e-61
Identity = 138/419 (32.94%), Postives = 207/419 (49.40%), Query Frame = 1

Query: 3   AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEE 62
           +GL +N  K+++  INL    L+R +E   C        YLG  +GG       W+ + E
Sbjct: 450 SGLKVNLDKSNIYGINLEQNHLSRLAEMFDCKASGWLILYLGLPLGGNPKASGFWDPVIE 509

Query: 63  RFRYKFD-------INSGAIT-------------------PVGVINRLKQMIRKFVWTGG 122
           R   + D          G IT                   P  V  ++++M R+F+W+G 
Sbjct: 510 RISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQREFLWSGV 569

Query: 123 STNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYG 182
                 H+V WD    P    GLG G    +N+ALL KW  R+ +E  + W   I++IYG
Sbjct: 570 GEGKRDHLVNWDVVCKPKSRRGLGFGKISMRNVALLGKWLWRYPREGLALWHQVILSIYG 629

Query: 183 LEENGWSTKDPNRGKSYRLWTGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEK 242
              NGW   +  R      W  I L  +E   F+ FV+G+G +IRFW D W   + L  +
Sbjct: 630 SHSNGWDANNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFWDDLWWGDQPLGTQ 689

Query: 243 FPNLFSLSLKKDVYVAECW-FIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N 302
           +P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    
Sbjct: 690 YPRLLSVVTDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLMRSLDRLHISPSVP 749

Query: 303 DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNT 362
           D   W+ + +G FT+KS FL L++ S S  V  I  +W +++P KVK F+W +A++ LNT
Sbjct: 750 DKRSWSISPSGLFTVKSFFLALSQYSESPPVFPIEFVWNSQVPFKVKSFVWLVAHKKLNT 809

Query: 363 NEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI 393
           N+ LQ +     LSP++C LC K  ET+DHLFLHC  TK  W+ LF +  ++   P  I
Sbjct: 810 NDLLQLRRPYKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSI 868

BLAST of CSPI04G20740 vs. NCBI nr
Match: gi|147802674|emb|CAN62051.1| (hypothetical protein VITISV_016641 [Vitis vinifera])

HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60
Identity = 132/415 (31.81%), Postives = 204/415 (49.16%), Query Frame = 1

Query: 7    LNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRY 66
            +N  K+++  IN+    L+R +    C     P  YLG  +GG       W+ + ER   
Sbjct: 1366 VNLDKSNIYGINIEQNHLSRLAVMLDCKASGWPILYLGLPLGGNPKASGFWDPVIERISR 1425

Query: 67   KFD-------INSGAIT-------------------PVGVINRLKQMIRKFVWTGGSTNP 126
            + D          G IT                   P  V  ++++M R+F+W+G     
Sbjct: 1426 RLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFRIPASVAAKIERMQREFLWSGVGEGK 1485

Query: 127  IAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEEN 186
              H+V WD    P    GLG G    +N+ALL KW  R+ +E ++ W   I++IYG   N
Sbjct: 1486 RDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREGSALWHQVILSIYGSHSN 1545

Query: 187  GWSTKDPNRGKSYRLWTGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNL 246
            GW   +  R      W  I L  +E   F+ FV+G+G +IRFW D W   + L  ++P L
Sbjct: 1546 GWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFWDDLWWGDQPLGTQYPRL 1605

Query: 247  FSLSLKKDVYVAECW-FIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-NDSLK 306
             S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    D   
Sbjct: 1606 LSVVTDKNALISSIJGYSRPFSWNFNFRRNLTDSEIEDLESLMRSLDRLHISPSVXDKRS 1665

Query: 307  WTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKL 366
            W+ + +G FT+KS FL L++      V   + +W +++P KVK F+W +A++ LNTN+ L
Sbjct: 1666 WSISPSGLFTVKSFFLALSQXXEXPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLNTNDLL 1725

Query: 367  QKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI 393
            Q +  +  LSP++C LC K  ET+DHLFLHC  TK  W+ LF +  ++   P  I
Sbjct: 1726 QLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSI 1780

BLAST of CSPI04G20740 vs. NCBI nr
Match: gi|147798966|emb|CAN68165.1| (hypothetical protein VITISV_008538 [Vitis vinifera])

HSP 1 Score: 240.4 bits (612), Expect = 5.5e-60
Identity = 130/419 (31.03%), Postives = 207/419 (49.40%), Query Frame = 1

Query: 3    AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEE 62
            +GL +N  K+++  INL    L R +E   C     P  YLG  +GG       W+ + E
Sbjct: 826  SGLKVNLDKSNIYGINLGQDHLHRLAELLDCKASGWPILYLGLPLGGNPKSGSFWDPVIE 885

Query: 63   RFRYKFD-------INSGAIT-------------------PVGVINRLKQMIRKFVWTGG 122
            R   + D          G IT                   P  V  R++++ R F+W+G 
Sbjct: 886  RISSRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAGRIERLQRDFLWSGV 945

Query: 123  STNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYG 182
                  H+V W+         GLG+G    +N ALL KW  R+ +E ++ W   I++IYG
Sbjct: 946  GEGKRDHLVSWBVVCKSKMKGGLGLGRISLRNSALLGKWLWRYPREGSALWHQVILSIYG 1005

Query: 183  LEENGWSTKDPNRGKSYRLWTGILKHKEIFN-FSAFVLGEGTKIRFWKDKWCVAETLTEK 242
               NGW      R      W  I +  + F+ F+ F++G+G +IRFW+D W   ++L  +
Sbjct: 1006 SHSNGWDANTXVRWSHRCPWKAIAQVFQDFSKFTRFIVGDGDRIRFWEDLWWGDQSLGVR 1065

Query: 243  FPNLFSLSLKKDVYVAECWFIVT-HSWNLGLRRNMLDNEIANAASVLEIL-HSWAPTEGN 302
            FP L  + + K++ ++         SWN   RRN+ D+EI    S+++ L H        
Sbjct: 1066 FPRLLRVVMDKNILISSILGSTRPFSWNFNFRRNLSDSEIEKVESLMQSLDHIHLSPSVP 1125

Query: 303  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNT 362
            D   W+ + +G FT+KS FL L++ S   +V   + +W +++P K+KFF+W +A++ +NT
Sbjct: 1126 DKRSWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLVWNSQVPFKIKFFVWLVAHKKVNT 1185

Query: 363  NEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI 393
            N+ LQ +     LSP +C LC +  ET+DHLFLHC  T   W+ LF +  ++   P  +
Sbjct: 1186 NDMLQLRRPYKALSPDICMLCMERGETVDHLFLHCSMTMGLWHRLFQLTKIDWVPPRSV 1244

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RNHX1_ARATH2.1e-2225.66Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P... [more]
Match NameE-valueIdentityDescription
A5BKH7_VITVI2.2e-6332.94Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026806 PE=4 SV=1[more]
A5BZ69_VITVI3.1e-6232.46Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000142 PE=4 SV=1[more]
A5BHW7_VITVI7.0e-6232.94Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016347 PE=4 SV=1[more]
A5C377_VITVI1.3e-6031.81Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1[more]
A5BPI6_VITVI3.8e-6031.03Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G18880.13.4e-0725.24 RNA-directed DNA polymerase (reverse transcriptase)-related family p... [more]
Match NameE-valueIdentityDescription
gi|147792407|emb|CAN63585.1|3.1e-6332.94hypothetical protein VITISV_026806 [Vitis vinifera][more]
gi|147803024|emb|CAN66166.1|4.5e-6232.46hypothetical protein VITISV_000142 [Vitis vinifera][more]
gi|147835140|emb|CAN76904.1|1.0e-6132.94hypothetical protein VITISV_016347 [Vitis vinifera][more]
gi|147802674|emb|CAN62051.1|2.5e-6031.81hypothetical protein VITISV_016641 [Vitis vinifera][more]
gi|147798966|emb|CAN68165.1|5.5e-6031.03hypothetical protein VITISV_008538 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G20740.1CSPI04G20740.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 286..375
score: 1.7
NoneNo IPR availablePANTHERPTHR31696FAMILY NOT NAMEDcoord: 176..340
score: 2.7
NoneNo IPR availablePANTHERPTHR31696:SF25SUBFAMILY NOT NAMEDcoord: 176..340
score: 2.7

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None